Alg12 (ALG12, alpha-1,6-mannosyltransferase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Alg12 (ALG12, alpha-1,6-mannosyltransferase) Rattus norvegicus
Analyze
Symbol: Alg12
Name: ALG12, alpha-1,6-mannosyltransferase
RGD ID: 1304826
Description: Predicted to enable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ig. Orthologous to human ALG12 (ALG12 alpha-1,6-mannosyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-1,6-mannosyltransferase ALG12; asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase); asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase; asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase (S. cerevisiae); dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase; LOC315212
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87121,774,796 - 121,789,175 (-)NCBIGRCr8
mRatBN7.27119,895,112 - 119,909,488 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7119,895,120 - 119,909,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,646,302 - 121,660,345 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07123,872,483 - 123,886,525 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07123,835,727 - 123,849,769 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07129,798,663 - 129,812,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7129,798,663 - 129,812,388 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,487,375 - 129,501,391 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,109,296 - 127,123,482 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,144,058 - 127,157,713 (-)NCBI
Celera7116,368,850 - 116,383,002 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:11983712   PMID:12477932   PMID:19946888  


Genomics

Comparative Map Data
Alg12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87121,774,796 - 121,789,175 (-)NCBIGRCr8
mRatBN7.27119,895,112 - 119,909,488 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7119,895,120 - 119,909,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,646,302 - 121,660,345 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07123,872,483 - 123,886,525 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07123,835,727 - 123,849,769 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07129,798,663 - 129,812,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7129,798,663 - 129,812,388 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,487,375 - 129,501,391 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,109,296 - 127,123,482 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,144,058 - 127,157,713 (-)NCBI
Celera7116,368,850 - 116,383,002 (-)NCBICelera
Cytogenetic Map7q34NCBI
ALG12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382249,859,311 - 49,918,438 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2249,900,229 - 49,918,438 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,293,877 - 50,312,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362248,682,856 - 48,698,110 (-)NCBINCBI36Build 36hg18NCBI36
Build 342248,617,716 - 48,632,967NCBI
Celera2234,218,131 - 34,233,386 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,243,697 - 33,258,951 (-)NCBIHuRef
CHM1_12250,255,612 - 50,270,866 (-)NCBICHM1_1
T2T-CHM13v2.02250,363,473 - 50,422,920 (-)NCBIT2T-CHM13v2.0
Alg12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,689,448 - 88,703,498 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,689,447 - 88,703,521 (-)EnsemblGRCm39 Ensembl
GRCm381588,805,243 - 88,819,318 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1588,805,244 - 88,819,318 (-)EnsemblGRCm38mm10GRCm38
MGSCv371588,635,673 - 88,649,748 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,633,011 - 88,647,050 (-)NCBIMGSCv36mm8
Celera1590,930,993 - 90,945,139 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.3NCBI
Alg12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,029,116 - 33,039,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,030,994 - 33,039,622 (-)NCBIChiLan1.0ChiLan1.0
ALG12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22359,787,148 - 59,817,924 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,472,880 - 62,502,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,110,873 - 30,139,359 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,126,228 - 49,136,740 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,126,234 - 49,136,740 (-)Ensemblpanpan1.1panPan2
ALG12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11017,293,945 - 17,300,982 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1017,293,552 - 17,300,974 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1017,273,167 - 17,280,240 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01018,022,529 - 18,029,613 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1018,022,383 - 18,030,178 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,745,893 - 17,752,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01018,068,971 - 18,076,042 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01018,201,146 - 18,208,214 (+)NCBIUU_Cfam_GSD_1.0
Alg12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945844,215 - 855,173 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936629844,277 - 864,874 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALG12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5717,028 - 729,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15716,928 - 727,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,955,687 - 110,960,330 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALG12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,395,413 - 32,420,160 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604592,975,582 - 92,992,252 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alg12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752732,648 - 754,146 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752745,133 - 754,055 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Alg12
53 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:121
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000065848
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7116677010124049952Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
AA893241  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27119,895,225 - 119,895,451 (+)MAPPERmRatBN7.2
Rnor_6.07129,798,777 - 129,799,002NCBIRnor6.0
Rnor_5.07129,487,489 - 129,487,714UniSTSRnor5.0
RGSC_v3.47127,109,410 - 127,109,635UniSTSRGSC3.4
Celera7116,368,964 - 116,369,189UniSTS
RH 3.4 Map9709.89UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000065848   ⟹   ENSRNOP00000061731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7119,895,121 - 119,909,416 (-)Ensembl
Rnor_6.0 Ensembl7129,798,663 - 129,812,388 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096721   ⟹   ENSRNOP00000082244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7119,895,120 - 119,909,458 (-)Ensembl
RefSeq Acc Id: NM_001108104   ⟹   NP_001101574
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,774,796 - 121,788,983 (-)NCBI
mRatBN7.27119,895,112 - 119,909,304 (-)NCBI
Rnor_6.07129,798,663 - 129,812,388 (-)NCBI
Rnor_5.07129,487,375 - 129,501,391 (-)NCBI
RGSC_v3.47127,109,296 - 127,123,482 (-)RGD
Celera7116,368,850 - 116,383,002 (-)RGD
Sequence:
RefSeq Acc Id: XM_017594874   ⟹   XP_017450363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,774,802 - 121,789,166 (-)NCBI
mRatBN7.27119,895,118 - 119,909,488 (-)NCBI
Rnor_6.07129,798,669 - 129,812,677 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594875   ⟹   XP_017450364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,774,802 - 121,788,976 (-)NCBI
mRatBN7.27119,895,116 - 119,908,994 (-)NCBI
Rnor_6.07129,798,669 - 129,812,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594876   ⟹   XP_017450365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,774,802 - 121,789,175 (-)NCBI
mRatBN7.27119,895,118 - 119,909,488 (-)NCBI
Rnor_6.07129,798,669 - 129,812,677 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594877   ⟹   XP_017450366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,774,802 - 121,788,976 (-)NCBI
mRatBN7.27119,895,116 - 119,909,275 (-)NCBI
Rnor_6.07129,798,669 - 129,812,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079303   ⟹   XP_038935231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,774,802 - 121,788,947 (-)NCBI
mRatBN7.27119,895,116 - 119,909,044 (-)NCBI
RefSeq Acc Id: NP_001101574   ⟸   NM_001108104
- Peptide Label: precursor
- UniProtKB: B1WBY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450365   ⟸   XM_017594876
- Peptide Label: isoform X1
- UniProtKB: B1WBY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450363   ⟸   XM_017594874
- Peptide Label: isoform X1
- UniProtKB: B1WBY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450366   ⟸   XM_017594877
- Peptide Label: isoform X1
- UniProtKB: B1WBY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450364   ⟸   XM_017594875
- Peptide Label: isoform X1
- UniProtKB: B1WBY3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061731   ⟸   ENSRNOT00000065848
RefSeq Acc Id: XP_038935231   ⟸   XM_039079303
- Peptide Label: isoform X1
- UniProtKB: B1WBY3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082244   ⟸   ENSRNOT00000096721

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBY3-F1-model_v2 AlphaFold B1WBY3 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695573
Promoter ID:EPDNEW_R6098
Type:single initiation site
Name:Alg12_1
Description:ALG12, alpha-1,6-mannosyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07129,812,412 - 129,812,472EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304826 AgrOrtholog
BioCyc Gene G2FUF-32487 BioCyc
BioCyc Pathway MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS [protein N-glycosylation initial phase (eukaryotic)] BioCyc
BioCyc Pathway Image MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS BioCyc
Ensembl Genes ENSRNOG00000004591 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065848.2 UniProtKB/TrEMBL
  ENSRNOT00000096721.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9022144 IMAGE-MGC_LOAD
InterPro Alg9_trans UniProtKB/TrEMBL
KEGG Report rno:315212 UniProtKB/TrEMBL
MGC_CLONE MGC:187715 IMAGE-MGC_LOAD
NCBI Gene 315212 ENTREZGENE
PANTHER Alg9_trans UniProtKB/TrEMBL
  PTHR22760:SF1 UniProtKB/TrEMBL
Pfam Glyco_transf_22 UniProtKB/TrEMBL
PhenoGen Alg12 PhenoGen
RatGTEx ENSRNOG00000004591 RatGTEx
UniProt A0A8I5ZU43_RAT UniProtKB/TrEMBL
  B1WBY3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Alg12  ALG12, alpha-1,6-mannosyltransferase  Alg12  asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-16 Alg12  asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase  Alg12  asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Alg12  asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase (S. cerevisiae)  Alg12  asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Alg12  asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)   Alg12_predicted  asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Alg12_predicted  asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (predicted)      Symbol and Name status set to approved 70820 APPROVED