Lad1 (ladinin 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Lad1 (ladinin 1) Rattus norvegicus
Analyze
Symbol: Lad1
Name: ladinin 1
RGD ID: 1310652
Description: Predicted to enable structural molecule activity. Predicted to be located in actin cytoskeleton. Orthologous to human LAD1 (ladinin 1); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ladinin; ladinin-1; LOC313325
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,801,347 - 49,815,709 (+)NCBIGRCr8
mRatBN7.21347,249,605 - 47,263,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,249,605 - 47,263,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,857,617 - 49,871,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,145,682 - 51,160,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,409,583 - 48,423,948 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,645,257 - 52,659,619 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,645,257 - 52,659,619 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,693,625 - 57,707,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,850,260 - 48,864,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,868,513 - 48,878,662 (+)NCBI
Celera1347,566,704 - 47,581,066 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
dimethylarsinic acid  (ISO)
ethylparaben  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methylarsonic acid  (ISO)
methylphenidate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
sulindac  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
trametinib  (ISO)
triptonide  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18570454   PMID:25468996  


Genomics

Comparative Map Data
Lad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,801,347 - 49,815,709 (+)NCBIGRCr8
mRatBN7.21347,249,605 - 47,263,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,249,605 - 47,263,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,857,617 - 49,871,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,145,682 - 51,160,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,409,583 - 48,423,948 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,645,257 - 52,659,619 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,645,257 - 52,659,619 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,693,625 - 57,707,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,850,260 - 48,864,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,868,513 - 48,878,662 (+)NCBI
Celera1347,566,704 - 47,581,066 (+)NCBICelera
Cytogenetic Map13q13NCBI
LAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,380,833 - 201,399,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,380,833 - 201,399,915 (-)EnsemblGRCh38hg38GRCh38
GRCh371201,349,961 - 201,368,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,616,589 - 199,635,292 (-)NCBINCBI36Build 36hg18NCBI36
Build 341198,081,623 - 198,100,326NCBI
Celera1174,473,817 - 174,492,312 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,516,212 - 172,534,694 (-)NCBIHuRef
CHM1_11202,772,133 - 202,790,834 (-)NCBICHM1_1
T2T-CHM13v2.01200,638,642 - 200,657,124 (-)NCBIT2T-CHM13v2.0
Lad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,746,336 - 135,761,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,746,336 - 135,761,080 (+)EnsemblGRCm39 Ensembl
GRCm381135,818,598 - 135,833,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,818,598 - 135,833,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,715,175 - 137,729,918 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,635,009 - 137,649,752 (+)NCBIMGSCv36mm8
Celera1138,453,423 - 138,468,147 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.3NCBI
Lad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,510,298 - 37,526,225 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,510,675 - 37,526,178 (-)NCBIChiLan1.0ChiLan1.0
LAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,981,935 - 48,000,468 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,946,623 - 47,965,159 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01176,979,109 - 176,997,837 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,280,503 - 181,298,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,281,294 - 181,298,732 (-)Ensemblpanpan1.1panPan2
LAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,623,839 - 1,639,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,624,056 - 1,641,104 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,541,200 - 1,556,676 (+)NCBIDog10K_Boxer_Tasha
Lad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,799,094 - 73,814,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,033,672 - 3,048,943 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,033,750 - 3,048,921 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,766,872 - 23,778,654 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,767,204 - 23,779,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,176,646 - 28,189,027 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12528,013,713 - 28,032,481 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2528,013,826 - 28,031,076 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,810,799 - 28,829,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248079,316,457 - 9,328,485 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248079,315,172 - 9,329,545 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lad1
66 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:62
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000012801
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134522835847841255Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat

Markers in Region
AW533418  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2598,268,767 - 98,268,927 (+)MAPPERmRatBN7.2
Rnor_6.05101,996,973 - 101,997,132NCBIRnor6.0
Rnor_5.05106,005,996 - 106,006,155UniSTSRnor5.0
RGSC_v3.45102,696,541 - 102,696,700UniSTSRGSC3.4
Celera596,800,525 - 96,800,684UniSTS
RH 3.4 Map5742.9UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map13q13UniSTS
RH141692  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2598,270,687 - 98,270,877 (+)MAPPERmRatBN7.2
mRatBN7.21347,263,719 - 47,263,918 (+)MAPPERmRatBN7.2
Rnor_6.01352,659,372 - 52,659,570NCBIRnor6.0
Rnor_6.05101,998,889 - 101,999,078NCBIRnor6.0
Rnor_5.01357,707,740 - 57,707,938UniSTSRnor5.0
Rnor_5.05106,007,912 - 106,008,101UniSTSRnor5.0
RGSC_v3.41348,864,375 - 48,864,573UniSTSRGSC3.4
RGSC_v3.45102,698,459 - 102,698,648UniSTSRGSC3.4
Celera596,802,419 - 96,802,608UniSTS
Celera1347,580,819 - 47,581,017UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 112 88 88 57 25 57 6 214 95 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000012801   ⟹   ENSRNOP00000012801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,249,605 - 47,263,967 (+)Ensembl
Rnor_6.0 Ensembl1352,645,257 - 52,659,619 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100192   ⟹   ENSRNOP00000091877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,250,373 - 47,263,967 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100818   ⟹   ENSRNOP00000090416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,256,295 - 47,263,091 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111852   ⟹   ENSRNOP00000080470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1347,256,326 - 47,263,967 (+)Ensembl
RefSeq Acc Id: NM_001107942   ⟹   NP_001101412
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,801,347 - 49,815,709 (+)NCBI
mRatBN7.21347,249,605 - 47,263,967 (+)NCBI
Rnor_6.01352,645,257 - 52,659,619 (+)NCBI
Rnor_5.01357,693,625 - 57,707,987 (+)NCBI
RGSC_v3.41348,850,260 - 48,864,622 (+)RGD
Celera1347,566,704 - 47,581,066 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101412 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI67044 (Get FASTA)   NCBI Sequence Viewer  
  EDM09680 (Get FASTA)   NCBI Sequence Viewer  
  EDM09681 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012801.5
  ENSRNOP00000080470.1
  ENSRNOP00000090416.1
  ENSRNOP00000091877.1
RefSeq Acc Id: NP_001101412   ⟸   NM_001107942
- UniProtKB: G3V779 (UniProtKB/TrEMBL),   A6ICG6 (UniProtKB/TrEMBL),   A0A8I5ZPS3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012801   ⟸   ENSRNOT00000012801
Ensembl Acc Id: ENSRNOP00000080470   ⟸   ENSRNOT00000111852
Ensembl Acc Id: ENSRNOP00000091877   ⟸   ENSRNOT00000100192
Ensembl Acc Id: ENSRNOP00000090416   ⟸   ENSRNOT00000100818

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V779-F1-model_v2 AlphaFold G3V779 1-519 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698848
Promoter ID:EPDNEW_R9373
Type:initiation region
Name:Lad1_1
Description:ladinin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01352,645,247 - 52,645,307EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310652 AgrOrtholog
BioCyc Gene G2FUF-18190 BioCyc
Ensembl Genes ENSRNOG00000009144 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012801.6 UniProtKB/TrEMBL
  ENSRNOT00000100192.1 UniProtKB/TrEMBL
  ENSRNOT00000100818.1 UniProtKB/TrEMBL
  ENSRNOT00000111852.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7368103 IMAGE-MGC_LOAD
InterPro Ladinin_1 UniProtKB/TrEMBL
KEGG Report rno:313325 UniProtKB/TrEMBL
MGC_CLONE MGC:189311 IMAGE-MGC_LOAD
NCBI Gene 313325 ENTREZGENE
PANTHER LADININ-1 UniProtKB/TrEMBL
  PTHR12392 UniProtKB/TrEMBL
PhenoGen Lad1 PhenoGen
PIRSF Ladinin_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009144 RatGTEx
UniProt A0A8I5ZPS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFD2_RAT UniProtKB/TrEMBL
  A0A8I6GI64_RAT UniProtKB/TrEMBL
  A6ICG6 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ67_RAT UniProtKB/TrEMBL
  G3V779 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Lad1  ladinin 1  Lad1  ladinin   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Lad1  ladinin   Lad1_predicted  ladinin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Lad1_predicted  ladinin (predicted)      Symbol and Name status set to approved 70820 APPROVED