Lad1 (ladinin 1) - Rat Genome Database

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Gene: Lad1 (ladinin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Lad1
Name: ladinin 1
RGD ID: 12444315
Description: ENCODES a protein that exhibits structural molecule activity (inferred); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ladinin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,799,094 - 73,814,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,033,672 - 3,048,943 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,033,750 - 3,048,921 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,799,094 - 73,814,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,033,672 - 3,048,943 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,033,750 - 3,048,921 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,380,833 - 201,399,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,380,833 - 201,399,915 (-)EnsemblGRCh38hg38GRCh38
GRCh371201,349,961 - 201,368,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,616,589 - 199,635,292 (-)NCBINCBI36Build 36hg18NCBI36
Build 341198,081,623 - 198,100,326NCBI
Celera1174,473,817 - 174,492,312 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,516,212 - 172,534,694 (-)NCBIHuRef
CHM1_11202,772,133 - 202,790,834 (-)NCBICHM1_1
T2T-CHM13v2.01200,638,642 - 200,657,124 (-)NCBIT2T-CHM13v2.0
Lad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,746,336 - 135,761,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,746,336 - 135,761,080 (+)EnsemblGRCm39 Ensembl
GRCm381135,818,598 - 135,833,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,818,598 - 135,833,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,715,175 - 137,729,918 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,635,009 - 137,649,752 (+)NCBIMGSCv36mm8
Celera1138,453,423 - 138,468,147 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.3NCBI
Lad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,801,347 - 49,815,709 (+)NCBIGRCr8
mRatBN7.21347,249,605 - 47,263,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,249,605 - 47,263,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,857,617 - 49,871,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,145,682 - 51,160,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,409,583 - 48,423,948 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,645,257 - 52,659,619 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,645,257 - 52,659,619 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,693,625 - 57,707,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,850,260 - 48,864,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,868,513 - 48,878,662 (+)NCBI
Celera1347,566,704 - 47,581,066 (+)NCBICelera
Cytogenetic Map13q13NCBI
Lad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,510,298 - 37,526,225 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,510,675 - 37,526,178 (-)NCBIChiLan1.0ChiLan1.0
LAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,981,935 - 48,000,468 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,946,623 - 47,965,159 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01176,979,109 - 176,997,837 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,280,503 - 181,298,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,281,294 - 181,298,732 (-)Ensemblpanpan1.1panPan2
LAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,623,839 - 1,639,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,624,056 - 1,641,104 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,541,200 - 1,556,676 (+)NCBIDog10K_Boxer_Tasha
LAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,766,872 - 23,778,654 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,767,204 - 23,779,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,176,646 - 28,189,027 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12528,013,713 - 28,032,481 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2528,013,826 - 28,031,076 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,810,799 - 28,829,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248079,316,457 - 9,328,485 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248079,315,172 - 9,329,545 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021729873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000026232   ⟹   ENSSTOP00000017629
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365673,033,672 - 3,048,943 (+)Ensembl
RefSeq Acc Id: XM_021729873   ⟹   XP_021585548
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934473,799,094 - 73,814,231 (+)NCBI
SpeTri2.0NW_0049365673,033,750 - 3,048,921 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021585548 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017629.1
GenBank Protein KAG3258418 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021585548   ⟸   XM_021729873
- UniProtKB: I3MZT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017629   ⟸   ENSSTOT00000026232


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019836 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026232.2 UniProtKB/TrEMBL
InterPro Ladinin_1 UniProtKB/TrEMBL
NCBI Gene Lad1 ENTREZGENE
PANTHER LADININ-1 UniProtKB/TrEMBL
  PTHR12392 UniProtKB/TrEMBL
UniProt I3MZT3 ENTREZGENE, UniProtKB/TrEMBL