Rsph14 (radial spoke head 14 homolog) - Rat Genome Database

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Gene: Rsph14 (radial spoke head 14 homolog) Rattus norvegicus
Analyze
Symbol: Rsph14
Name: radial spoke head 14 homolog
RGD ID: 1305601
Description: Predicted to be part of radial spoke. Orthologous to human RSPH14 (radial spoke head 14 homolog); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC365552; rhabdoid tumor deletion region gene 1; rhabdoid tumor deletion region protein 1; Rtdr1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,626,707 - 13,702,817 (+)NCBIGRCr8
mRatBN7.22013,627,495 - 13,703,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,629,000 - 13,703,449 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2014,334,036 - 14,409,926 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,694,867 - 13,770,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02014,167,462 - 14,243,358 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02014,576,983 - 14,653,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2014,577,166 - 14,653,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02016,759,168 - 16,835,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,132,366 - 14,141,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12014,132,592 - 14,140,747 (+)NCBI
Celera2015,112,140 - 15,121,330 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
radial spoke  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Rsph14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,626,707 - 13,702,817 (+)NCBIGRCr8
mRatBN7.22013,627,495 - 13,703,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,629,000 - 13,703,449 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2014,334,036 - 14,409,926 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,694,867 - 13,770,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02014,167,462 - 14,243,358 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02014,576,983 - 14,653,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2014,577,166 - 14,653,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02016,759,168 - 16,835,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,132,366 - 14,141,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12014,132,592 - 14,140,747 (+)NCBI
Celera2015,112,140 - 15,121,330 (+)NCBICelera
Cytogenetic Map20p12NCBI
RSPH14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,059,415 - 23,180,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,059,415 - 23,145,021 (-)EnsemblGRCh38hg38GRCh38
GRCh372223,401,593 - 23,484,177 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362221,731,593 - 21,814,241 (-)NCBINCBI36Build 36hg18NCBI36
Build 342221,726,147 - 21,808,795NCBI
Celera227,216,163 - 7,298,792 (-)NCBICelera
Cytogenetic Map22q11.22-q11.23NCBI
HuRef226,369,600 - 6,451,979 (-)NCBIHuRef
CHM1_12223,413,885 - 23,496,542 (-)NCBICHM1_1
T2T-CHM13v2.02223,482,278 - 23,603,314 (-)NCBIT2T-CHM13v2.0
Rsph14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391074,793,309 - 74,868,475 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1074,793,309 - 74,868,418 (-)EnsemblGRCm39 Ensembl
GRCm381074,957,477 - 75,032,642 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1074,957,477 - 75,032,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371074,420,222 - 74,495,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1076,005,258 - 76,080,363 (-)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1038.48NCBI
Rsph14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554557,488,504 - 7,572,047 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554557,491,693 - 7,574,257 (-)NCBIChiLan1.0ChiLan1.0
RSPH14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22332,891,166 - 32,976,293 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12235,106,255 - 35,191,425 (+)NCBINHGRI_mPanPan1
PanPan1.12221,683,434 - 21,764,965 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2221,683,434 - 21,764,965 (-)Ensemblpanpan1.1panPan2
RSPH14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12627,749,071 - 27,827,433 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2627,749,077 - 27,827,050 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2626,824,965 - 26,903,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02629,152,954 - 29,231,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2629,152,987 - 29,229,269 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12627,236,275 - 27,314,375 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02626,853,968 - 26,932,030 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02627,842,980 - 27,921,136 (-)NCBIUU_Cfam_GSD_1.0
Rsph14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118142,494,804 - 142,572,315 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936619181,747 - 257,866 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,123,935 - 49,184,735 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,123,934 - 49,186,157 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21452,599,871 - 52,607,902 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103222901
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1192,740,897 - 2,824,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl192,741,212 - 2,824,031 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660854,376,557 - 4,386,026 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rsph14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247479,416,373 - 9,502,716 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247479,416,411 - 9,504,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rsph14
270 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:102
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000041165
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 33 109 50 49 18 25 18 6 139 80 89 24 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000041165   ⟹   ENSRNOP00000043047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,629,000 - 13,635,954 (+)Ensembl
Rnor_6.0 Ensembl2014,578,605 - 14,587,794 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085583   ⟹   ENSRNOP00000071598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,629,000 - 13,703,449 (+)Ensembl
Rnor_6.0 Ensembl2014,577,166 - 14,653,038 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109448   ⟹   ENSRNOP00000076815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,629,000 - 13,703,449 (+)Ensembl
RefSeq Acc Id: NM_001127557   ⟹   NP_001121029
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,628,383 - 13,637,573 (+)NCBI
mRatBN7.22013,629,002 - 13,638,193 (+)NCBI
Rnor_6.02014,578,607 - 14,587,797 (+)NCBI
Rnor_5.02016,759,168 - 16,835,283 (+)NCBI
RGSC_v3.42014,132,366 - 14,141,556 (+)RGD
Celera2015,112,140 - 15,121,330 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401509   ⟹   NP_001388438
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,626,924 - 13,702,817 (+)NCBI
mRatBN7.22013,627,543 - 13,703,445 (+)NCBI
RefSeq Acc Id: XM_006256340   ⟹   XP_006256402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,626,723 - 13,702,817 (+)NCBI
mRatBN7.22013,627,495 - 13,703,447 (+)NCBI
Rnor_6.02014,576,983 - 14,653,236 (+)NCBI
Rnor_5.02016,759,168 - 16,835,283 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063279329   ⟹   XP_063135399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,626,707 - 13,702,817 (+)NCBI
RefSeq Acc Id: NP_001121029   ⟸   NM_001127557
- Peptide Label: isoform 1
- UniProtKB: B1WC99 (UniProtKB/TrEMBL),   F1LNB6 (UniProtKB/TrEMBL),   A0A8J8YHA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256402   ⟸   XM_006256340
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0V7 (UniProtKB/TrEMBL),   A6JKM1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000043047   ⟸   ENSRNOT00000041165
Ensembl Acc Id: ENSRNOP00000071598   ⟸   ENSRNOT00000085583
Ensembl Acc Id: ENSRNOP00000076815   ⟸   ENSRNOT00000109448
RefSeq Acc Id: NP_001388438   ⟸   NM_001401509
- Peptide Label: isoform 2
- UniProtKB: A0A0G2K0V7 (UniProtKB/TrEMBL),   A6JKM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135399   ⟸   XM_063279329
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0V7-F1-model_v2 AlphaFold A0A0G2K0V7 1-341 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701549
Promoter ID:EPDNEW_R12070
Type:initiation region
Name:Rsph14_1
Description:radial spoke head 14 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02014,577,182 - 14,577,242EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305601 AgrOrtholog
BioCyc Gene G2FUF-4101 BioCyc
Ensembl Genes ENSRNOG00000001315 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041165.4 UniProtKB/TrEMBL
  ENSRNOT00000085583.2 UniProtKB/TrEMBL
  ENSRNOT00000109448.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114691 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  RSP14 UniProtKB/TrEMBL
MGC_CLONE MGC:188048 IMAGE-MGC_LOAD
NCBI Gene 365552 ENTREZGENE
PANTHER PTHR15599:SF1 UniProtKB/TrEMBL
  RTDR1 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PhenoGen Rsph14 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
  HEAT_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001315 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K0V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YBH5_RAT UniProtKB/TrEMBL
  A0A8J8YHA7 ENTREZGENE, UniProtKB/TrEMBL
  A6JKM1 ENTREZGENE, UniProtKB/TrEMBL
  B1WC99 ENTREZGENE, UniProtKB/TrEMBL
  F1LNB6 ENTREZGENE
UniProt Secondary F1LNB6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-27 Rsph14  radial spoke head 14 homolog  Rtdr1  rhabdoid tumor deletion region gene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rtdr1  rhabdoid tumor deletion region gene 1   Rtdr1_predicted  rhabdoid tumor deletion region gene 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rtdr1_predicted  rhabdoid tumor deletion region gene 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED