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Gene: BRF2 (BRF2 RNA polymerase III transcription initiation factor subunit) Canis lupus familiaris

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Symbol:

BRF2

Name:

BRF2 RNA polymerase III transcription initiation factor subunit (Ensembl:BRF2ral transcription factor IIIB subunit)

RGD ID:

12302959

Description:

ENCODES a protein that exhibits metal ion binding (inferred); RNA polymerase III type 3 promoter sequence-specific DNA binding (inferred); TBP-class protein binding (inferred); INVOLVED IN cellular response to oxidative stress (inferred); DNA-templated transcription (inferred); DNA-templated transcription initiation (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred); transcription factor TFIIIB complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit; BRF2, RNA polymerase III transcription initiation factor subunit; BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like; transcription factor IIIB 50 kDa subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	27,543,588 - 27,547,712 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	27,543,858 - 27,547,106 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	28,060,505 - 28,064,459 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	29,442,854 - 29,446,808 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	29,442,903 - 29,446,805 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	27,664,474 - 27,668,427 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	28,242,034 - 28,245,988 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	28,281,218 - 28,285,171 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to oxidative stress (IEA)

DNA-templated transcription (IEA)

DNA-templated transcription initiation (IEA)

positive regulation of transcription by RNA polymerase III (IEA)

regulation of transcription by RNA polymerase III (IEA)

transcription by RNA polymerase II (IEA)

transcription preinitiation complex assembly (IEA)

Cellular Component

nucleolus (IEA)

nucleus (IBA,IEA)

transcription factor TFIIIB complex (IEA)

transcription preinitiation complex (IBA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II general transcription initiation factor activity (IBA)

RNA polymerase III type 3 promoter sequence-specific DNA binding (IEA)

TBP-class protein binding (IBA,IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase III transcription pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

BRF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	27,543,588 - 27,547,712 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	27,543,858 - 27,547,106 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	28,060,505 - 28,064,459 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	29,442,854 - 29,446,808 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	29,442,903 - 29,446,805 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	27,664,474 - 27,668,427 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	28,242,034 - 28,245,988 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	28,281,218 - 28,285,171 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

BRF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	37,843,268 - 37,849,861 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	37,843,268 - 37,849,861 (-)	Ensembl			hg38	GRCh38
GRCh37	8	37,700,786 - 37,707,379 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	37,820,558 - 37,826,569 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	37,820,562 - 37,826,569	NCBI
Celera	8	36,652,978 - 36,659,011 (-)	NCBI		Celera
Cytogenetic Map	8	p11.23	NCBI
HuRef	8	36,235,927 - 36,241,960 (-)	NCBI		HuRef
CHM1_1	8	37,902,845 - 37,908,878 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	38,119,669 - 38,126,265 (-)	NCBI		T2T-CHM13v2.0

Brf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	27,613,367 - 27,618,743 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	27,613,392 - 27,618,708 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	27,123,339 - 27,128,715 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	27,123,364 - 27,128,680 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	28,234,304 - 28,239,104 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	28,589,768 - 28,594,568 (-)	NCBI		MGSCv36	mm8
Celera	8	28,613,490 - 28,618,293 (-)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI
cM Map	8	15.91	NCBI

Brf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	71,626,146 - 71,635,909 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	71,623,238 - 71,635,903 (+)	Ensembl				GRCr8
mRatBN7.2	16	64,928,334 - 64,933,057 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	64,928,300 - 64,933,059 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	70,211,909 - 70,216,635 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	73,618,242 - 73,622,968 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	68,863,717 - 68,868,440 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	16	71,550,447 - 71,555,170 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	16	72,923,581 - 72,928,304 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	16	73,424,566 - 73,429,289 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	16	69,588,315 - 69,593,034 (+)	NCBI		F344_StmMcwi
Rnor_6.0	16	69,089,955 - 69,094,678 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	69,089,955 - 69,094,680 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	68,763,911 - 68,768,633 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	69,250,416 - 69,255,138 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	62,847,875 - 62,852,598 (+)	NCBI		Celera
RGSC_v3.1	16	69,250,621 - 69,255,340 (+)	NCBI
Cytogenetic Map	16	q12.3	NCBI

Brf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	13,547,071 - 13,554,277 (-)	Ensembl
ChiLan1.0	NW_004955463	13,549,571 - 13,553,946 (-)	NCBI	ChiLan1.0	ChiLan1.0

BRF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	56,404,884 - 56,410,953 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	32,122,595 - 32,128,045 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	37,144,341 - 37,150,371 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	34,321,741 - 34,327,625 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	34,321,746 - 34,327,622 (-)	Ensembl			panPan2	panpan1.1

Brf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	50,160,010 - 50,164,914 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936710	1,293,129 - 1,301,048 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936710	1,296,475 - 1,301,752 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	48,568,202 - 48,573,029 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	48,568,207 - 48,573,036 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	55,684,661 - 55,689,474 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	35,879,762 - 35,885,572 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	35,880,373 - 35,885,485 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	6,118,831 - 6,124,752 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624780	5,751,435 - 5,757,447 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624780	5,752,018 - 5,757,323 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Brf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	59,387,505 - 59,392,216 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in BRF2
47 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038497636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038560103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038624150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038689903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_844917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000010003 ⟹ ENSCAFP00000009282

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	16	27,543,858 - 27,547,106 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000085118 ⟹ ENSCAFP00000055961

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	16	27,543,858 - 27,545,073 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845024286 ⟹ ENSCAFP00845019078

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	29,442,903 - 29,446,805 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845024292 ⟹ ENSCAFP00845019083

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	29,442,903 - 29,444,166 (+)	Ensembl

RefSeq Acc Id:

XM_038497636 ⟹ XP_038353564

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	16	27,664,474 - 27,668,427 (+)	NCBI

RefSeq Acc Id:

XM_038560103 ⟹ XP_038416031

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	16	28,281,218 - 28,285,171 (+)	NCBI

RefSeq Acc Id:

XM_038624150 ⟹ XP_038480078

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	16	28,242,034 - 28,245,988 (+)	NCBI

RefSeq Acc Id:

XM_038689903 ⟹ XP_038545831

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	16	29,442,854 - 29,446,808 (+)	NCBI

RefSeq Acc Id:

XM_844917 ⟹ XP_850010

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	16	27,543,588 - 27,547,712 (+)	NCBI
Dog10K_Boxer_Tasha	16	28,060,505 - 28,064,459 (+)	NCBI

Sequence:

show sequence

TCGGACCACAGATACCACCGGACGCCAAGACGCGGTCCAGGCCAGGAACCTCTTTTTATAGCTC
ACATTTCTACCCGAGCCGTCAGGGAAACGGACCGGAAGTGTGCGAGGCCTGCCGCCCGAACTAC
CTACGTATCCCGCGTTGCTCTGGAGCCGGAAGAGGAAGGTGCACCGCGTAGAAGGCTTCCCTCC
TAGTTCCGGTTTCTCCACCGTTGCTCTTGCAGGCGTGGGCCCGGGTGCCCGGGGGCTTCTGCGG
CTCTGGGTTGTGAGATGCCGGGTGGAGGCCGCTGCCCCGACTGCGGGTCCGCTGAGCTCGTGGA
CGACTCGCACTACTCGCAGAGCCAGCTGGTGTGCTCAGACTGTGGCTGCGTGGTCACCGAGGGA
GTCCTTACGACCACCTTCAGCGACGAAGGCAACCTCCGAGAAGTAACCTATTCCCGAAGCACAG
GGGAAAACGAACAAGTCAGTCGCAGCCAGCAACGAGGTCTCCGCAGAGTGAGAGACCTCTGTCG
AGTTCTGCAGCTGCCATCAACCTTTGAGGACACAGCAGTTGCCTACTACCAGCAAGCGTACCGG
CACTCTGGCATCCGTGCTGCCAGGCTGCAAAAGAAGGAAGTGTTGGTTGGCTGCTGTGTCTTAA
TTACCTGCCGACAGCATAACTGGCCCCTCACCATGGGAACCATCTGCGCCCTGCTGTATGCAGA
TTTGGAAGTGTTTTCTGGCACCTACATGCAGATAGTGAAGCTCCTGGGGCTGGATGTGCCATCC
CTCTGCTTGGCGGACCTGGTGAAGACTTACTGTAGCAGCTTCAAACTGTTCCAAGCTTCCCCGT
CTGTTCCAGCCAAATATGTGGAGGACAAAGAGAAGATGCTGTCGCGAACATTGCAGTTGGTGGA
GCTGGCAGACGAGACATGGTTGGTGACCGGGCGGCACCCCTTGCCTGTCATCACCGCTGCTACC
TTCCTGGCTTGGCAGTCACTGCAGCCTTCGGAGCGTCTGACCTGTTCACTTGCCCGATTTTGTA
AATTGGCAAATGTGGACCTGCCCTGCCCTGCTTCCTCCCGCCTGCAGGAGCTGCTGGCTGTGCT
GCTGCGGATGGCCGAGCAGCTGGCCTGGCTGCAGGTTCTGAGGCTTGACAAACGATCTGTGGTG
AAGCACATTGGTGACCTTCTCCAGCACCGGCACACGTTGGTTCGCAAGGCCTTTCGAGACGGAA
CAGCAGAGTTGGAAGCCGGGGAGAAGCAGCAGCAGGGTTGGGGCAAGAGCCCAGGGCAGGGAAA
AGAGGAGGCAGCGACGAGTTCCTTAGATCGGCCCGAGGGCAAGAGACCAGCTAGTCCTGCCCTT
CTTCTCCCACCTTGCATGTTGAAGCCCCCGAAGCGGATCTGTCCCCCACCCCCTATCTCCACAG
TCACCGGAGATGAGGACATTTCTGATAGTGAAATAGAGCAGTATCTGCGTACTCCTCAGGAAGT
TAGGGACTTTCAGAAAGCTCAGGCTGCAAGACAGGCTGCCATAGGGGTATCAAACCCTCCCTGA
TGTGCATCCAGGGGAGCACTCACACCATTCCTGCAGCAGCTTGACAATAGACCTATCACTTCTG
GAGAAGTGAGTGTATGTGAGTCCTGAGATATTTATTTTTTCTTATTTAAAGTAACCATGGGACT
CTGTGCAGTTAATTGGACCCTGGGTCCTGGAGTAGTAGCTGGGAGCAGTGCAGGGACAGTGGGT
TTGGAGAGAATCCCATCTGTTGGTGCCAGGGAGGAAGGTGCAGATGTTCATACTACGAGGGATG
GCTTTCCTCCTAGACAGGTTGGAGGGTGCCAGGCTTTCTCCTGGTTTGTATTGGATACACTGCT
GCTCCAGGCCTGCCAGGCCCTTCCTGCTCATGTGGAGTGGTTGGTGTTTTGAAAGCTATCAGCC
CTCAGAGGACAGGAATTGGGCGGCTCCTGGCCCTATGTCATTTGTAGATTGATGGGTTCTTGTG
TATGGGGTTGGGGGTTTTAAAATCCTCTACCTCATAACAAAAGGACCATGGGTGGACTAAAGTT
ATATAGCTCATAGGGCTTTGCAAAATTTTAATATATTAAAACAAGAGGCATCTGCTAAAAAACA
TTCTATTGTATAAAACCCGAGCTTTTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038353564	(Get FASTA)	NCBI Sequence Viewer
	XP_038416031	(Get FASTA)	NCBI Sequence Viewer
	XP_038480078	(Get FASTA)	NCBI Sequence Viewer
	XP_038545831	(Get FASTA)	NCBI Sequence Viewer
	XP_850010	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000009282.2
	ENSCAFP00000055961.1
	ENSCAFP00030025277.1
	ENSCAFP00030025309.1
	ENSCAFP00040018191.1
	ENSCAFP00040018230.1
	ENSCAFP00845019078
	ENSCAFP00845019078.1
	ENSCAFP00845019083.1

RefSeq Acc Id:

XP_850010 ⟸ XM_844917

- UniProtKB:

A0A8C0SA95 (UniProtKB/TrEMBL), A0A8C0JLQ4 (UniProtKB/TrEMBL), A0A8I3NRI4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPGGGRCPDCGSAELVDDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTGENEQ
VSRSQQRGLRRVRDLCRVLQLPSTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGCCVLITCRQ
HNWPLTMGTICALLYADLEVFSGTYMQIVKLLGLDVPSLCLADLVKTYCSSFKLFQASPSVPAK
YVEDKEKMLSRTLQLVELADETWLVTGRHPLPVITAATFLAWQSLQPSERLTCSLARFCKLANV
DLPCPASSRLQELLAVLLRMAEQLAWLQVLRLDKRSVVKHIGDLLQHRHTLVRKAFRDGTAELE
AGEKQQQGWGKSPGQGKEEAATSSLDRPEGKRPASPALLLPPCMLKPPKRICPPPPISTVTGDE
DISDSEIEQYLRTPQEVRDFQKAQAARQAAIGVSNPP

hide sequence

Ensembl Acc Id:

ENSCAFP00000009282 ⟸ ENSCAFT00000010003

Ensembl Acc Id:

ENSCAFP00000055961 ⟸ ENSCAFT00000085118

RefSeq Acc Id:

XP_038353564 ⟸ XM_038497636

RefSeq Acc Id:

XP_038480078 ⟸ XM_038624150

RefSeq Acc Id:	XP_038545831 ⟸ XM_038689903
- UniProtKB:	A0A8C0SA95 (UniProtKB/TrEMBL), A0A8C0JLQ4 (UniProtKB/TrEMBL), A0A8I3NRI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038416031 ⟸ XM_038560103
- UniProtKB:	A0A8C0JLQ4 (UniProtKB/TrEMBL), A0A8C0SA95 (UniProtKB/TrEMBL), A0A8I3NRI4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845019078 ⟸ ENSCAFT00845024286

Ensembl Acc Id:

ENSCAFP00845019083 ⟸ ENSCAFT00845024292

Protein Domains

TFIIB-type

Promoters

RGD ID:

13686103

Promoter ID:

EPDNEW_C4171

Type:

multiple initiation site

Name:

BRF2_1

Description:

BRF2, RNA polymerase III transcription initiation factor subunit

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	16	27,543,799 - 27,543,859	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006183	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030015746	UniProtKB/TrEMBL
	ENSCAFG00040011334	UniProtKB/TrEMBL
	ENSCAFG00845013627	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000010003.3	UniProtKB/TrEMBL
	ENSCAFT00000085118.2	UniProtKB/TrEMBL
	ENSCAFT00030028996.1	UniProtKB/TrEMBL
	ENSCAFT00030029034.1	UniProtKB/TrEMBL
	ENSCAFT00040020955.1	UniProtKB/TrEMBL
	ENSCAFT00040020996.1	UniProtKB/TrEMBL
	ENSCAFT00845024286	ENTREZGENE
	ENSCAFT00845024286.1	UniProtKB/TrEMBL
	ENSCAFT00845024292.1	UniProtKB/TrEMBL
Gene3D-CATH	2.20.25.10	UniProtKB/TrEMBL
	Cyclin-like	UniProtKB/TrEMBL
InterPro	BRF2-like_C	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	TFIIB	UniProtKB/TrEMBL
	TFIIB_cyclin	UniProtKB/TrEMBL
	Znf_TFIIB	UniProtKB/TrEMBL
KEGG Report	cfa:608026	UniProtKB/TrEMBL
NCBI Gene	BRF2	ENTREZGENE
PANTHER	PTHR11618	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR IIIB 50 KDA SUBUNIT	UniProtKB/TrEMBL
Pfam	BRF2-like_C_cyclin_rpt	UniProtKB/TrEMBL
	TF_Zn_Ribbon	UniProtKB/TrEMBL
	TFIIB	UniProtKB/TrEMBL
PROSITE	ZF_TFIIB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47954	UniProtKB/TrEMBL
	Zinc beta-ribbon	UniProtKB/TrEMBL
UniProt	A0A8C0JLQ4	ENTREZGENE
	A0A8C0NIS9_CANLF	UniProtKB/TrEMBL
	A0A8C0SA95	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NRI4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S088_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:38524	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-16	BRF2	BRF2 RNA polymerase III transcription initiation factor subunit		BRF2, RNA polymerase III transcription initiation factor subunit	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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