ZNF274 (zinc finger protein 274) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ZNF274 (zinc finger protein 274) Chlorocebus sabaeus
Analyze
Symbol: ZNF274
Name: zinc finger protein 274
RGD ID: 18565408
Description: ENCODES a protein that exhibits chromatin binding (ortholog); neurotrophin p75 receptor binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); extrinsic apoptotic signaling pathway (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Nerve Degeneration (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurotrophin receptor-interacting factor homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,483,496 - 50,513,544 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,772,702 - 3,804,636 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF274
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,483,496 - 50,513,544 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,772,702 - 3,804,636 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF274
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,183,061 - 58,213,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,183,029 - 58,213,562 (+)EnsemblGRCh38hg38GRCh38
GRCh371958,694,428 - 58,724,928 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,386,208 - 63,416,739 (+)NCBINCBI36Build 36hg18NCBI36
Build 341963,386,207 - 63,416,739NCBI
Celera1955,738,321 - 55,768,855 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,004,651 - 55,035,056 (+)NCBIHuRef
CHM1_11958,688,612 - 58,719,124 (+)NCBICHM1_1
T2T-CHM13v2.01961,276,790 - 61,310,024 (+)NCBIT2T-CHM13v2.0
Zfp110
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,565,225 - 12,584,513 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,568,688 - 12,584,504 (+)EnsemblGRCm39 Ensembl
GRCm38712,834,761 - 12,850,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,834,761 - 12,850,577 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,420,159 - 13,435,933 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,735,240 - 11,750,756 (+)NCBIMGSCv36mm8
Celera710,459,128 - 10,474,934 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.66NCBI
Zfp110
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,509,563 - 82,533,294 (+)NCBIGRCr8
mRatBN7.2173,445,303 - 73,461,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,445,336 - 73,461,086 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,833,035 - 78,848,255 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,397,388 - 87,412,608 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0180,588,102 - 80,603,322 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0165,741,769 - 65,757,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,742,089 - 65,756,528 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,552,907 - 66,568,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,735,178 - 72,750,419 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,813,288 - 72,828,528 (+)NCBI
Celera160,370,573 - 60,385,809 (-)NCBICelera
Cytogenetic Map1q21NCBI
Znf274
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955584922,807 - 943,352 (+)NCBIChiLan1.0ChiLan1.0
ZNF274
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,430,850 - 64,489,570 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,218,857 - 66,277,621 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,163,153 - 55,221,933 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11963,989,785 - 64,048,097 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,017,183 - 64,048,097 (+)Ensemblpanpan1.1panPan2
ZNF274
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,696,295 - 99,719,559 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,697,185 - 99,719,455 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,091,683 - 100,114,373 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,337,632 - 100,360,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,337,632 - 100,359,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,982,841 - 100,005,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,695,065 - 99,717,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,450,336 - 100,473,026 (-)NCBIUU_Cfam_GSD_1.0
Znf274
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934933,751 - 46,294 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936897657,094 - 672,964 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100518738
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl662,833,585 - 62,859,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1662,833,276 - 62,882,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,502,278 - 57,528,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf274
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624832319,948 - 336,974 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624832319,533 - 337,272 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_007998413   ⟹   XP_007996604
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,483,496 - 50,513,544 (+)NCBI
Vero_WHO_p1.0NW_0236660453,772,767 - 3,804,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998414   ⟹   XP_007996605
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,483,955 - 50,513,544 (+)NCBI
Vero_WHO_p1.0NW_0236660453,773,175 - 3,804,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998415   ⟹   XP_007996606
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,484,109 - 50,513,544 (+)NCBI
Vero_WHO_p1.0NW_0236660453,773,160 - 3,804,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998416   ⟹   XP_007996607
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,484,108 - 50,513,544 (+)NCBI
Vero_WHO_p1.0NW_0236660453,773,460 - 3,804,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998417   ⟹   XP_007996608
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,483,496 - 50,513,544 (+)NCBI
Vero_WHO_p1.0NW_0236660453,772,702 - 3,804,636 (+)NCBI
Sequence:
RefSeq Acc Id: XP_007996604   ⟸   XM_007998413
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007996608   ⟸   XM_007998417
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007996605   ⟸   XM_007998414
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007996607   ⟸   XM_007998416
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007996606   ⟸   XM_007998415
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene ZNF274 ENTREZGENE