Zfp110 (zinc finger protein 110) - Rat Genome Database

Name: Zfp110
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp110 (zinc finger protein 110) Rattus norvegicus

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Symbol:

Zfp110

Name:

zinc finger protein 110

RGD ID:

1306339

Description:

Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and neurotrophin p75 receptor binding activity. Predicted to be involved in several processes, including neuron apoptotic process; regulation of JNK cascade; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within extrinsic apoptotic signaling pathway and retinal cell apoptotic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human ZNF274 (zinc finger protein 274); PARTICIPATES IN neurotrophic factor signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC308362; neurotrophin receptor-interacting factor 1; Nrif1; zinc finger protein 274

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF274 (zinc finger protein 274)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp110 (zinc finger protein 110)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf274 (zinc finger protein 274)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF274 (zinc finger protein 274)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF274 (zinc finger protein 274)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf274 (zinc finger protein 274)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC100518738 (neurotrophin receptor-interacting factor homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF274 (zinc finger protein 274)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf274 (zinc finger protein 274)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zfp110 (zinc finger protein 110)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF274 (zinc finger protein 274)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp369 (zinc finger protein 369)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI		GRCr8
mRatBN7.2	1	73,445,303 - 73,461,112 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,445,336 - 73,461,086 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	78,833,035 - 78,848,255 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,397,388 - 87,412,608 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,588,102 - 80,603,322 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,741,769 - 65,757,709 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,742,089 - 65,756,528 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	66,552,907 - 66,568,729 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	72,735,178 - 72,750,419 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	72,813,288 - 72,828,528 (+)	NCBI
Celera	1	60,370,573 - 60,385,809 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Nerve Degeneration (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-pilocarpine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

apigenin (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

deguelin (ISO)

Dibutyl phosphate (ISO)

diethyl malate (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

gemcitabine (ISO)

gentamycin (EXP)

geraniol (ISO)

methapyrilene (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylseleninic acid (ISO)

N-ethyl-N-nitrosourea (ISO)

nefazodone (EXP)

nimesulide (EXP)

phenobarbital (ISO)

picoxystrobin (ISO)

piroxicam (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (ISO)

extrinsic apoptotic signaling pathway (ISO)

neuron apoptotic process (ISO)

regulation of DNA-templated transcription (IEA)

regulation of JNK cascade (ISO)

regulation of transcription by RNA polymerase II (IBA)

retinal cell apoptotic process (ISO)

Cellular Component

cytoplasm (ISO)

nucleolus (IEA)

nucleus (IEA,ISO)

Molecular Function

chromatin binding (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

neurotrophin p75 receptor binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

neurotrophic factor signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10545116	PMID:11750124	PMID:12477932	PMID:15668238	PMID:16252010	PMID:21170338	PMID:27029610

Genomics

Comparative Map Data

Zfp110
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI		GRCr8
mRatBN7.2	1	73,445,303 - 73,461,112 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,445,336 - 73,461,086 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	78,833,035 - 78,848,255 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,397,388 - 87,412,608 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,588,102 - 80,603,322 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,741,769 - 65,757,709 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,742,089 - 65,756,528 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	66,552,907 - 66,568,729 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	72,735,178 - 72,750,419 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	72,813,288 - 72,828,528 (+)	NCBI
Celera	1	60,370,573 - 60,385,809 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

ZNF274
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	58,183,061 - 58,213,562 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	58,183,029 - 58,213,562 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	58,694,428 - 58,724,928 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	63,386,208 - 63,416,739 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	63,386,207 - 63,416,739	NCBI
Celera	19	55,738,321 - 55,768,855 (+)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	55,004,651 - 55,035,056 (+)	NCBI		HuRef
CHM1_1	19	58,688,612 - 58,719,124 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	61,276,790 - 61,310,024 (+)	NCBI		T2T-CHM13v2.0

Zfp110
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,565,225 - 12,584,513 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,568,688 - 12,584,504 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	12,834,761 - 12,850,586 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	12,834,761 - 12,850,577 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	13,420,159 - 13,435,933 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	11,735,240 - 11,750,756 (+)	NCBI		MGSCv36	mm8
Celera	7	10,459,128 - 10,474,934 (+)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.66	NCBI

Znf274
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955584	922,807 - 943,352 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF274
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	64,430,850 - 64,489,570 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	66,218,857 - 66,277,621 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	55,163,153 - 55,221,933 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	63,989,785 - 64,048,097 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	64,017,183 - 64,048,097 (+)	Ensembl	panpan1.1		panPan2

ZNF274
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	99,696,295 - 99,719,559 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	99,697,185 - 99,719,455 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	100,091,683 - 100,114,373 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	100,337,632 - 100,360,324 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	100,337,632 - 100,359,785 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	99,982,841 - 100,005,531 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	99,695,065 - 99,717,747 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	100,450,336 - 100,473,026 (-)	NCBI		UU_Cfam_GSD_1.0

Znf274
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	33,751 - 46,294 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936897	657,094 - 672,964 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100518738
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	62,833,585 - 62,859,304 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	62,833,276 - 62,882,576 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,502,278 - 57,528,039 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF274
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	50,483,496 - 50,513,544 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	3,772,702 - 3,804,636 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf274
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	319,948 - 336,974 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	319,533 - 337,272 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp110
81 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	107
Count of miRNA genes:	90
Interacting mature miRNAs:	96
Transcripts:	ENSRNOT00000026298
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

Markers in Region

AW547636

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	1	66,558,234 - 66,558,338	NCBI	Rnor5.0
RGSC_v3.4	1	72,744,988 - 72,745,091	UniSTS	RGSC3.4
Cytogenetic Map	1	q21	UniSTS

BI295440

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,445,594 - 73,445,748 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	65,757,121 - 65,757,274	NCBI	Rnor6.0
Rnor_5.0	1	66,568,259 - 66,568,412	UniSTS	Rnor5.0
RGSC_v3.4	1	72,734,906 - 72,735,059	UniSTS	RGSC3.4
Celera	1	60,385,928 - 60,386,081	UniSTS
RH 3.4 Map	4	514.43	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH137568

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,460,782 - 73,460,936 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	65,741,941 - 65,742,094	NCBI	Rnor6.0
Rnor_5.0	1	66,553,079 - 66,553,232	UniSTS	Rnor5.0
RGSC_v3.4	1	72,750,094 - 72,750,247	UniSTS	RGSC3.4
Celera	1	60,370,745 - 60,370,898	UniSTS
RH 3.4 Map	1	766.0	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026298 ⟹ ENSRNOP00000026298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	73,445,336 - 73,461,086 (+)	Ensembl
Rnor_6.0 Ensembl	1	65,742,089 - 65,756,528 (-)	Ensembl

RefSeq Acc Id:

NM_001024775 ⟹ NP_001019946

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,518,053 - 82,533,294 (+)	NCBI
mRatBN7.2	1	73,445,867 - 73,461,108 (+)	NCBI
Rnor_6.0	1	65,741,769 - 65,757,002 (-)	NCBI
Rnor_5.0	1	66,552,907 - 66,568,729 (-)	NCBI
RGSC_v3.4	1	72,735,178 - 72,750,419 (+)	RGD
Celera	1	60,370,573 - 60,385,809 (-)	RGD

Sequence:

show sequence

CGACGGGCGAGCGCCATTGTGTCTTTCGCAGTCACTTGTAACGCTTCGTGAGAGTCCGTCGGAC
AGCACCCATCTTATGTTTTATTCGTAACTTCTGGAGCCTAGTGTCGGCTTTGTTAGTGACTCCA
CTTCTACGGACCCGGGAGAAGTTTCGTCAGCATTCTGCCTACTCGCGCGAGAGAACATTGAGGA
CAGTATGGCTTCCACGCTTCCAACAACCTGGCCCCATGAATCTGTGAAGTTTGAAGATGTATCA
CTGACATTTACCAAGGAAGAGTGGGCACAGCTGGACCTCCAACAGAAGTGCCTATACAGGGAAA
TCATGATGGAGAACTACAATAACATGATTTCAGTGGAGCATCACTTTTCCAAGCCAAATGTCAT
ATCTCAGTTAGAAGAAGCAGAAGACTGCTGGCCAATGGAGAGAGAAATTCGTCAAGATATTCTT
CCAGAATGTTCTGGGCCTTCTCTGGACCCTGGAATGAATTCCTTTCCTGCTGAGAGTCCCCTGA
TGAAGATCAAGGTTGTTGAGGTCCTTACATTGAACAAGGATGTGGCTGGTCCCCGGAATGCCCT
GATTCAATCCCTATATCCAGAAAGTAGGGAAAACTTGAACCCAGGTAACCTCAAACCAGCTAAG
CCAAGCAAGCGTTTGACTGACACTGAAGCTTTGCGCCAGAAGTTCCGACATTTCCAGTATGAAG
AATCAGCTGGTCCCCAGAAGGCTGTGTCCCGGCTTCGTAAGCTGTGTCACCAGTGGCTGCAGCC
CAATATACGTTCAAAGAAGCAGATCATAGAGTTGCTGGTGTTTGAACAGTTCCTGAGTGCACTG
CCTGAGAAGTTTCGGGTGTGGTTAGAGTCACAGCACCCAGAGGACTGCAGAGCAGCAGTAGCTT
TGTTGGAGAATATGACCTCAGTGACTAAGGATGATGCTCAGCTTGTCTGCTCTAGTGAAGCCAC
TGATCAACTAAAGGAGAAAAGAAAGGATGTGGCTACCTTACCAGTTACTGTACCACCTGAGGAG
CCGGTGACTTTCCAGGATGTGGCTGTGGGCTTCAGTCAGGAGGAGTGGCGGCTACTAGGTCCAG
TGCAGAGGACGGAGTATCATGATGTGATGCTAGAGACCTTGGGCAACTTGGTCTCTGTGGGGTG
GGAGCCTACGTTGGAAAACAGAGCGATAAGTCCAGACTCTCCCATTCCTGTGGTAAAACCAATT
CATGATCCAAACCCAAAAGATCTCTCAAGGAATGGTATCCAATCCACTGTCTTTGAAATTATCT
CACAAGATAGGGTCCAAGAAATACACACCATAGAATCAAATCAAGCGGGTCTTCTACAGGAAAA
AAGCCATCCTCAGAAGAAGCTCTCTGAAAGCTCCAAGTCTCAGGAGGGAACTAATCTTCACAAA
AGCCAGGGCTCACTTGATGAAGTTCCTCCTAGAAAGCATGTAAAAGTTAAGCAGAAGGGGACTA
GAAAGGGGAAAGACAGGAAGAACACCATTTCCATGACACGAGGTTTACGCATAAGAAATCAGCA
AAAGGACTCTGTGGAGTGGCAAGGCAGGGGTGACAGCAATCCCATGACACATGGCTACTCTATA
AAAAACCAACGGGGTTCTGAGCAAGGAACAGCTGGGGCCAGAAGAGATCCCATTACACTTACTG
TGTCTGCACAATTTTACCAGAAAGCCACTGGCTCTGAAGAGGGTAGATTCAGGGACAATAGCAA
TGCCATAGTACCTGATACACCTACAAAGATTCACCAGAAAAGCCCTGAATGGCATAAAGTGGGG
AGAAGTAACAATTCCATGTCATCTGTACAAAATGACCAGATGGGGTCTGGGGCAGGAAGAGGCA
GGGACAATACTATCTTGACACATGCACTACCTGTAAAAATTCACCAGAAAGGCTATGAAGAAGG
TAAAGTTCAAGGAAACAGGAATTCCTTGAGACATGTAAAAGCTCACCAGAAGGGCTCTAAAGGG
GAAAGAGTCAGGGAACTTAGCACTTCTGAAAAACATGTTCCCTATATAAAAAATCACCTAAAGA
CCTCTGAAAGAGAAAAAGGCAGGGAAAACAATGATTCCATAAAATACGGTCCCTATATAAAAAC
TTGCTATAGGGGTTCTGAAGTGAGAAAGCTCAGGAGAGCCAATAATTGTACGAAGGCCATCAGC
CGGCATGCTCAGCAGATATTCTTTATAAAAATTCACAAGGGGAGCCAAGTTTGCCGATGCAGTG
AATGTGGTAAAATGTTCCGAAATTCTAGGTATTTCTCTGTCCATAAGAAGATCCACACAGGAGA
ACGGCCTTACATGTGTATGGCCTGTGGGAAAGCCTTTGTTCAGAGCTCTTCCCTCACACAGCAT
CTTAGAATTCATAGTGGAGAGAGACCATTTGAGTGTTCAGAGTGTGGGAGGACTTTCAATGACC
GCTCAGCCATCTCTCAACACCTGAGGACTCACACTGGAGCTAAGCCCTACCACTGTCAGCACTG
TGGGAAAGCTTTCCGTCAGAGTTCCCACCTTACCAGGCATGAGAGGACTCATACTGGGGAGCGA
CCATATGTGTGCAGCAACTGTGGGAAGGCATTCACACAGAGCTCACACCTTATTGGGCATCAGA
AAACACACAGGATAAAATTCAAGAAGCAACCCAAATTGTAGCCTTTGTGCCTTTCAAAGCACTA
GTTTTTCAGCCTTGAGATGTACTATGCAGACACCGAGTGTGATAAATAGGCTTTGAATAAGGAA
AGCCCCACAGCTTAAGGGCAGCTCAGGACACCACCCAGCAGGCAGTGAGTGAAACCATCAGGGA
GTTTTTTAATTGCTTCACTTATCCTCAGAAGGAAATAAAAGATCTGAAAATACCCCTAAGTTTA
AGAAGCCAAGTACCAAAATTTGCACCAATATTTCTATACAGGGTAAAGTGTGTGAGTGACAAAA
ATTAAAAGTATGTAGAAAAATAAACTTATATTTATGTGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

XM_006228111 ⟹ XP_006228173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI
mRatBN7.2	1	73,445,303 - 73,461,112 (+)	NCBI
Rnor_6.0	1	65,741,769 - 65,757,708 (-)	NCBI
Rnor_5.0	1	66,552,907 - 66,568,729 (-)	NCBI

Sequence:

show sequence

GAAAACTGGAGAAGACATTTAGTGTAGCCTACCATATACTTAAAGTCCACTAGGTCTCCACAAT
TCCCACCCAAACTTTGGAAGACCACACAACCTTGCCCACTCTACAAATCTGGACGCAAACGCCT
GTCCTCTCATAGAAACTTTTATTCCAAGGCCTATTGACTTTCTGTTTCTACAGTTTAGTCCTTT
CTTCCTCTCCCTTTAAGAGCACCAGTGAAAATTCAGCACGATAGCATCCTTTTCTCCTTCCCCT
CAGGAAACTCGCCTCGGACCCACAGTCAACCACCATCCAGATCCCTCCCCTCTACACTAGGTAT
GCTGTACGTTCCGTCTGTCCCCTCGGTCAGCCCTCCTTATCTTGCTACGCGGCAAGCGTCCCCC
AGCAGACCTAACACCAGCACTTCCGCCCCACCTCCTTGCTCATCCCCTGTTTCCGGTTTGTCCA
AGTTCTTTTGCTCCTGTTTGAGGGTTCGACTCTTTCCCAGCCTGGGTCTCTATCCACACAAGGG
CAGGTGCTCAGCATCTTAGTATCCTCCTTCAAAGGCTTCATCCTAATTCTTTAGCAGCCAATAG
CACACTCCTACGGACTACGGCTTCGCCCACCAACAGAACGGACGCCGCCTGATTGCTGCCGCTA
AACCTCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGACCAGTGAGCTGACGCAGTTCGGGACAAG
ACCGACGGGCGAGCGCCATTGTGTCTTTCGCAGTCACTTGTAACGCTTCGTGAGAGTCCGTCGG
ACAGCACCCATCTTATGTTTTATTCGTAACTTCTGGAGCCTAGTGTCGGCTTCGTTAGTGACTC
CACTTCTACGGACCCGGGAGAAGGTCTGTAGTCCTGGGTCAGGATCCTGAGGAAGACATCGTGT
TCTAGATGAAGAACACAATTTAAGAAAACCAACCGCATTTTGGATTAGAGGACATCAGCTGTCC
CCTGTCGGTTAGAGGGGAACCTGTCTTGTAGGCTTATGGGAGTCGGGGAGAGGACTCACTTGTC
ACTTTGCCGTGTGGGGGTGGACTGGCCATGTCCTGCAGAGGGACGGGATATAGGCAGAGGTGGG
GTAGCCACTGGGCACATTTCTTAGTGCCCCCCCTTCCACCTTCAGTTTCGTCAGCATTCTGCCT
ACTCGCGCGAGAGAACATTGAGGACAGTATGGCTTCCACGCTTCCAACAACCTGGCCCCATGAA
TCTGTGAAGTTTGAAGATGTATCACTGACATTTACCAAGGAAGAGTGGGCACAGCTGGACCTCC
AACAGAAGTGCCTATACAGGGAAATCATGATGGAGAACTACAATAACATGATTTCAGTGGAGCA
TCACTTTTCCAAGCCAAATGTCATATCTCAGTTAGAAGAAGCAGAAGACTGCTGGCCAATGGAG
AGAGAAATTCGTCAAGATATTCTTCCAGAATGTTCTGGGCCTTCTCTGGACCCTGGAATGAATT
CCTTTCCTGCTGAGAGTCCCCTGATGAAGATCAAGGTTGTTGAGGTCCTTACATTGAACAAGGA
TGTGGCTGGTCCCCGGAATGCCCTGATTCAATCCCTATATCCAGAAAGTAGGGAAAACTTGAAC
CCAGGTAACCTCAAACCAGCTAAGCCAAGCAAGCGTTTGACTGACACTGAAGCTTTGCGCCAGA
AGTTCCGACATTTCCAGTATGAAGAATCAGCTGGTCCCCAGAAGGCTGTGTCCCGGCTTCGTAA
GCTGTGTCACCAGTGGCTGCAGCCCAATATACGTTCAAAGAAGCAGATCATAGAGTTGCTGGTG
TTTGAACAGTTCCTGAGTGCACTGCCTGAGAAGTTTCGGGTGTGGTTAGAGTCACAGCACCCAG
AGGACTGCAGAGCAGCAGTAGCTTTGTTGGAGAATATGACCTCAGTGACTAAGGATGATGCTCA
GCTTGTCTGCTCTAGTGAAGCCACTGATCAACTAAAGGAGAAAAGAAAGGATGTGGCTACCTTA
CCAGTTACTGTACCACCTGAGGAGCCGGTGACTTTCCAGGATGTGGCTGTGGGCTTCAGTCAGG
AGGAGTGGCGGCTACTAGGTCCAGTGCAGAGGACGGAGTATCATGATGTGATGCTAGAGACCTT
GGGCAACTTGGTCTCTGTGGGGTGGGAGCCTACGTTGGAAAACAGAGCGATAAGTCCAGACTCT
CCCATTCCTGTGGTAAAACCAATTCATGATCCAAACCCAAAAGATCTCTCAAGGAATGGTATCC
AATCCACTGTCTTTGAAATTATCTCACAAGATAGGGTCCAAGAAATACACACCATAGAATCAAA
TCAAGCGGGTCTTCTACAGGAAAAAAGCCATCCTCAGAAGAAGCTCTCTGAAAGCTCCAAGTCT
CAGGAGGGAACTAATCTTCACAAAAGCCAGGGCTCACTTGATGAAGTTCCTCCTAGAAAGCATG
TAAAAGTTAAGCAGAAGGGGACTAGAAAGGGGAAAGACAGGAAGAACACCATTTCCATGACACG
AGGTTTACGCATAAGAAATCAGCAAAAGGACTCTGTGGAGTGGCAAGGCAGGGGTGACAGCAAT
CCCATGACACATGGCTACTCTATAAAAAACCAACGGGGTTCTGAGCAAGGAACAGCTGGGGCCA
GAAGAGATCCCATTACACTTACTGTGTCTGCACAATTTTACCAGAAAGCCACTGGCTCTGAAGA
GGGTAGATTCAGGGACAATAGCAATGCCATAGTACCTGATACACCTACAAAGATTCACCAGAAA
AGCCCTGAATGGCATAAAGTGGGGAGAAGTAACAATTCCATGTCATCTGTACAAAATGACCAGA
TGGGGTCTGGGGCAGGAAGAGGCAGGGACAATACTATCTTGACACATGCACTACCTGTAAAAAT
TCACCAGAAAGGCTATGAAGAAGGTAAAGTTCAAGGAAACAGGAATTCCTTGAGACATGTAAAA
GCTCACCAGAAGGGCTCTAAAGGGGAAAGAGTCAGGGAACTTAGCACTTCTGAAAAACATGTTC
CCTATATAAAAAATCACCTAAAGACCTCTGAAAGAGAAAAAGGCAGGGAAAACAATGATTCCAT
AAAATACGGTCCCTATATAAAAACTTGCTATAGGGGTTCTGAAGTGAGAAAGCTCAGGAGAGCC
AATAATTGTACGAAGGCCATCAGCCGGCATGCTCAGCAGATATTCTTTATAAAAATTCACAAGG
GGAGCCAAGTTTGCCGATGCAGTGAATGTGGTAAAATGTTCCGAAATTCTAGGTATTTCTCTGT
CCATAAGAAGATCCACACAGGAGAACGGCCTTACATGTGTATGGCCTGTGGGAAAGCCTTTGTT
CAGAGCTCTTCCCTCACACAGCATCTTAGAATTCATAGTGGAGAGAGACCATTTGAGTGTTCAG
AGTGTGGGAGGACTTTCAATGACCGCTCAGCCATCTCTCAACACCTGAGGACTCACACTGGAGC
TAAGCCCTACCACTGTCAGCACTGTGGGAAAGCTTTCCGTCAGAGTTCCCACCTTACCAGGCAT
GAGAGGACTCATACTGGGGAGCGACCATATGTGTGCAGCAACTGTGGGAAGGCATTCACACAGA
GCTCACACCTTATTGGGCATCAGAAAACACACAGGATAAAATTCAAGAAGCAACCCAAATTGTA
GCCTTTGTGCCTTTCAAAGCACTAGTTTTTCAGCCTTGAGATGTACTATGCAGACACCGAGTGT
GATAAATAGGCTTTGAATAAGGAAAGCCCCACAGCTTAAGGGCAGCTCAGGACACCACCCAGCA
GGCAGTGAGTGAAACCATCAGGGAGTTTTTTAATTGCTTCACTTATCCTCAGAAGGAAATAAAA
GATCTGAAAATACCCCTAAGTTTAAGAAGCCAAGTACCAAAATTTGCACCAATATTTCTATACA
GGGTAAAGTGTGTGAGTGACAAAAATTAAAAGTATGTAGAAAAATAAACTTATATTTATGTGGA
A

hide sequence

RefSeq Acc Id:

XM_006228112 ⟹ XP_006228174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI
mRatBN7.2	1	73,445,303 - 73,461,112 (+)	NCBI
Rnor_6.0	1	65,741,769 - 65,757,708 (-)	NCBI
Rnor_5.0	1	66,552,907 - 66,568,729 (-)	NCBI

Sequence:

show sequence

GAAAACTGGAGAAGACATTTAGTGTAGCCTACCATATACTTAAAGTCCACTAGGTCTCCACAAT
TCCCACCCAAACTTTGGAAGACCACACAACCTTGCCCACTCTACAAATCTGGACGCAAACGCCT
GTCCTCTCATAGAAACTTTTATTCCAAGGCCTATTGACTTTCTGTTTCTACAGTTTAGTCCTTT
CTTCCTCTCCCTTTAAGAGCACCAGTGAAAATTCAGCACGATAGCATCCTTTTCTCCTTCCCCT
CAGGAAACTCGCCTCGGACCCACAGTCAACCACCATCCAGATCCCTCCCCTCTACACTAGGTAT
GCTGTACGTTCCGTCTGTCCCCTCGGTCAGCCCTCCTTATCTTGCTACGCGGCAAGCGTCCCCC
AGCAGACCTAACACCAGCACTTCCGCCCCACCTCCTTGCTCATCCCCTGTTTCCGGTTTGTCCA
AGTTCTTTTGCTCCTGTTTGAGGGTTCGACTCTTTCCCAGCCTGGGTCTCTATCCACACAAGGG
CAGGTGCTCAGCATCTTAGTATCCTCCTTCAAAGGCTTCATCCTAATTCTTTAGCAGCCAATAG
CACACTCCTACGGACTACGGCTTCGCCCACCAACAGAACGGACGCCGCCTGATTGCTGCCGCTA
AACCTCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGACCAGTGAGCTGACGCAGTTCGGGACAAG
ACCGACGGGCGAGCGCCATTGTGTCTTTCGCAGTCACTTGTAACGCTTCGTGAGAGTCCGTCGG
ACAGCACCCATCTTATGTTTTATTCGTAACTTCTGGAGCCTAGTGTCGGCTTCGTTAGTGACTC
CACTTCTACGGACCCGGGAGAAGGTCTGTAGTCCTGGGTCAGGATCCTGAGGAAGACATCGTGT
TCTAGATGAAGAACACAATTTAAGAAAACCAACCGCATTTTGGATTAGAGGACATCAGCTGTCC
CCTGTCGTTTCGTCAGCATTCTGCCTACTCGCGCGAGAGAACATTGAGGACAGTATGGCTTCCA
CGCTTCCAACAACCTGGCCCCATGAATCTGTGAAGTTTGAAGATGTATCACTGACATTTACCAA
GGAAGAGTGGGCACAGCTGGACCTCCAACAGAAGTGCCTATACAGGGAAATCATGATGGAGAAC
TACAATAACATGATTTCAGTGGAGCATCACTTTTCCAAGCCAAATGTCATATCTCAGTTAGAAG
AAGCAGAAGACTGCTGGCCAATGGAGAGAGAAATTCGTCAAGATATTCTTCCAGAATGTTCTGG
GCCTTCTCTGGACCCTGGAATGAATTCCTTTCCTGCTGAGAGTCCCCTGATGAAGATCAAGGTT
GTTGAGGTCCTTACATTGAACAAGGATGTGGCTGGTCCCCGGAATGCCCTGATTCAATCCCTAT
ATCCAGAAAGTAGGGAAAACTTGAACCCAGGTAACCTCAAACCAGCTAAGCCAAGCAAGCGTTT
GACTGACACTGAAGCTTTGCGCCAGAAGTTCCGACATTTCCAGTATGAAGAATCAGCTGGTCCC
CAGAAGGCTGTGTCCCGGCTTCGTAAGCTGTGTCACCAGTGGCTGCAGCCCAATATACGTTCAA
AGAAGCAGATCATAGAGTTGCTGGTGTTTGAACAGTTCCTGAGTGCACTGCCTGAGAAGTTTCG
GGTGTGGTTAGAGTCACAGCACCCAGAGGACTGCAGAGCAGCAGTAGCTTTGTTGGAGAATATG
ACCTCAGTGACTAAGGATGATGCTCAGCTTGTCTGCTCTAGTGAAGCCACTGATCAACTAAAGG
AGAAAAGAAAGGATGTGGCTACCTTACCAGTTACTGTACCACCTGAGGAGCCGGTGACTTTCCA
GGATGTGGCTGTGGGCTTCAGTCAGGAGGAGTGGCGGCTACTAGGTCCAGTGCAGAGGACGGAG
TATCATGATGTGATGCTAGAGACCTTGGGCAACTTGGTCTCTGTGGGGTGGGAGCCTACGTTGG
AAAACAGAGCGATAAGTCCAGACTCTCCCATTCCTGTGGTAAAACCAATTCATGATCCAAACCC
AAAAGATCTCTCAAGGAATGGTATCCAATCCACTGTCTTTGAAATTATCTCACAAGATAGGGTC
CAAGAAATACACACCATAGAATCAAATCAAGCGGGTCTTCTACAGGAAAAAAGCCATCCTCAGA
AGAAGCTCTCTGAAAGCTCCAAGTCTCAGGAGGGAACTAATCTTCACAAAAGCCAGGGCTCACT
TGATGAAGTTCCTCCTAGAAAGCATGTAAAAGTTAAGCAGAAGGGGACTAGAAAGGGGAAAGAC
AGGAAGAACACCATTTCCATGACACGAGGTTTACGCATAAGAAATCAGCAAAAGGACTCTGTGG
AGTGGCAAGGCAGGGGTGACAGCAATCCCATGACACATGGCTACTCTATAAAAAACCAACGGGG
TTCTGAGCAAGGAACAGCTGGGGCCAGAAGAGATCCCATTACACTTACTGTGTCTGCACAATTT
TACCAGAAAGCCACTGGCTCTGAAGAGGGTAGATTCAGGGACAATAGCAATGCCATAGTACCTG
ATACACCTACAAAGATTCACCAGAAAAGCCCTGAATGGCATAAAGTGGGGAGAAGTAACAATTC
CATGTCATCTGTACAAAATGACCAGATGGGGTCTGGGGCAGGAAGAGGCAGGGACAATACTATC
TTGACACATGCACTACCTGTAAAAATTCACCAGAAAGGCTATGAAGAAGGTAAAGTTCAAGGAA
ACAGGAATTCCTTGAGACATGTAAAAGCTCACCAGAAGGGCTCTAAAGGGGAAAGAGTCAGGGA
ACTTAGCACTTCTGAAAAACATGTTCCCTATATAAAAAATCACCTAAAGACCTCTGAAAGAGAA
AAAGGCAGGGAAAACAATGATTCCATAAAATACGGTCCCTATATAAAAACTTGCTATAGGGGTT
CTGAAGTGAGAAAGCTCAGGAGAGCCAATAATTGTACGAAGGCCATCAGCCGGCATGCTCAGCA
GATATTCTTTATAAAAATTCACAAGGGGAGCCAAGTTTGCCGATGCAGTGAATGTGGTAAAATG
TTCCGAAATTCTAGGTATTTCTCTGTCCATAAGAAGATCCACACAGGAGAACGGCCTTACATGT
GTATGGCCTGTGGGAAAGCCTTTGTTCAGAGCTCTTCCCTCACACAGCATCTTAGAATTCATAG
TGGAGAGAGACCATTTGAGTGTTCAGAGTGTGGGAGGACTTTCAATGACCGCTCAGCCATCTCT
CAACACCTGAGGACTCACACTGGAGCTAAGCCCTACCACTGTCAGCACTGTGGGAAAGCTTTCC
GTCAGAGTTCCCACCTTACCAGGCATGAGAGGACTCATACTGGGGAGCGACCATATGTGTGCAG
CAACTGTGGGAAGGCATTCACACAGAGCTCACACCTTATTGGGCATCAGAAAACACACAGGATA
AAATTCAAGAAGCAACCCAAATTGTAGCCTTTGTGCCTTTCAAAGCACTAGTTTTTCAGCCTTG
AGATGTACTATGCAGACACCGAGTGTGATAAATAGGCTTTGAATAAGGAAAGCCCCACAGCTTA
AGGGCAGCTCAGGACACCACCCAGCAGGCAGTGAGTGAAACCATCAGGGAGTTTTTTAATTGCT
TCACTTATCCTCAGAAGGAAATAAAAGATCTGAAAATACCCCTAAGTTTAAGAAGCCAAGTACC
AAAATTTGCACCAATATTTCTATACAGGGTAAAGTGTGTGAGTGACAAAAATTAAAAGTATGTA
GAAAAATAAACTTATATTTATGTGGAA

hide sequence

RefSeq Acc Id:

XM_017589113 ⟹ XP_017444602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI
mRatBN7.2	1	73,445,303 - 73,461,112 (+)	NCBI
Rnor_6.0	1	65,741,769 - 65,757,709 (-)	NCBI

Sequence:

show sequence

GGAAAACTGGAGAAGACATTTAGTGTAGCCTACCATATACTTAAAGTCCACTAGGTCTCCACAA
TTCCCACCCAAACTTTGGAAGACCACACAACCTTGCCCACTCTACAAATCTGGACGCAAACGCC
TGTCCTCTCATAGAAACTTTTATTCCAAGGCCTATTGACTTTCTGTTTCTACAGTTTAGTCCTT
TCTTCCTCTCCCTTTAAGAGCACCAGTGAAAATTCAGCACGATAGCATCCTTTTCTCCTTCCCC
TCAGGAAACTCGCCTCGGACCCACAGTCAACCACCATCCAGATCCCTCCCCTCTACACTAGGTA
TGCTGTACGTTCCGTCTGTCCCCTCGGTCAGCCCTCCTTATCTTGCTACGCGGCAAGCGTCCCC
CAGCAGACCTAACACCAGCACTTCCGCCCCACCTCCTTGCTCATCCCCTGTTTCCGGTTTGTCC
AAGTTCTTTTGCTCCTGTTTGAGGGTTCGACTCTTTCCCAGCCTGGGTCTCTATCCACACAAGG
GCAGGTGCTCAGCATCTTAGTATCCTCCTTCAAAGGCTTCATCCTAATTCTTTAGCAGCCAATA
GCACACTCCTACGGACTACGGCTTCGCCCACCAACAGAACGGACGCCGCCTGATTGCTGCCGCT
AAACCTCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGACCAGTGAGCTGACGCAGTTCGGGACAA
GACCGACGGGCGAGCGCCATTGTGTCTTTCGCAGTCACTTGTAACGCTTCGTGAGAGTCCGTCG
GACAGCACCCATCTTATGTTTTATTCGTAACTTCTGGAGCCTAGTGTCGGCTTCGTTAGTGACT
CCACTTCTACGGACCCGGGAGAAGGTCTGTAGTCCTGGGTCAGGATCCTGAGGAAGACATCGTG
TTCTAGATGAAGAACACAATTTAAGAAAACCAACCGCATTTTGGATTAGAGGACATCAGCTGTC
CCCTGTCGGTTAGAGGGGAACCTGTCTTGTAGGCTTATGGGAGTCGGGGAGAGGACTCACTTGT
CACTTTGCCGTGTGGGGGTGGACTGGCCATGTCCTGCAGAGGGACGGGATATAGGCAGAGGTGG
GGTAGCCACTGGGCACATTTCTTAGTGCCCCCCCTTCCACCTTCAGTTTCGTCAGCATTCTGCC
TACTCGCGCGAGAGAACATTGAGGACAGTATGGCTTCCACGCTTCCAACAACCTGGCCCCATGA
ATCTGTGAAGTTTGAAGATGTATCACTGACATTTACCAAGGAAGAGTGGGCACAGCTGGACCTC
CAACAGAAGTGCCTATACAGGGAAATCATGATGGAGAACTACAATAACATGATTTCAGTGGAGC
ATCACTTTTCCAAGCCAAATGTCATATCTCAGTTAGAAGAAGCAGAAGACTGCTGGCCAATGGA
GAGAGAAATTCGTCAAGATATTCTTCCAGCTCAGCTTGTCTGCTCTAGTGAAGCCACTGATCAA
CTAAAGGAGAAAAGAAAGGATGTGGCTACCTTACCAGTTACTGTACCACCTGAGGAGCCGGTGA
CTTTCCAGGATGTGGCTGTGGGCTTCAGTCAGGAGGAGTGGCGGCTACTAGGTCCAGTGCAGAG
GACGGAGTATCATGATGTGATGCTAGAGACCTTGGGCAACTTGGTCTCTGTGGGGTGGGAGCCT
ACGTTGGAAAACAGAGCGATAAGTCCAGACTCTCCCATTCCTGTGGTAAAACCAATTCATGATC
CAAACCCAAAAGATCTCTCAAGGAATGGTATCCAATCCACTGTCTTTGAAATTATCTCACAAGA
TAGGGTCCAAGAAATACACACCATAGAATCAAATCAAGCGGGTCTTCTACAGGAAAAAAGCCAT
CCTCAGAAGAAGCTCTCTGAAAGCTCCAAGTCTCAGGAGGGAACTAATCTTCACAAAAGCCAGG
GCTCACTTGATGAAGTTCCTCCTAGAAAGCATGTAAAAGTTAAGCAGAAGGGGACTAGAAAGGG
GAAAGACAGGAAGAACACCATTTCCATGACACGAGGTTTACGCATAAGAAATCAGCAAAAGGAC
TCTGTGGAGTGGCAAGGCAGGGGTGACAGCAATCCCATGACACATGGCTACTCTATAAAAAACC
AACGGGGTTCTGAGCAAGGAACAGCTGGGGCCAGAAGAGATCCCATTACACTTACTGTGTCTGC
ACAATTTTACCAGAAAGCCACTGGCTCTGAAGAGGGTAGATTCAGGGACAATAGCAATGCCATA
GTACCTGATACACCTACAAAGATTCACCAGAAAAGCCCTGAATGGCATAAAGTGGGGAGAAGTA
ACAATTCCATGTCATCTGTACAAAATGACCAGATGGGGTCTGGGGCAGGAAGAGGCAGGGACAA
TACTATCTTGACACATGCACTACCTGTAAAAATTCACCAGAAAGGCTATGAAGAAGGTAAAGTT
CAAGGAAACAGGAATTCCTTGAGACATGTAAAAGCTCACCAGAAGGGCTCTAAAGGGGAAAGAG
TCAGGGAACTTAGCACTTCTGAAAAACATGTTCCCTATATAAAAAATCACCTAAAGACCTCTGA
AAGAGAAAAAGGCAGGGAAAACAATGATTCCATAAAATACGGTCCCTATATAAAAACTTGCTAT
AGGGGTTCTGAAGTGAGAAAGCTCAGGAGAGCCAATAATTGTACGAAGGCCATCAGCCGGCATG
CTCAGCAGATATTCTTTATAAAAATTCACAAGGGGAGCCAAGTTTGCCGATGCAGTGAATGTGG
TAAAATGTTCCGAAATTCTAGGTATTTCTCTGTCCATAAGAAGATCCACACAGGAGAACGGCCT
TACATGTGTATGGCCTGTGGGAAAGCCTTTGTTCAGAGCTCTTCCCTCACACAGCATCTTAGAA
TTCATAGTGGAGAGAGACCATTTGAGTGTTCAGAGTGTGGGAGGACTTTCAATGACCGCTCAGC
CATCTCTCAACACCTGAGGACTCACACTGGAGCTAAGCCCTACCACTGTCAGCACTGTGGGAAA
GCTTTCCGTCAGAGTTCCCACCTTACCAGGCATGAGAGGACTCATACTGGGGAGCGACCATATG
TGTGCAGCAACTGTGGGAAGGCATTCACACAGAGCTCACACCTTATTGGGCATCAGAAAACACA
CAGGATAAAATTCAAGAAGCAACCCAAATTGTAGCCTTTGTGCCTTTCAAAGCACTAGTTTTTC
AGCCTTGAGATGTACTATGCAGACACCGAGTGTGATAAATAGGCTTTGAATAAGGAAAGCCCCA
CAGCTTAAGGGCAGCTCAGGACACCACCCAGCAGGCAGTGAGTGAAACCATCAGGGAGTTTTTT
AATTGCTTCACTTATCCTCAGAAGGAAATAAAAGATCTGAAAATACCCCTAAGTTTAAGAAGCC
AAGTACCAAAATTTGCACCAATATTTCTATACAGGGTAAAGTGTGTGAGTGACAAAAATTAAAA
GTATGTAGAAAAATAAACTTATATTTATGTGGAA

hide sequence

RefSeq Acc Id:

XM_063261277 ⟹ XP_063117347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI

RefSeq Acc Id:

XM_063261278 ⟹ XP_063117348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,509,563 - 82,533,294 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019946	(Get FASTA)	NCBI Sequence Viewer
	XP_006228173	(Get FASTA)	NCBI Sequence Viewer
	XP_006228174	(Get FASTA)	NCBI Sequence Viewer
	XP_017444602	(Get FASTA)	NCBI Sequence Viewer
	XP_063117347	(Get FASTA)	NCBI Sequence Viewer
	XP_063117348	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97420	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026298.6
GenBank Protein	Q4V8E9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001019946 ⟸ NM_001024775

- UniProtKB:

Q4V8E9 (UniProtKB/Swiss-Prot), A0A8L2UK63 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASTLPTTWPHESVKFEDVSLTFTKEEWAQLDLQQKCLYREIMMENYNNMISVEHHFSKPNVIS
QLEEAEDCWPMEREIRQDILPECSGPSLDPGMNSFPAESPLMKIKVVEVLTLNKDVAGPRNALI
QSLYPESRENLNPGNLKPAKPSKRLTDTEALRQKFRHFQYEESAGPQKAVSRLRKLCHQWLQPN
IRSKKQIIELLVFEQFLSALPEKFRVWLESQHPEDCRAAVALLENMTSVTKDDAQLVCSSEATD
QLKEKRKDVATLPVTVPPEEPVTFQDVAVGFSQEEWRLLGPVQRTEYHDVMLETLGNLVSVGWE
PTLENRAISPDSPIPVVKPIHDPNPKDLSRNGIQSTVFEIISQDRVQEIHTIESNQAGLLQEKS
HPQKKLSESSKSQEGTNLHKSQGSLDEVPPRKHVKVKQKGTRKGKDRKNTISMTRGLRIRNQQK
DSVEWQGRGDSNPMTHGYSIKNQRGSEQGTAGARRDPITLTVSAQFYQKATGSEEGRFRDNSNA
IVPDTPTKIHQKSPEWHKVGRSNNSMSSVQNDQMGSGAGRGRDNTILTHALPVKIHQKGYEEGK
VQGNRNSLRHVKAHQKGSKGERVRELSTSEKHVPYIKNHLKTSEREKGRENNDSIKYGPYIKTC
YRGSEVRKLRRANNCTKAISRHAQQIFFIKIHKGSQVCRCSECGKMFRNSRYFSVHKKIHTGER
PYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCQHCG
KAFRQSSHLTRHERTHTGERPYVCSNCGKAFTQSSHLIGHQKTHRIKFKKQPKL

hide sequence

RefSeq Acc Id:	XP_006228173 ⟸ XM_006228111
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2UK63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCRGTGYRQRWGSHWAHFLVPPLPPSVSSAFCLLARENIEDSMASTLPTTWPHESVKFEDVSL TFTKEEWAQLDLQQKCLYREIMMENYNNMISVEHHFSKPNVISQLEEAEDCWPMEREIRQDILP ECSGPSLDPGMNSFPAESPLMKIKVVEVLTLNKDVAGPRNALIQSLYPESRENLNPGNLKPAKP SKRLTDTEALRQKFRHFQYEESAGPQKAVSRLRKLCHQWLQPNIRSKKQIIELLVFEQFLSALP EKFRVWLESQHPEDCRAAVALLENMTSVTKDDAQLVCSSEATDQLKEKRKDVATLPVTVPPEEP VTFQDVAVGFSQEEWRLLGPVQRTEYHDVMLETLGNLVSVGWEPTLENRAISPDSPIPVVKPIH DPNPKDLSRNGIQSTVFEIISQDRVQEIHTIESNQAGLLQEKSHPQKKLSESSKSQEGTNLHKS QGSLDEVPPRKHVKVKQKGTRKGKDRKNTISMTRGLRIRNQQKDSVEWQGRGDSNPMTHGYSIK NQRGSEQGTAGARRDPITLTVSAQFYQKATGSEEGRFRDNSNAIVPDTPTKIHQKSPEWHKVGR SNNSMSSVQNDQMGSGAGRGRDNTILTHALPVKIHQKGYEEGKVQGNRNSLRHVKAHQKGSKGE RVRELSTSEKHVPYIKNHLKTSEREKGRENNDSIKYGPYIKTCYRGSEVRKLRRANNCTKAISR HAQQIFFIKIHKGSQVCRCSECGKMFRNSRYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHL RIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCQHCGKAFRQSSHLTRHERTHTGERP YVCSNCGKAFTQSSHLIGHQKTHRIKFKKQPKL hide sequence

RefSeq Acc Id:	XP_006228174 ⟸ XM_006228112
- Peptide Label:	isoform X2
- UniProtKB:	Q4V8E9 (UniProtKB/Swiss-Prot), A0A8L2UK63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASTLPTTWPHESVKFEDVSLTFTKEEWAQLDLQQKCLYREIMMENYNNMISVEHHFSKPNVIS QLEEAEDCWPMEREIRQDILPECSGPSLDPGMNSFPAESPLMKIKVVEVLTLNKDVAGPRNALI QSLYPESRENLNPGNLKPAKPSKRLTDTEALRQKFRHFQYEESAGPQKAVSRLRKLCHQWLQPN IRSKKQIIELLVFEQFLSALPEKFRVWLESQHPEDCRAAVALLENMTSVTKDDAQLVCSSEATD QLKEKRKDVATLPVTVPPEEPVTFQDVAVGFSQEEWRLLGPVQRTEYHDVMLETLGNLVSVGWE PTLENRAISPDSPIPVVKPIHDPNPKDLSRNGIQSTVFEIISQDRVQEIHTIESNQAGLLQEKS HPQKKLSESSKSQEGTNLHKSQGSLDEVPPRKHVKVKQKGTRKGKDRKNTISMTRGLRIRNQQK DSVEWQGRGDSNPMTHGYSIKNQRGSEQGTAGARRDPITLTVSAQFYQKATGSEEGRFRDNSNA IVPDTPTKIHQKSPEWHKVGRSNNSMSSVQNDQMGSGAGRGRDNTILTHALPVKIHQKGYEEGK VQGNRNSLRHVKAHQKGSKGERVRELSTSEKHVPYIKNHLKTSEREKGRENNDSIKYGPYIKTC YRGSEVRKLRRANNCTKAISRHAQQIFFIKIHKGSQVCRCSECGKMFRNSRYFSVHKKIHTGER PYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCQHCG KAFRQSSHLTRHERTHTGERPYVCSNCGKAFTQSSHLIGHQKTHRIKFKKQPKL hide sequence

RefSeq Acc Id:

XP_017444602 ⟸ XM_017589113

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSCRGTGYRQRWGSHWAHFLVPPLPPSVSSAFCLLARENIEDSMASTLPTTWPHESVKFEDVSL
TFTKEEWAQLDLQQKCLYREIMMENYNNMISVEHHFSKPNVISQLEEAEDCWPMEREIRQDILP
AQLVCSSEATDQLKEKRKDVATLPVTVPPEEPVTFQDVAVGFSQEEWRLLGPVQRTEYHDVMLE
TLGNLVSVGWEPTLENRAISPDSPIPVVKPIHDPNPKDLSRNGIQSTVFEIISQDRVQEIHTIE
SNQAGLLQEKSHPQKKLSESSKSQEGTNLHKSQGSLDEVPPRKHVKVKQKGTRKGKDRKNTISM
TRGLRIRNQQKDSVEWQGRGDSNPMTHGYSIKNQRGSEQGTAGARRDPITLTVSAQFYQKATGS
EEGRFRDNSNAIVPDTPTKIHQKSPEWHKVGRSNNSMSSVQNDQMGSGAGRGRDNTILTHALPV
KIHQKGYEEGKVQGNRNSLRHVKAHQKGSKGERVRELSTSEKHVPYIKNHLKTSEREKGRENND
SIKYGPYIKTCYRGSEVRKLRRANNCTKAISRHAQQIFFIKIHKGSQVCRCSECGKMFRNSRYF
SVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHT
GAKPYHCQHCGKAFRQSSHLTRHERTHTGERPYVCSNCGKAFTQSSHLIGHQKTHRIKFKKQPK
L

hide sequence

Ensembl Acc Id:

ENSRNOP00000026298 ⟸ ENSRNOT00000026298

RefSeq Acc Id:	XP_063117348 ⟸ XM_063261278
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117347 ⟸ XM_063261277
- Peptide Label:	isoform X4

Protein Domains

C2H2-type KRAB SCAN box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8E9-F1-model_v2	AlphaFold	Q4V8E9	1-822	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306339	AgrOrtholog
BioCyc Gene	G2FUF-60718	BioCyc
Ensembl Genes	ENSRNOG00000031328	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026298.6	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7454819	IMAGE-MGC_LOAD
InterPro	KRAB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Krueppel_C2H2_ZnF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:308362	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114466	IMAGE-MGC_LOAD
NCBI Gene	308362	ENTREZGENE
PANTHER	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KRAB DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	KRAB DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCAN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zfp110	PhenoGen
PROSITE	KRAB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031328	RatGTEx
SMART	KRAB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCAN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF109640	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2UK63	ENTREZGENE, UniProtKB/TrEMBL
	NRIF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Zfp110	zinc finger protein 110	Zfp110_predicted	zinc finger protein 110 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp110_predicted	zinc finger protein 110 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)