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Gene: Nlrp12 (NLR family, pyrin domain containing 12) Rattus norvegicus

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Symbol:

Nlrp12

Name:

NLR family, pyrin domain containing 12

RGD ID:

1309415

Description:

Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including negative regulation of protein autophosphorylation; regulation of gene expression; and regulation of signal transduction. Predicted to act upstream of or within several processes, including dendritic cell migration; positive regulation of MHC class I biosynthetic process; and regulation of intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be part of canonical inflammasome complex. Human ortholog(s) of this gene implicated in familial cold autoinflammatory syndrome 2. Orthologous to human NLRP12 (NLR family pyrin domain containing 12); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292541; NACHT, leucine rich repeat and PYD containing 12; NACHT, LRR and PYD domains-containing protein 12; Nalp12

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NLRP12 (NLR family pyrin domain containing 12)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Nlrp12 (NLR family, pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nlrp12 (NLR family pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NLRP12 (NLR family pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NLRP12 (NLR family pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nlrp12 (NLR family pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NLRP12 (NLR family pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NLRP12 (NLR family pyrin domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NLRP12 (NLR family pyrin domain containing 12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nlrp12 (NLR family, pyrin domain containing 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-76m11.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-26m3.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-178j11.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-124l13.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	zgc:174180	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-236c18.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-255g12.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-227e10.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-24k9.2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-226o13.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	LOC108183498 (NLR family CARD domain-containing protein 3-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-236c18.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-165e24.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-15j1.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-100h4.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:cabz01069012.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-71l4.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-238e22.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-13n15.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	LOC108183673 (NLR family CARD domain-containing protein 3-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-181d7.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|SonicParanoid)
Danio rerio (zebrafish):	LOC558818 (protein NLRC3-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-114l13.13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-114l13.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-77c4.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-236c18.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-71l4.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-4f2.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-23k10.2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-133h13.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	zgc:174944	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	nlrc8 (NLR family CARD domain containing 8)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:rp71-7l19.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-233m11.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	si:dkey-27n6.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-250k18.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-232d10.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	zgc:173709	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-205a14.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	zgc:194906	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-151g22.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-271g18.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-197e7.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-233e3.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid)
Danio rerio (zebrafish):	nlrc7 (NLR family CARD domain containing 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-214b16.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	LOC101884563 (protein NLRC3-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-236p5.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:zfos-364h11.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-22k7.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	nlrp16 (NACHT, LRR and PYD domains-containing protein 16)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-237a4.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	zgc:110171	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-4c4.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-194e1.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-191a16.2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-7i4.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-29j8.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-165o8.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-15j1.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-50f9.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-181d7.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-233m11.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-35e5.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-123a12.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-236p5.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-227p7.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-121n8.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-15j1.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-114l13.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-11n14.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-82i20.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-264f17.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-196h24.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-59l11.10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-207e19.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-203c5.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	zmp:0000001020	Alliance	DIOPT (Ensembl Compara\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-201o1.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-196h16.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-168d20.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-171l17.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-222h21.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-191a16.5	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-213a13.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-149a19.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-238e22.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-194e1.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|SonicParanoid)
Danio rerio (zebrafish):	nlrc6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-15j1.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	nlrc9	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder)
Danio rerio (zebrafish):	nlrp3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|SonicParanoid)
Danio rerio (zebrafish):	nlrp12l	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Nlrp12^em1Mcwi

Genetic Models:

SS-Nlrp12^em1Mcwi

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	74,848,020 - 74,885,945 (+)	NCBI		GRCr8
mRatBN7.2	1	65,932,610 - 65,969,873 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	65,932,595 - 65,960,934 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	71,380,449 - 71,408,567 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	79,803,424 - 79,831,544 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	73,136,593 - 73,164,746 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	64,506,750 - 64,543,908 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	64,506,735 - 64,534,912 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	63,493,575 - 63,521,356 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	64,242,875 - 64,271,212 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	64,320,985 - 64,349,047 (+)	NCBI
Celera	1	63,663,350 - 63,691,368 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune interstitial lung, joint, and kidney disease (ISO)

Chediak-Higashi syndrome (ISO)

Childhood Schizophrenia (ISO)

Cryopyrin-Associated Periodic Syndromes (ISO)

familial cold autoinflammatory syndrome (ISO)

familial cold autoinflammatory syndrome 2 (ISO)

familial Mediterranean fever (ISO)

genetic disease (ISO)

multisystem inflammatory syndrome in children (ISO)

renal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,4-phenylenediamine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

acetamide (EXP)

aflatoxin B1 (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (ISO)

carnosic acid (ISO)

choline (ISO)

curcumin (ISO)

cyanocob(III)alamin (ISO)

diarsenic trioxide (ISO)

dioxygen (EXP,ISO)

folic acid (ISO)

genistein (ISO)

glycine betaine (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP,ISO)

nickel atom (ISO)

nickel dichloride (ISO)

ozone (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

Ptaquiloside (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

testosterone (EXP)

tetrachloroethene (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichloroethene (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

XL147 (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to cytokine stimulus (ISO)

dendritic cell migration (ISO)

ERK1 and ERK2 cascade (ISO)

inflammatory response (IEA)

innate immune response (IEA)

negative regulation of canonical NF-kappaB signal transduction (IBA,ISO)

negative regulation of cytokine production (ISO)

negative regulation of ERK1 and ERK2 cascade (ISO)

negative regulation of inflammatory response (ISO)

negative regulation of interleukin-1 production (ISO)

negative regulation of interleukin-6 production (ISO)

negative regulation of NF-kappaB transcription factor activity (ISO)

negative regulation of non-canonical NF-kappaB signal transduction (IBA,ISO)

negative regulation of protein autophosphorylation (ISO)

negative regulation of signal transduction (ISO)

negative regulation of Toll signaling pathway (ISO)

positive regulation of MHC class I biosynthetic process (IBA,ISO)

positive regulation of non-canonical NF-kappaB signal transduction (ISO)

regulation of canonical NF-kappaB signal transduction (ISO)

regulation of cysteine-type endopeptidase activity (ISO)

regulation of inflammatory response (IBA)

Cellular Component

canonical inflammasome complex (IEA)

cytoplasm (IBA,ISO)

nucleus (ISO)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

protein-macromolecule adaptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12019269	PMID:12759408	PMID:16203735	PMID:17237370	PMID:18230725	PMID:20861349	PMID:22503542	PMID:30212649

Genomics

Comparative Map Data

Nlrp12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	74,848,020 - 74,885,945 (+)	NCBI		GRCr8
mRatBN7.2	1	65,932,610 - 65,969,873 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	65,932,595 - 65,960,934 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	71,380,449 - 71,408,567 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	79,803,424 - 79,831,544 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	73,136,593 - 73,164,746 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	64,506,750 - 64,543,908 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	64,506,735 - 64,534,912 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	63,493,575 - 63,521,356 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	64,242,875 - 64,271,212 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	64,320,985 - 64,349,047 (+)	NCBI
Celera	1	63,663,350 - 63,691,368 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

NLRP12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	53,793,584 - 53,824,403 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	53,792,139 - 53,824,403 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	54,296,838 - 54,327,657 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	58,988,650 - 59,019,404 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	58,988,668 - 59,019,405	NCBI
Celera	19	51,337,923 - 51,368,731 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	50,616,403 - 50,647,262 (-)	NCBI		HuRef
CHM1_1	19	54,298,613 - 54,329,404 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	56,873,043 - 56,904,207 (-)	NCBI		T2T-CHM13v2.0

Nlrp12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	3,267,317 - 3,298,400 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	3,267,458 - 3,298,370 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	3,218,643 - 3,249,771 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	3,218,784 - 3,249,740 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	3,221,511 - 3,249,741 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	3,221,511 - 3,249,741 (-)	NCBI		MGSCv36	mm8
Celera	7	3,172,140 - 3,200,874 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	1.88	NCBI

Nlrp12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955604	317,987 - 331,051 (+)	NCBI	ChiLan1.0	ChiLan1.0

NLRP12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	59,797,427 - 59,836,448 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	61,719,665 - 61,758,320 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	50,735,124 - 50,765,556 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	59,581,547 - 59,614,665 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	59,582,005 - 59,614,436 (-)	Ensembl	panpan1.1		panPan2

NLRP12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	103,571,756 - 103,605,692 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	103,437,738 - 103,470,619 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	104,026,723 - 104,061,018 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	104,026,630 - 104,058,744 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	103,658,372 - 103,692,595 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	103,420,767 - 103,454,359 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	104,139,804 - 104,174,064 (+)	NCBI		UU_Cfam_GSD_1.0

Nlrp12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,900,786 - 2,931,614 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936994	20,854 - 36,757 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936994	20,848 - 36,757 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NLRP12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	56,402,665 - 56,425,101 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	56,402,617 - 56,425,038 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	52,741,089 - 52,763,504 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NLRP12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	46,507,241 - 46,533,832 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	46,507,410 - 46,533,615 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	26,577,383 - 26,608,988 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Nlrp12
235 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	26
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000043650
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

Markers in Region

D17S610

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	69,030,155 - 69,030,849 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	65,931,532 - 65,932,178 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	64,505,675 - 64,506,320	NCBI	Rnor6.0
Rnor_6.0	10	71,457,449 - 71,458,142	NCBI	Rnor6.0
Rnor_5.0	10	71,370,820 - 71,371,513	UniSTS	Rnor5.0
Rnor_5.0	1	63,492,445 - 63,493,090	UniSTS	Rnor5.0
RGSC_v3.4	1	64,241,600 - 64,242,245	UniSTS	RGSC3.4
RGSC_v3.4	10	72,429,352 - 72,430,045	UniSTS	RGSC3.4
Celera	10	67,958,412 - 67,959,105	UniSTS
Celera	1	63,662,075 - 63,662,720	UniSTS
Cytogenetic Map	1	q12	UniSTS

Genetic Models

This gene Nlrp12 is modified in the following models/strains:

SS-Nlrp12^em1Mcwi

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
7	3	15	35	77	78	47	25	47	6	132	59	17	17	35	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001169142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000086331 ⟹ ENSRNOP00000069711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	65,932,595 - 65,960,934 (+)	Ensembl
Rnor_6.0 Ensembl	1	64,506,735 - 64,534,912 (+)	Ensembl

RefSeq Acc Id:

NM_001169142 ⟹ NP_001162613

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,222 - 74,876,341 (+)	NCBI
mRatBN7.2	1	65,932,808 - 65,960,934 (+)	NCBI
Rnor_6.0	1	64,506,950 - 64,534,991 (+)	NCBI
Rnor_5.0	1	63,493,575 - 63,521,356 (+)	NCBI
RGSC_v3.4	1	64,242,875 - 64,271,212 (+)	RGD
Celera	1	63,663,350 - 63,691,368 (+)	RGD

Sequence:

show sequence

ATGTTGCCAGCTACAGCCAAGGATGCCCTCCATCGACTGTCCACCTACCTGGAAGAACTTGAGG
CTGGGGAACTGAAGAAATTCAAATTATACCTGGGGATTGCGGAGGAACTGGGCCAGGACAAGAT
CCCCAGGGGACGAATGGAGATGGCTGGTCCTCTGGAAATGGCCCAATTGATGGTGGCCCATATG
GGGACAAAGGAGGCTTGGCTTCTGGCTCTCAGCACCTTTGAGAGGATCCACAGGAAGGACCTGT
GGGAGCGAGGACAGGGAGAAGACCTGGTGAGGGTGACTCCAAGTAATGGTCTATGCTCTCTTGA
GAGCCAGTCAACGTGCCTTTCGGACGTCTCTCCTGATGCTCCAAGAAAAGATCCCCAGATAACC
TACAAAGACTATGTCCGAAGGAAATTCCGGCTAATGGAAGACCGCAATGCGCGACTAGGCGAAT
GTGTGAACTTAAGTCATCGTTACACTCGGCTTCTCCTAGTAAAGGAACACTCAAATCCTATCTG
GGCACAGCAAAAACTTCTGGAAACAGGGTGGGAACACTCCAGAACCAGGGGCCACCAGGCTAGC
CCTATCCAAATGGAGACCCTCTTTGAGCCAGATGAAGAACGCCCGGAGCCACCACGCACAGTGG
TATTACAAGGGGCAGCGGGGATGGGGAAGTCCATGTTGACCCACAAAGTGATGTTGGACTGGGC
CGATGGGAGACTCTTCCAAGACCAGTTCGATTATGTCTTCTATATCAGCTGCAGGGAGTTGAAT
AGAAGCCACACCCAGTGCAGTGTACATGACCTCCTCTCCAGCTGCTGGCCAGAGCATGGTGCAC
CCCTCGAGGACCTCATCCGGGCTCCTGATCGTCTTCTATTCATCATCGATGGCTTCCATGAGCT
TCATCCCTCTTTCCATGACGTTCAGGGTCCCTGGTGCCACTGCTGGGAGGAGAAACGACCCACG
GAACTCCTCCTCGGAAGCCTGATTCGGAGGTTGCTTCTGCCCCAGCTCTCTTTGCTCATCACCA
CACGACCCTGTGCACTGGAGAAGCTGCACGGCTTGTTGGAACACCCTAGGCACGTGGAGATCCT
GGGCTTCTCCGAGGCAGAGAGGGAGGAATATTTCTACAGATATTTCCACAACACTGGACAAGCG
AGCCAAGTGTTCAGCTTCATGAGGGACTATGAGCCCCTCTTTACCATGTGTTTTGTTCCCATGG
TGTCCTGGGTGGTCTGCACCTGCTTAAAGCAGCAGCTAGAAAGTGGGGAGCTTTTAAGACAAAC
ATCTAGGACCACCACAGCGGTTTATATGTTCTACCTTCTGAGCCTGATGCAGCCCAAGCCAGGG
ACCCCAACCTTCAAAGTCCCAGCCAACCAGAGAGGCCTGGTCTCTCTGGCTGCAGAGGGCCTCT
GGAATCAGAAGATTCTCTTCGAGGAAGAGGATCTTGGGAAACATGGCCTAGATGGAGCAGAGGT
CTCCACCTTCCTCAACGTGAACATATTCCAGAAGGGCATCAAGTGTGAGAAATTCTACAGCTTC
ATCCACCTGAGTTTCCAGGAATTCTTCACAGCCATGTACTGTGCACTGCACGGCAGAGAGGCGG
TGAGGAGAGCACTGGCTGAGTATGGTTTCTCAGAAAGGAACTTCTTGGCCCACACCGTCCGCTT
TCTCTTTGGCCTCCTCAATGAAGAGATGAGATGCTACCTCGAGAGGAATCTCGGCTGGACCATC
TCCCCTCAGGTCAAGGAGGAAGCATTGGCGTGGATCCAAAACAAGGCTCGAAGTGAGGGCTCCA
CCCTGCAGCATGGCTCCCTGGAGCTTCTCAGCTGCTTGTACGAGATCCAGGAGGAAGACTTCAT
CCAGCAGGCCCTGAGCCACTTTCAGGTGGTTGTTGTCAGAAACCTCTCAACGAAGATGGAGCAC
GTGGTCTGCTCGTTTTGTGCGAGGTACTGCAGAGGCACAGAAGTGCTTCACTTGTATGGGAGTG
CCTATAGTACAGGCGCAGAGGATGGCCCGCCAGAACCTCCAGGAGCCCAGACGCAGTCCACACA
CTCACAGGAAAGGAACATCCTTCCTGACATTTACAGTGCATACCTCTCAGCAACCATCTGCACC
AACTCAAACCTGATCGAGCTGGCCTTGTATCGAAACGCCTTGGGCAGCCAGGGCGTGAGGCTGC
TCTGTCAAGGCCTCCGACATGCAAACTGCAAGCTTCAGAACCTGAGGCTGAAGAGGTGTCACAT
CTCCGGATCAGCCTGCCAGGATCTCGCAGCGGCTATCATCGCCAATAGGAATTTAATCAGGCTG
GACCTCAGTGGCAACAGCATTGGAGTGCTAGGCCTAGAGCTGCTCTGTGAGGGGTTACAGCACC
CCATGTGTAGGCTGCAGATGATCCAGCTGAGGAAGTGTTTGCTGGAGGCTGCGGCTGGCCGAGC
ACTGGCCTCTGTTCTCAGCAACAACTCACATCTTGTAGAACTGGATCTGACAGGAAACCCCTTG
GAGGATTTGGGGCTGAAGTTACTGTGTCAAGGGCTGAGGCACCCAGTCTGCAGGCTGCGGACCT
TGTGGCTGAAGATCTGCCACCTTGGACAAGCTTCCTGTGAAGATCTGGCTTCTACTCTCAAAAT
GAACCAGAGCCTGATGGAGCTGGACCTGGGTCTGAATGACCTTGGGGATTCTGGGGCGCTTCTG
CTGTGTGAGGGCCTCAGGCATCCAGATTGCAAACTCCAGACCCTCCGGCTGGGCATTTGCCGAC
TGGGCTCAGACGCGTGTGCAGGGGTTGCTAGTGTGCTCCAGGTCAACACGTGCCTCCGAGAGCT
GGACCTGAGCTTCAATGACTTGGGAGACAGGGGCCTGTGGCTGCTGGGGGAAGGACTGAGGCAC
CAGACCTGCAGACTCCAGAAGCTCTGGCTGGACAGTTGCGGCCTCACTTCCAAAGCATGTGAGG
ACCTGTCTTCAGTCCTGGGAATCAGTCAGACCCTGAATGAGCTTTATCTGACCAATAATGCTCT
GGGGGACACTGGTGTTCGTCTGCTGTGCAAGAGGCTGAGGCATCCGGGGTGCAAGCTTCGTGTC
CTGTGGCTTTTCGGAATGGACCTGAACAAAGTGACCCACAGGAGGATGGCGGCACTTCGAGTCA
CAAAACCATACCTAGATATTGGGTGCTAAGCAGTAATGCAGAATGGACCAGGTCTTCCGGATGT
TTCCGGCTATGACAGAACTTTAAGGCCTGTCTCTGGTATATGGTGAGATGAAGGTCATCCCCAG
AAACCCGCTAGTGCAACCCTGTCTTGAGGTCAGGAGGCTCAGTAAGTACAGGTTGAGAAAAATT
GAGACCTAAACGCTCAACCTTTGATGGAGCTGGTTGTGTCTGATGTAGACTCCATGCAGACAAA
TTGGCTGGTTAGGTTTGAAGAGCAATAAATCAAGACTACAGAGAAAACA

hide sequence

RefSeq Acc Id:

XM_017588882 ⟹ XP_017444371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,371 - 74,876,341 (+)	NCBI
mRatBN7.2	1	65,932,958 - 65,960,934 (+)	NCBI
Rnor_6.0	1	64,507,153 - 64,538,745 (+)	NCBI

Sequence:

show sequence

GGCTTGGCTTCTGGCTCTCAGCACCTTTGAGAGGATCCACAGGAAGGACCTGTGGGAGCGAGGA
CAGGGAGAAGACCTGGTGAGGGTGACTCCAAGTAATGGTCTATGCTCTCTTGAGAGCCAGTCAA
CGTGCCTTTCGGACGTCTCTCCTGATGCTCCAAGAAAAGACCTTTCCTTCCTCTCTACTAGATC
CCCAGATAACCTACAAAGACTATGTCCGAAGGAAATTCCGGCTAATGGAAGACCGCAATGCGCG
ACTAGGCGAATGTGTGAACTTAAGTCATCGTTACACTCGGCTTCTCCTAGTAAAGGAACACTCA
AATCCTATCTGGGCACAGCAAAAACTTCTGGAAACAGGGTGGGAACACTCCAGAACCAGGGGCC
ACCAGGCTAGCCCTATCCAAATGGAGACCCTCTTTGAGCCAGATGAAGAACGCCCGGAGCCACC
ACGCACAGTGGTATTACAAGGGGCAGCGGGGATGGGGAAGTCCATGTTGACCCACAAAGTGATG
TTGGACTGGGCCGATGGGAGACTCTTCCAAGACCAGTTCGATTATGTCTTCTATATCAGCTGCA
GGGAGTTGAATAGAAGCCACACCCAGTGCAGTGTACATGACCTCCTCTCCAGCTGCTGGCCAGA
GCATGGTGCACCCCTCGAGGACCTCATCCGGGCTCCTGATCGTCTTCTATTCATCATCGATGGC
TTCCATGAGCTTCATCCCTCTTTCCATGACGTTCAGGGTCCCTGGTGCCACTGCTGGGAGGAGA
AACGACCCACGGAACTCCTCCTCGGAAGCCTGATTCGGAGGTTGCTTCTGCCCCAGCTCTCTTT
GCTCATCACCACACGACCCTGTGCACTGGAGAAGCTGCACGGCTTGTTGGAACACCCTAGGCAC
GTGGAGATCCTGGGCTTCTCCGAGGCAGAGAGGGAGGAATATTTCTACAGATATTTCCACAACA
CTGGACAAGCGAGCCAAGTGTTCAGCTTCATGAGGGACTATGAGCCCCTCTTTACCATGTGTTT
TGTTCCCATGGTGTCCTGGGTGGTCTGCACCTGCTTAAAGCAGCAGCTAGAAAGTGGGGAGCTT
TTAAGACAAACATCTAGGACCACCACAGCGGTTTATATGTTCTACCTTCTGAGCCTGATGCAGC
CCAAGCCAGGGACCCCAACCTTCAAAGTCCCAGCCAACCAGAGAGGCCTGGTCTCTCTGGCTGC
AGAGGGCCTCTGGAATCAGAAGATTCTCTTCGAGGAAGAGGATCTTGGGAAACATGGCCTAGAT
GGAGCAGAGGTCTCCACCTTCCTCAACGTGAACATATTCCAGAAGGGCATCAAGTGTGAGAAAT
TCTACAGCTTCATCCACCTGAGTTTCCAGGAATTCTTCACAGCCATGTACTGTGCACTGCACGG
CAGAGAGGCGGTGAGGAGAGCACTGGCTGAGTATGGTTTCTCAGAAAGGAACTTCTTGGCCCAC
ACCGTCCGCTTTCTCTTTGGCCTCCTCAATGAAGAGATGAGATGCTACCTCGAGAGGAATCTCG
GCTGGACCATCTCCCCTCAGGTCAAGGAGGAAGCATTGGCGTGGATCCAAAACAAGGCTCGAAG
TGAGGGCTCCACCCTGCAGCATGGCTCCCTGGAGCTTCTCAGCTGCTTGTACGAGATCCAGGAG
GAAGACTTCATCCAGCAGGCCCTGAGCCACTTTCAGGTGGTTGTTGTCAGAAACCTCTCAACGA
AGATGGAGCACGTGGTCTGCTCGTTTTGTGCGAGGTACTGCAGAGGCACAGAAGTGCTTCACTT
GTATGGGAGTGCCTATAGTACAGGCGCAGAGGATGGCCCGCCAGAACCTCCAGGAGCCCAGACG
CAGTCCACACACTCACAGGAAAGGAACATCCTTCCTGACATTTACAGTGCATACCTCTCAGCAA
CCATCTGCACCAACTCAAACCTGATCGAGCTGGCCTTGTATCGAAACGCCTTGGGCAGCCAGGG
CGTGAGGCTGCTCTGTCAAGGCCTCCGACATGCAAACTGCAAGCTTCAGAACCTGAGGCTGAAG
AGGTGTCACATCTCCGGATCAGCCTGCCAGGATCTCGCAGCGGCTATCATCGCCAATAGGAATT
TAATCAGGCTGGACCTCAGTGGCAACAGCATTGGAGTGCTAGGCCTAGAGCTGCTCTGTGAGGG
GTTACAGCACCCCATGTGTAGGCTGCAGATGATCCATTTTTCAAGTCCCTGCTCCTCCCGAGAA
CTGTGGATGAAGAATAGAACTTGGCCTACTCTTGACCCAAGGCTGAGGAAGTGTTTGCTGGAGG
CTGCGGCTGGCCGAGCACTGGCCTCTGTTCTCAGCAACAACTCACATCTTGTAGAACTGGATCT
GACAGGAAACCCCTTGGAGGATTTGGGGCTGAAGTTACTGTGTCAAGGGCTGAGGCACCCAGTC
TGCAGGCTGCGGACCTTGTGGCTGAAGATCTGCCACCTTGGACAAGCTTCCTGTGAAGATCTGG
CTTCTACTCTCAAAATGAACCAGAGCCTGATGGAGCTGGACCTGGGTCTGAATGACCTTGGGGA
TTCTGGGGCGCTTCTGCTGTGTGAGGGCCTCAGGCATCCAGATTGCAAACTCCAGACCCTCCGG
CTGGGCATTTGCCGACTGGGCTCAGACGCGTGTGCAGGGGTTGCTAGTGTGCTCCAGGTCAACA
CGTGCCTCCGAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAGGGGCCTGTGGCTGCTGGG
GGAAGGACTGAGGCACCAGACCTGCAGACTCCAGAAGCTCTGGCTGGACAGTTGCGGCCTCACT
TCCAAAGCATGTGAGGACCTGTCTTCAGTCCTGGGAATCAGTCAGACCCTGAATGAGCTTTATC
TGACCAATAATGCTCTGGGGGACACTGGTGTTCGTCTGCTGTGCAAGAGGCTGAGGCATCCGGG
GTGCAAGCTTCGTGTCCTGTGGCTTTTCGGAATGGACCTGAACAAAGTGACCCACAGGAGGATG
GCGGCACTTCGAGTCACAAAACCATACCTAGATATTGGGTGCTAAGCAGTAATGCAGAATGGAC
CAGGTCTTCCGGATGTTTCCGGCTATGACAGAACTTTAAGGCCTGTCTCTGGTATATGGTGAGA
TGAAGGTCATCCCCAGAAACCCGCTAGTGCAACCCTGTCTTGAGGTCAGGAGGCTCAGTAAGTA
CAGGTTGAGAAAAATTGAGACCTAAACGCTCAACCTTTGATGGAGCTGGTTGTGTCTGATGTAG
ACTCCATGCAGACAAATTGGCTGGTTAGGTTTGAAGAGCAATAAATCAAGACTACAGAGAAAAC
ACTCTCCAGTTGAGTTCTAGATTATTTCCATGGACCAAGCCTGCCACCTACTGGCCAACATCTA
GAACTACAGTCAGACTAGATTGCAAAAGAGCCAATGTGGGAACAGTACAAGGCAATTTCCCAGA
GGCAACTCAGTATCAAGCAGTAAACCCTGCAGACTTTCCTGGGCACCCCCAGCTTGGCAAACTT
GACTGGACTCAAAATTGGGTATTTTGTACAGCAGGGGGTTAAAAAACTGGGGTGGAGCTAGAAG
TACAAGGCTCCAGAGACACAAATGAGGCGTCAAAATGTGCAATTGGTGAGCTAGGGTTCTGGAC
CAGTTTAAAAGCCTAGCATATGAAACCCTGAACCCTACTTTGCTCAACTATATAGATGTACACA
CCTCCCATAGACAGCCAATGATGGCTATGCCCAGCTATGTATGCTTTTGAATTAACACTTCAAA
ATATCGTGATAAAGATGGCCAGATTATATAAACTATAGCCATACATGGTTCATGAAATGGGGCC
TGGCCCCAATAAACTAGTAGGGCCAGAGATTCTTGCTGGATTAGCAATTACATGGGTCATACCA
GCAATGAGCTAATAGTAAATACCGGGTGTAAGCTCCCTTACAGGGTAGCTTGTTATACCATCCA
GGCTTGCGAACATGCACACACAGGGTAAGTGTTGGAACCTGGATGCCACTAAGCAAAGACCAGA
GATGGCAGAAATGGAAAGGGGACTTATGGGGGTCTGGTTACACACATGATTATATAGTGGCACC
TTTAACCCCAGGAGGCTAGCTTAGTAGGGTGTTTTTCCCCTAAAAATTCCTTTAAGCATGCCTT
GCTCTGGGGTAGTCAGTGCCTGTCCTATTCCTGCTGTTTCTAGCAGTTGTTAGAGAACTTTTGT
AATTAGTTGATTATGATCAATGGAAGCAGGCAGACTTCTAATTCTGTACTTTAAAAACCCAGGA
CCTACCCCAACCATGTTGCTTCCTGAGACACTGAAGCACAAGTCTTCTCTTCAGCTGCTTAGTG
ATCCCGTGCAATTAAGCATGCAACCCAGGGAAGCAAGGGCAAAATATAGCAAATATGGGCCTTA
CAATGGGCACAATTTGAGTCCCGACCCCTAGGAACCACAGAAGCAAATCCTAAAGCCAAAATCT
CAGCCAAAGACATTGAAATTTGAGAACAAGACTTTATTGAACGGTAAAGGTTTGGGGGCTGAGG
GTATGAGGTGGCTCACTGGTTAAGAGCAGCACAGGTTGGCTCGTTCTTGTATGGTTCAATTCAT
AGCACCCACATGGGCAGGTTCCAGGGACTCCGAAGGCACTGATTGATAGGAGATCAACTCTGCT
TAAACCAGCTGTACCCACCTAATGATAGGTAAACCTGGACATGTCTAAAGGTAAACCAGAAATC
CCATCTATTAACCCATTTTAACCTACCCAGGCATGGTGCCCAAATTAGACTAAGTTGAATGAGC
CCTTATTAGTGCATATATGTACAAGGCCACTATGAGCTCAGCTTCTGGGAGACCCACAGCTCCC
TCATACACAGCTGGGACTTATTACCCCCAATCTAATTACAGTAAAGGCCCAGGCCTATTACAGT
AATTTTAAAGGTACAGGGATCTGTGAGTAGTGCCCACAGGAGACACCCAAAAGTAGTAGCACTT
TCTACGCATAATCCAGAAGTGTGCCCCACATTTGAGTCTCACCAAAATGAGCAAGTCGGGTTGA
TTGAAGTCCCGGATGCCTTCTTCCACACAGCAACACACAAAATGGAAGCACTTTCTACTTAAAA
GCTTAGATAGGGCCTCCATTTTGAGCATGGCTATGGTGGTTTTTCCAAGATCCTCCATTCATGC
CTGCAATTCAATCTCTCAATCTCATGAACACTTGCAGTTTAAATACAGTACCTCCTGTCAAATC
CTTCCAGTCTCAGAAGGCTCAGTACTCTTTTCCCCTACCAACTCAACTTTCCCGGAGCTCACTT
GTGGAAATCATAACCCACAGATGACACCCAAACGATGCAACACTTTCCACTTAAACCAGATCAG
AAGAGCGCTCCTACATTTGAGTGCCACCAGGCCCTAAAACCTGGCGGCACTTTTTAAAG

hide sequence

RefSeq Acc Id:

XM_039103730 ⟹ XP_038959658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,025 - 74,876,341 (+)	NCBI
mRatBN7.2	1	65,932,610 - 65,960,934 (+)	NCBI

RefSeq Acc Id:

XM_039103733 ⟹ XP_038959661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,025 - 74,876,341 (+)	NCBI
mRatBN7.2	1	65,932,611 - 65,960,934 (+)	NCBI

RefSeq Acc Id:

XM_063282937 ⟹ XP_063139007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,024 - 74,876,341 (+)	NCBI

RefSeq Acc Id:

XM_063282938 ⟹ XP_063139008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,392 - 74,876,341 (+)	NCBI

RefSeq Acc Id:

XR_010064551

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,024 - 74,885,945 (+)	NCBI

RefSeq Acc Id:

XR_010064552

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	74,848,020 - 74,864,089 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001162613	(Get FASTA)	NCBI Sequence Viewer
	XP_017444371	(Get FASTA)	NCBI Sequence Viewer
	XP_038959658	(Get FASTA)	NCBI Sequence Viewer
	XP_038959661	(Get FASTA)	NCBI Sequence Viewer
	XP_063139007	(Get FASTA)	NCBI Sequence Viewer
	XP_063139008	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84952	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069711.1

RefSeq Acc Id:

NP_001162613 ⟸ NM_001169142

- UniProtKB:

A0A0G2JW23 (UniProtKB/TrEMBL), A6KS45 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLPATAKDALHRLSTYLEELEAGELKKFKLYLGIAEELGQDKIPRGRMEMAGPLEMAQLMVAHM
GTKEAWLLALSTFERIHRKDLWERGQGEDLVRVTPSNGLCSLESQSTCLSDVSPDAPRKDPQIT
YKDYVRRKFRLMEDRNARLGECVNLSHRYTRLLLVKEHSNPIWAQQKLLETGWEHSRTRGHQAS
PIQMETLFEPDEERPEPPRTVVLQGAAGMGKSMLTHKVMLDWADGRLFQDQFDYVFYISCRELN
RSHTQCSVHDLLSSCWPEHGAPLEDLIRAPDRLLFIIDGFHELHPSFHDVQGPWCHCWEEKRPT
ELLLGSLIRRLLLPQLSLLITTRPCALEKLHGLLEHPRHVEILGFSEAEREEYFYRYFHNTGQA
SQVFSFMRDYEPLFTMCFVPMVSWVVCTCLKQQLESGELLRQTSRTTTAVYMFYLLSLMQPKPG
TPTFKVPANQRGLVSLAAEGLWNQKILFEEEDLGKHGLDGAEVSTFLNVNIFQKGIKCEKFYSF
IHLSFQEFFTAMYCALHGREAVRRALAEYGFSERNFLAHTVRFLFGLLNEEMRCYLERNLGWTI
SPQVKEEALAWIQNKARSEGSTLQHGSLELLSCLYEIQEEDFIQQALSHFQVVVVRNLSTKMEH
VVCSFCARYCRGTEVLHLYGSAYSTGAEDGPPEPPGAQTQSTHSQERNILPDIYSAYLSATICT
NSNLIELALYRNALGSQGVRLLCQGLRHANCKLQNLRLKRCHISGSACQDLAAAIIANRNLIRL
DLSGNSIGVLGLELLCEGLQHPMCRLQMIQLRKCLLEAAAGRALASVLSNNSHLVELDLTGNPL
EDLGLKLLCQGLRHPVCRLRTLWLKICHLGQASCEDLASTLKMNQSLMELDLGLNDLGDSGALL
LCEGLRHPDCKLQTLRLGICRLGSDACAGVASVLQVNTCLRELDLSFNDLGDRGLWLLGEGLRH
QTCRLQKLWLDSCGLTSKACEDLSSVLGISQTLNELYLTNNALGDTGVRLLCKRLRHPGCKLRV
LWLFGMDLNKVTHRRMAALRVTKPYLDIGC

hide sequence

RefSeq Acc Id:	XP_017444371 ⟸ XM_017588882
- Peptide Label:	isoform X3
- UniProtKB:	A6KS45 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYALLRASQRAFRTSLLMLQEKTFPSSLLDPQITYKDYVRRKFRLMEDRNARLGECVNLSHRY TRLLLVKEHSNPIWAQQKLLETGWEHSRTRGHQASPIQMETLFEPDEERPEPPRTVVLQGAAGM GKSMLTHKVMLDWADGRLFQDQFDYVFYISCRELNRSHTQCSVHDLLSSCWPEHGAPLEDLIRA PDRLLFIIDGFHELHPSFHDVQGPWCHCWEEKRPTELLLGSLIRRLLLPQLSLLITTRPCALEK LHGLLEHPRHVEILGFSEAEREEYFYRYFHNTGQASQVFSFMRDYEPLFTMCFVPMVSWVVCTC LKQQLESGELLRQTSRTTTAVYMFYLLSLMQPKPGTPTFKVPANQRGLVSLAAEGLWNQKILFE EEDLGKHGLDGAEVSTFLNVNIFQKGIKCEKFYSFIHLSFQEFFTAMYCALHGREAVRRALAEY GFSERNFLAHTVRFLFGLLNEEMRCYLERNLGWTISPQVKEEALAWIQNKARSEGSTLQHGSLE LLSCLYEIQEEDFIQQALSHFQVVVVRNLSTKMEHVVCSFCARYCRGTEVLHLYGSAYSTGAED GPPEPPGAQTQSTHSQERNILPDIYSAYLSATICTNSNLIELALYRNALGSQGVRLLCQGLRHA NCKLQNLRLKRCHISGSACQDLAAAIIANRNLIRLDLSGNSIGVLGLELLCEGLQHPMCRLQMI HFSSPCSSRELWMKNRTWPTLDPRLRKCLLEAAAGRALASVLSNNSHLVELDLTGNPLEDLGLK LLCQGLRHPVCRLRTLWLKICHLGQASCEDLASTLKMNQSLMELDLGLNDLGDSGALLLCEGLR HPDCKLQTLRLGICRLGSDACAGVASVLQVNTCLRELDLSFNDLGDRGLWLLGEGLRHQTCRLQ KLWLDSCGLTSKACEDLSSVLGISQTLNELYLTNNALGDTGVRLLCKRLRHPGCKLRVLWLFGM DLNKVTHRRMAALRVTKPYLDIGC hide sequence

Ensembl Acc Id:

ENSRNOP00000069711 ⟸ ENSRNOT00000086331

RefSeq Acc Id:	XP_038959658 ⟸ XM_039103730
- Peptide Label:	isoform X2
- UniProtKB:	A6KS45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959661 ⟸ XM_039103733
- Peptide Label:	isoform X4
- UniProtKB:	A6KS45 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139007 ⟸ XM_063282937
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063139008 ⟸ XM_063282938
- Peptide Label:	isoform X3

Protein Domains

NACHT Pyrin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JW23-F1-model_v2	AlphaFold	A0A0G2JW23	1-1054	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309415	AgrOrtholog
BioCyc Gene	G2FUF-61010	BioCyc
Ensembl Genes	ENSRNOG00000060745	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086331.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.533.10	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	DEATH-like	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	NACHT_NTPase	UniProtKB/TrEMBL
	NATCH-assoc	UniProtKB/TrEMBL
	NLRC_HD2	UniProtKB/TrEMBL
	NLRP_innate_immun_reg	UniProtKB/TrEMBL
	NOD2_WH	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Pyrin	UniProtKB/TrEMBL
KEGG Report	rno:292541	UniProtKB/TrEMBL
NCBI Gene	292541	ENTREZGENE
PANTHER	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	UniProtKB/TrEMBL
	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	UniProtKB/TrEMBL
Pfam	FISNA	UniProtKB/TrEMBL
	LRR_6	UniProtKB/TrEMBL
	NACHT	UniProtKB/TrEMBL
	NLRC4_HD2	UniProtKB/TrEMBL
	NOD2_WH	UniProtKB/TrEMBL
	PAAD_DAPIN	UniProtKB/TrEMBL
PhenoGen	Nlrp12	PhenoGen
PROSITE	DAPIN	UniProtKB/TrEMBL
	NACHT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000060745	RatGTEx
SMART	FISNA	UniProtKB/TrEMBL
	LRR_RI	UniProtKB/TrEMBL
	PYRIN	UniProtKB/TrEMBL
Superfamily-SCOP	DEATH_like	UniProtKB/TrEMBL
	RNI-like	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2JW23	ENTREZGENE, UniProtKB/TrEMBL
	A6KS45	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Nlrp12	NLR family, pyrin domain containing 12	Nalp12	NACHT, leucine rich repeat and PYD containing 12	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Nalp12	NACHT, leucine rich repeat and PYD containing 12	Nalp12_predicted	NACHT, leucine rich repeat and PYD containing 12 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Nalp12_predicted	NACHT, leucine rich repeat and PYD containing 12 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM