Rsph14 (radial spoke head 14 homolog) - Rat Genome Database

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Gene: Rsph14 (radial spoke head 14 homolog) Heterocephalus glaber
Analyze
Symbol: Rsph14
Name: radial spoke head 14 homolog
RGD ID: 18915438
Description: ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); schizophrenia (ortholog); FOUND IN radial spoke (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rhabdoid tumor deletion region gene 1; Rtdr1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247479,416,373 - 9,502,716 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247479,416,411 - 9,504,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
radial spoke  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rsph14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247479,416,373 - 9,502,716 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247479,416,411 - 9,504,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RSPH14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,059,415 - 23,180,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,059,415 - 23,145,021 (-)EnsemblGRCh38hg38GRCh38
GRCh372223,401,593 - 23,484,177 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362221,731,593 - 21,814,241 (-)NCBINCBI36Build 36hg18NCBI36
Build 342221,726,147 - 21,808,795NCBI
Celera227,216,163 - 7,298,792 (-)NCBICelera
Cytogenetic Map22q11.22-q11.23NCBI
HuRef226,369,600 - 6,451,979 (-)NCBIHuRef
CHM1_12223,413,885 - 23,496,542 (-)NCBICHM1_1
T2T-CHM13v2.02223,482,278 - 23,603,314 (-)NCBIT2T-CHM13v2.0
Rsph14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391074,793,309 - 74,868,475 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1074,793,309 - 74,868,418 (-)EnsemblGRCm39 Ensembl
GRCm381074,957,477 - 75,032,642 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1074,957,477 - 75,032,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371074,420,222 - 74,495,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1076,005,258 - 76,080,363 (-)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1038.48NCBI
Rsph14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,626,707 - 13,702,817 (+)NCBIGRCr8
mRatBN7.22013,627,495 - 13,703,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,629,000 - 13,703,449 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2014,334,036 - 14,409,926 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,694,867 - 13,770,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02014,167,462 - 14,243,358 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02014,576,983 - 14,653,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2014,577,166 - 14,653,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02016,759,168 - 16,835,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,132,366 - 14,141,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12014,132,592 - 14,140,747 (+)NCBI
Celera2015,112,140 - 15,121,330 (+)NCBICelera
Cytogenetic Map20p12NCBI
Rsph14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554557,488,504 - 7,572,047 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554557,491,693 - 7,574,257 (-)NCBIChiLan1.0ChiLan1.0
RSPH14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22332,891,166 - 32,976,293 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12235,106,255 - 35,191,425 (+)NCBINHGRI_mPanPan1
PanPan1.12221,683,434 - 21,764,965 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2221,683,434 - 21,764,965 (-)Ensemblpanpan1.1panPan2
RSPH14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12627,749,071 - 27,827,433 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2627,749,077 - 27,827,050 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2626,824,965 - 26,903,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02629,152,954 - 29,231,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2629,152,987 - 29,229,269 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12627,236,275 - 27,314,375 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02626,853,968 - 26,932,030 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02627,842,980 - 27,921,136 (-)NCBIUU_Cfam_GSD_1.0
Rsph14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118142,494,804 - 142,572,315 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936619181,747 - 257,866 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,123,935 - 49,184,735 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,123,934 - 49,186,157 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21452,599,871 - 52,607,902 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103222901
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1192,740,897 - 2,824,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl192,741,212 - 2,824,031 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660854,376,557 - 4,386,026 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016905   ⟹   ENSHGLP00000016734
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247479,416,373 - 9,502,716 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000016906   ⟹   ENSHGLP00000016735
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247479,416,373 - 9,502,355 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000016907   ⟹   ENSHGLP00000016736
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247479,416,373 - 9,502,355 (-)Ensembl
RefSeq Acc Id: XM_004843529   ⟹   XP_004843586
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,416,411 - 9,502,610 (-)NCBI
RefSeq Acc Id: XM_013071687   ⟹   XP_012927141
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,416,411 - 9,504,342 (-)NCBI
RefSeq Acc Id: XM_021257266   ⟹   XP_021112925
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,416,411 - 9,504,561 (-)NCBI
RefSeq Acc Id: XM_021257267   ⟹   XP_021112926
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,416,411 - 9,504,081 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843586 (Get FASTA)   NCBI Sequence Viewer  
  XP_012927141 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112925 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112926 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016734
  ENSHGLP00000016736
RefSeq Acc Id: XP_021112925   ⟸   XM_021257266
RefSeq Acc Id: XP_012927141   ⟸   XM_013071687
RefSeq Acc Id: XP_021112926   ⟸   XM_021257267
RefSeq Acc Id: XP_004843586   ⟸   XM_004843529
Ensembl Acc Id: ENSHGLP00000016736   ⟸   ENSHGLT00000016907
Ensembl Acc Id: ENSHGLP00000016734   ⟸   ENSHGLT00000016905
Ensembl Acc Id: ENSHGLP00000016735   ⟸   ENSHGLT00000016906


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011976 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016905 ENTREZGENE
  ENSHGLT00000016907 ENTREZGENE
NCBI Gene Rsph14 ENTREZGENE
UniProt A0AAX6SX80_HETGA UniProtKB/TrEMBL