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Gene: Zbtb39 (zinc finger and BTB domain containing 39) Rattus norvegicus

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Symbol:

Zbtb39

Name:

zinc finger and BTB domain containing 39

RGD ID:

1306532

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZBTB39 (zinc finger and BTB domain containing 39); INTERACTS WITH 6-propyl-2-thiouracil; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC299510; RGD1306532; similar to Hypothetical zinc finger protein KIAA0352; zinc finger and BTB domain-containing protein 39

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	65,462,255 - 65,469,806 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	65,462,018 - 65,485,601 (+)	Ensembl				GRCr8
mRatBN7.2	7	63,576,998 - 63,584,549 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	63,576,917 - 63,589,210 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	65,466,218 - 65,473,769 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	67,668,508 - 67,676,059 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	67,469,790 - 67,477,346 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	71,036,581 - 71,044,057 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	71,036,565 - 71,044,045 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	71,209,250 - 71,216,726 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	67,731,533 - 67,739,030 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	60,716,015 - 60,723,569 (+)	NCBI		Celera
RGSC_v3.1	7	67,753,981 - 67,756,162 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

Cuprizon (EXP)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

gentamycin (EXP)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

ozone (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pomalidomide (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

tributylstannane (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zbtb39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	65,462,255 - 65,469,806 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	65,462,018 - 65,485,601 (+)	Ensembl				GRCr8
mRatBN7.2	7	63,576,998 - 63,584,549 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	63,576,917 - 63,589,210 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	65,466,218 - 65,473,769 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	67,668,508 - 67,676,059 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	67,469,790 - 67,477,346 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	71,036,581 - 71,044,057 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	71,036,565 - 71,044,045 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	71,209,250 - 71,216,726 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	67,731,533 - 67,739,030 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	60,716,015 - 60,723,569 (+)	NCBI		Celera
RGSC_v3.1	7	67,753,981 - 67,756,162 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

ZBTB39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	56,998,836 - 57,006,546 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	56,998,836 - 57,006,546 (-)	Ensembl			hg38	GRCh38
GRCh37	12	57,392,620 - 57,400,330 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	55,678,885 - 55,686,497 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	57,046,548 - 57,054,160 (-)	NCBI		Celera
Cytogenetic Map	12	q13.3	NCBI
HuRef	12	54,431,386 - 54,439,066 (-)	NCBI		HuRef
CHM1_1	12	57,360,367 - 57,368,044 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	56,966,705 - 56,974,415 (-)	NCBI		T2T-CHM13v2.0

Zbtb39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	127,575,399 - 127,583,218 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	127,575,407 - 127,583,218 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	127,739,530 - 127,747,349 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	127,739,538 - 127,747,349 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	127,176,594 - 127,184,405 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	127,142,487 - 127,150,298 (+)	NCBI		MGSCv36	mm8
Celera	10	130,134,148 - 130,141,950 (+)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	74.98	NCBI

Zbtb39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	4,754,262 - 4,761,429 (-)	Ensembl
ChiLan1.0	NW_004955458	4,754,262 - 4,761,429 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	37,335,249 - 37,342,975 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	37,332,028 - 37,339,745 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	31,921,227 - 31,928,944 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	32,175,947 - 32,182,184 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	32,176,096 - 32,178,234 (+)	Ensembl			panPan2	panpan1.1

ZBTB39
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	1,146,567 - 1,154,122 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	1,213,300 - 1,218,585 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	1,159,867 - 1,165,152 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	1,159,022 - 1,165,152 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	1,136,750 - 1,142,034 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	1,378,586 - 1,383,872 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	1,503,369 - 1,508,654 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zbtb39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	57,647,618 - 57,651,588 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	1,218,847 - 1,220,979 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	1,214,909 - 1,221,112 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	22,312,521 - 22,314,655 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	22,308,630 - 22,316,317 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	24,064,969 - 24,072,688 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	52,909,182 - 52,916,899 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	52,913,176 - 52,915,314 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	193,056,771 - 193,064,488 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	10,927,936 - 10,935,353 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624802	10,927,858 - 10,935,353 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zbtb39
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	206,187,189 - 206,194,810 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zbtb39
24 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	734
Count of miRNA genes:	301
Interacting mature miRNAs:	386
Transcripts:	ENSRNOT00000005685
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	49137999	67614020	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH129996

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	63,584,295 - 63,584,500 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	71,043,826 - 71,044,030	NCBI	Rnor6.0
Rnor_5.0	7	71,216,495 - 71,216,699	UniSTS	Rnor5.0
RGSC_v3.4	7	67,738,799 - 67,739,003	UniSTS	RGSC3.4
Celera	7	60,723,338 - 60,723,542	UniSTS
RH 3.4 Map	6	953.91	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH133901

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	63,582,124 - 63,582,277 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	71,041,655 - 71,041,807	NCBI	Rnor6.0
Rnor_5.0	7	71,214,324 - 71,214,476	UniSTS	Rnor5.0
RGSC_v3.4	7	67,736,628 - 67,736,780	UniSTS	RGSC3.4
Celera	7	60,721,167 - 60,721,319	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	90	59	6	354	190	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005685 ⟹ ENSRNOP00000005685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	71,036,565 - 71,044,045 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094578 ⟹ ENSRNOP00000091432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	65,462,176 - 65,474,998 (+)	Ensembl
mRatBN7.2 Ensembl	7	63,576,917 - 63,589,210 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125451 ⟹ ENSRNOP00000112423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	65,462,132 - 65,467,193 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132774 ⟹ ENSRNOP00000098853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	65,462,018 - 65,485,601 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137429 ⟹ ENSRNOP00000100344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	65,462,159 - 65,474,998 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155248 ⟹ ENSRNOP00000109986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	65,464,007 - 65,475,279 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169548 ⟹ ENSRNOP00000112248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	65,462,156 - 65,467,102 (+)	Ensembl

RefSeq Acc Id:

NM_001130537 ⟹ NP_001124009

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	65,462,255 - 65,469,806 (+)	NCBI
mRatBN7.2	7	63,576,998 - 63,584,549 (+)	NCBI
Rnor_6.0	7	71,036,581 - 71,044,057 (+)	NCBI
Rnor_5.0	7	71,209,250 - 71,216,726 (+)	NCBI
RGSC_v3.4	7	67,731,533 - 67,739,030 (+)	RGD
Celera	7	60,716,015 - 60,723,569 (+)	RGD

Sequence:

show sequence

GGATGGAGAGTCTGGCCGCAGCCACTTTATAGACGTGTGATAACCTGTGGGTAAACGTTTGTGT
GAGGCGGCGGCGGCGGCGGCGATGGTGCTCGGGCCCCGCGGAGCCGGATTGACCTTGCTGATAC
TGAGGCAACTTCCCAGGAGCTGCTAAGATGGGCATGAGGATCAAACTGCAAAGCAGCAACCACC
CCAACAACCTGCTGAAGGAACTCAACAAGTGCCGGCTGTCAGAGACCATGTGCGATGTCACCAT
CGTGGTGGGGAGCCGCTCCTTCCCTGCCCACAAAGCCGTGCTGGCTTGTGCCGCTGGTTACTTC
CAGAACCTCTTCTTAAACACCGGGCTAGATGCTGCCCGCACCTATGTGGTGGACTTCATTACTC
CTGCCAACTTTGAGAAGATCCTGAGCTTTGTGTACACATCAGAGCTCTTCACAGACCTGATCAA
CGTTGGGGTCATCTATGAGGTCGCTGAGCGTCTGGGTATGGAGGACCTCCTCCGAGCCTGCCAT
TCCACTTTCCCTGACCTAGAGAGCACCACGATCGCTAAGTCCTTAACCAGTACCAGTGACAGCC
CATGTGTCACTCTGAGTTGTCCTTCAGTTGATCCCACCCACCCCCTGGGAGAGCTCCGGGGGAG
TGGGGAACACTTTGGTCCCGATAGAAACTATGCACTGCCTACTGATGCAGGAGGAAGCTATAAA
GAGGAAGAGCGGGCTATCGCGGGCGACACTAATCATAGCTTGCCTCTGCCACAAGTACCACTGC
CACCAAAGTCAGAAGACCATGACGCCCCTGTTCCCTTCACTTCTGTTCCTAGTATGGTGACCCC
ACCACCAGTCCTAGGCACGGTCAGCACAGGCATCCAGACCAGCACTACAAGTTCTTGCCAGCCA
TACAAAGTTCAAAGCAATGGAGACTTCGGTAAAAGCAACTTCTTCACCTCGGATAATGCTCTAG
ACATTACACCCCAGACCAATCCCTGTTTGAGCAATAACGACCAGGCCAGAGACCCAGGCTTTGG
GCAGATGGATGAGCTCCAGCTGGAGGACTTGGGGGACGAGGATCTGCAGTTTGAGGACCCAGCT
GAAGACCTTGGGACCACCGAGGAGGTGATTGAGTTGAGCGATGACAGCGAGGACGACCTGGCCT
TCGGTGACAACCGGGAGAATAAGGCCATGCCTTGCCAGGTATGCAAGAAAGTCCTAGAGCCCAA
CATCCAGCTGATAAGGCAGCATGCTCGGGACCATGTAGACTTGCTCACAGGCAACTGCAAGGTG
TGTGAGACCCACTTCCAGGACCGAAACTCCCGGGTGACCCACGTCCTGTCTCACATCGGCATTT
TCCTGTTTTCCTGCGACATGTGTGAGACAAAGTTCTTCACCCAGTGGCAGCTGACCCTGCACCG
GCGGGATGGAATATTTGAGAACAATGTCATTGTCCACCCTAACGAACCCCTGTCTGGGAAGCTG
GGTCTCTTCCCAGGGGCAGCCTCCCCAGAGTTGAAATGTGCTGCCTGTGGGAAAGCGTTGGCCA
AAGATTTCCATGTGGTCCGTGGCCACATCCTGGAGCACGTGAGTTTGAAGGGCCAGGCCTGCAG
TGTCTGCGATCAGCGCCACCTCAACCTATGCAGCCTCATGTGGCACACGCTCTCCCATCTGGGC
ATTTCCGTCTTCTCCTGTTCTGTCTGTGCCAGTAGTTTTGTAGACTGGCACCTTCTAGAGAAGC
ACATGGCTGTGCACCAGAGCCTGGAGGACGTCCTGTTCCGCTGCCACTTATGCAGCCAGAGCTT
CAGGTCTGAGGCAGCCTACCGCTACCACGTCAGCCAGCACAAGTGTAGCAGTGGCCTTGACCCA
CGTCCCGCTGTGGGGCTACCACACCTAGCCCTCCAGAAGCGGAAGCTGCCCGCTGAGGACTTTC
TGAGTGAGGAGCTGGCTCTGCAGGGCCAACCAGGGAATAGTAAGTACAGCTGCAAGGTCTGTGG
CAAAAGGTTCGCCCACACAAGCGAGTTCAACTACCACCGACGGATCCACACAGGCGAGAAACCT
TACCAGTGCAAGGTTTGCCACAAATTCTTCCGAGGTCGCTCGACCATCAAGTGCCACCTCAAGA
CGCACTCAGGGGCACTCATGTACCGCTGCACCGTCTGTGGCCACTACAGTTCCACCCTTAACCT
TATGAGTAAACATGTCGGTGTGCACAAAGGCAGCCTCCCACCTGACTTCACCATCGAGCAGACC
TTCATGTACATTATACATTCCAAAGAGGCTGAAAAGAACCCGGACAGCTGACTGGGAACCCGCA
GAGCCCGAGGGAGCTCCCAGGTGGCCGCCGGGATAGTGATTTTCTAAAGGCTGTCAGTCCTTCC
CCAGCTGACGCTACAGTTTGCCTTGTTTGTGTTGTGTTGAGAGAAGAAATAGCACATAAGCTGT
TACTGCTTTTGAAAGGCAACAGCCCTGTTACATTTACCTCCTTACCTGTTCTCGCCCACAGAGG
GCTGCATCTTGATTTTTGAGGCTGGCTTTAGGATCTAGTCAAGCAGCCGGGTTAAACTAGGTCC
CCTTCGCCGGTTTCTCTAGTTTTAGTTTACTGATAGGTTTTATGCTGCTAAGAGTCTGACCAAC
AGCCTCACTCGATGGGGTTTTCACTGTGGCTGTGACTGCCAGTCTTTGGCCAGACCACAGCTGT
GAGGAGGTTTGGGGATTGTGGTCATTCAGAAGGGACTAGCAGCAGGGCAGTTCATGTCGGGTAC
CCACGCCTCCTCAGCAGGGGCAAGGTGTCAGGAGCGGAGGGCACTACTTGCTCCACACCTCGGC
TCTCCTGATTGGACGATTGAACGGTGGAAGTCTCTTGGCAGCTAGATCCAAACTGGGGACCAGG
CTTTCTGTTTAGGTTGGAAAGCTTTGGGGTACCCCATGGTGCCACCAGACGGGGCAGCCTCCAT
GGATGGAAGAAGGGCTCTTCCTTTCTCCTCATTTCCAAAGAAGCGCGGTTTTGTAGAGCGAAAA
CCCTGGACGTCAAACCTTCTGTCAAGAGCAGGGAGGACAGAGAGCCGCCTCAGTGTAGTCGTCT
GCCATCTGGCTACCTCCGTAAACTTCCGTCTCCTGGGCATGGAGGAGAGGTCTCAGACAGCAGC
AGTCTTGCCTTAATTTACATCGAGTCTCCCACTCAGGACGGTTTAACCTACAGTGTAGATGAGA
AGACCATGTGAGTTTATGGTGGAGCATGAGCCCTTCTGGATTAAAGGAACCTGCGTCACCGGTG
ACTGCATGGCAGGGTGTGCATTCTGACTGTCCCAGTTGGGTAACTTGTTTACTTGGTGGTAACA
GTGTGGGAGTTTGGCAGTTCACCTTTGACCTGCTGGAATTATCCTGATCTGTCATTGCATCACC
CCCAGGGGGCGCTCTTGGATGGTAGCTGGCTTAGGCCTTCTGCGCAACTGTTTGGCTCCATTCT
TAGTCTATGAAGGGGTCTTGCCCAAAAGAGGCTGGAGAGGACCCTTGATCTTGCATACTTATAA
GTAGCTCATACTACCTCACCCTGCTCAGGTGAGCTCTAAGTCCCGAATTTTGGGCCCAGCCACC
GACACTGCCCCCCCCCCCCAGTGGGACTCAGCCGCACTCTGGGCTGTTTCATAAACAAGTGGTT
TTAATTAACTCACAAAGCCTTTCTAGACATTAATATTTATTTTATTATTATTATTATTTTGTTT
TGTATATGTACTACCCAGCATCTCTTTTCGATAAATGACTTTAGGAAAATGAGTTTCTCAAGCA
AGGAGCCACATTCCAGCAGAGGGTTATGGCTGCAGAGGGGAGAACAGGGGTGTAACTAGGAGAG
AGTGTGCCAGGCCTTTTAAGCAGCACAGTTTCTCCAAGCATAGTCTCTAGCAGAGCAAACTCAG
ATCAGTCACAGGAAGAAGGTGTTTGCACAGTTTTTTATCCTTCCGACATAGGGAGCATCCTATC
CCTATATATTAAGACACAGAGGCAAACCAAAGCAGTATACAGTTGGGCTGGCCGGCCAACTTTC
CCAGGGCTTTGAACTGAGAAAGCCGGTGAGTTGGTGCCAAGACCTTCCTGAGCTGAATGATGCA
GCTCAAACAGTTAAGGACACCCCTCCCTCCCCATCTGAACGTGGTGTTTTCACAGGGAAGAGGT
TGCTGTCGCTTTTAGTTTCTGACTTACAGTTTACACTGGGGATGTGTATCACACTACAATGACA
GATCTGCTGGAATTTCTAAGCTTCCCCTCCCTAGATTGCTGCTGAGGAGTGAGTACCGAATGGT
TGCTGAGATCGGAGAAACCCTTTTCCTTAGCATAAGGCATTGTGGATGCTGGGTGGTCCGTGTA
CTTAACTTGAAACTGTGAAGTTTTCCCTTTTTGCCATGAACCAAAAAGCAGATCCTTTGAAGTT
TTGTCCTTGGAACACTAAAACACAAACTGTATCTTCTGATCCCTTCAGGTTAATTGATCAGGGA
GGTCCAGTTGGTCCCGTTAGACAGGCAGCCATTGGGACCAGTAGCTCAGGAGGCTCATTGCCCA
AACCATGCCTCTTCGGGTAGCCCCATGTTCGGACCAGTCTCCCCTTCTGTGTGAAGTTGTATTT
GCTTTCCCTGCAGCTAGTTCTTCCTTCTCTTGATGAGATTTACTCAAAACATTACTTGGTAGTG
AAGGGTACTCCAGGACCCCTGATGGGAGGTGTTAACTTTATTTTGCATTTTTAACTTAACACCC
ATTTGATTTCACGCCCCCTTCATCCCTGGATTCCCACTTAGTACTATTTCCTGCTGTATCACAG
TAGAATTCTCTCTGACCTTTGAATGCTCTGTCTTTGTTTGTTCCCCGTCCCCTGCCTTTTATTT
TATTTTTTGGTCTGCACTCAGAACCAGCTGTACAGTGTTCAGAACTGTCGTTCAACAATTATTA
GGAGTATCTAGTTGGCTATTTGAAGGACATTAAGCCGGACTTGGGGACATCCCTGGCTCGTTTC
TAAGGGGAAATTACAATGTTGATGTGGCACACTGGCATTAACAGCATGTGCTGCTTGTGGCCAG
AAGGTGTGTCCACACATGCTGGTGTCCCCTGACAGCTCCATGATGCCAGGGACATCAGAAAGCC
CTACTGAACGAACCCTGGTATTTGGTTCTAAATTTTAAGATTCTGTGGAGTTCCTACAGTTCAC
GGCCAGTTGGGAAGAAAAGAGGTGTTGGTGGGGTCAGGTGACCCTAAGAACAGGAAAGACATAG
GCGAGAATTACTTTTGACTTTATTGTGACCTATCCCCAGCCCCTTGTCTACAGGGCAAACCTGT
AAGCCTCAGAACTTTTCACCCAGGCAGGACTTTGCTACTGATTATCTTCCTTTTCTGGGTTCCT
GCTGTGCTCTCTCCACCAAACCCTAGACTACTCAACCTTGAAAGTGAATTCAGATCCCTTTATA
CATGGACTCTGAATTCGTTGGCATGGTAGTGGGCCCTATGAAATGGTCTTTGCCTGGCTGGGAG
TGTGTACACGTCCCAGTCACATCAAGTGAGACCGAAAGTGGGTGCACGTATACATCTCCGTGTG
ATGGTACGTCATGATCAGTGTCTAAGAAGACGCCCCCTGTGGCAGTGACCCTGACATTTCCCCT
CTGCCAGTCCCCACCCACCCCATCTGGAGTAGCTCAAGTCTCCTGTGAGGCAGAGAGGCCGTTG
CTGTCTAACTCCTTCCATTAAATTAAGAAGTACTGACCTCCTAAATATTTAAGTGTTTACTATC
TGCTGTAAAGTTTTGTATATTTTGTAAACCTTTCCCTCCCCAAAACAGTAGACGTCTAAAATCG
TACATCTGATTCTTTTCTATTCCATTGTTCAGCACAAAGTGTGGTTTTTATTTAGAATAAAAAA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001124009	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM16451	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000091432.1
	ENSRNOP00000098853.1
	ENSRNOP00000100344.1
	ENSRNOP00000109986.1
	ENSRNOP00000112248.1
	ENSRNOP00000112423
	ENSRNOP00000112423.1

RefSeq Acc Id:

NP_001124009 ⟸ NM_001130537

- UniProtKB:

A0A8I6ARN3 (UniProtKB/TrEMBL), A6HQX1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGMRIKLQSSNHPNNLLKELNKCRLSETMCDVTIVVGSRSFPAHKAVLACAAGYFQNLFLNTGL
DAARTYVVDFITPANFEKILSFVYTSELFTDLINVGVIYEVAERLGMEDLLRACHSTFPDLEST
TIAKSLTSTSDSPCVTLSCPSVDPTHPLGELRGSGEHFGPDRNYALPTDAGGSYKEEERAIAGD
TNHSLPLPQVPLPPKSEDHDAPVPFTSVPSMVTPPPVLGTVSTGIQTSTTSSCQPYKVQSNGDF
GKSNFFTSDNALDITPQTNPCLSNNDQARDPGFGQMDELQLEDLGDEDLQFEDPAEDLGTTEEV
IELSDDSEDDLAFGDNRENKAMPCQVCKKVLEPNIQLIRQHARDHVDLLTGNCKVCETHFQDRN
SRVTHVLSHIGIFLFSCDMCETKFFTQWQLTLHRRDGIFENNVIVHPNEPLSGKLGLFPGAASP
ELKCAACGKALAKDFHVVRGHILEHVSLKGQACSVCDQRHLNLCSLMWHTLSHLGISVFSCSVC
ASSFVDWHLLEKHMAVHQSLEDVLFRCHLCSQSFRSEAAYRYHVSQHKCSSGLDPRPAVGLPHL
ALQKRKLPAEDFLSEELALQGQPGNSKYSCKVCGKRFAHTSEFNYHRRIHTGEKPYQCKVCHKF
FRGRSTIKCHLKTHSGALMYRCTVCGHYSSTLNLMSKHVGVHKGSLPPDFTIEQTFMYIIHSKE
AEKNPDS

hide sequence

Ensembl Acc Id:

ENSRNOP00000005685 ⟸ ENSRNOT00000005685

Ensembl Acc Id:

ENSRNOP00000091432 ⟸ ENSRNOT00000094578

Ensembl Acc Id:

ENSRNOP00000100344 ⟸ ENSRNOT00000137429

Ensembl Acc Id:

ENSRNOP00000109986 ⟸ ENSRNOT00000155248

Ensembl Acc Id:

ENSRNOP00000098853 ⟸ ENSRNOT00000132774

Ensembl Acc Id:

ENSRNOP00000112248 ⟸ ENSRNOT00000169548

Ensembl Acc Id:

ENSRNOP00000112423 ⟸ ENSRNOT00000125451

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZC02-F1-model_v2	AlphaFold	D3ZC02	1-711	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695270

Promoter ID:

EPDNEW_R5794

Type:

single initiation site

Name:

Zbtb39_1

Description:

zinc finger and BTB domain containing 39

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	71,036,541 - 71,036,601	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306532	AgrOrtholog
BioCyc Gene	G2FUF-33724	BioCyc
Ensembl Genes	ENSRNOG00000004306	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000094578.2	UniProtKB/TrEMBL
	ENSRNOT00000125451	ENTREZGENE
	ENSRNOT00000125451.1	UniProtKB/TrEMBL
	ENSRNOT00000132774.1	UniProtKB/TrEMBL
	ENSRNOT00000137429.1	UniProtKB/TrEMBL
	ENSRNOT00000155248.1	UniProtKB/TrEMBL
	ENSRNOT00000169548.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	ZBTB39_BTB_POZ	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:299510	UniProtKB/TrEMBL
NCBI Gene	299510	ENTREZGENE
PANTHER	ZINC FINGER AND BTB DOMAIN CONTAINING 39	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb39	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004306	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6ARN3	ENTREZGENE, UniProtKB/TrEMBL
	A6HQX1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zbtb39	zinc finger and BTB domain containing 39	Zbtb39_predicted	zinc finger and BTB domain containing 39 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Zbtb39_predicted	zinc finger and BTB domain containing 39 (predicted)	RGD1306532_predicted	similar to Hypothetical zinc finger protein KIAA0352 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306532_predicted	similar to Hypothetical zinc finger protein KIAA0352 (predicted)	LOC299510_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC299510_predicted	similar to Hypothetical zinc finger protein KIAA0352 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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