RGD Reference Report - Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. - Rat Genome Database

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Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes.

Authors: Hultin, T 
Citation: Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
RGD ID: 11036081
Pubmed: PMID:3730400   (View Abstract at PubMed)

Rat liver and mouse ascitic tumour ribosomal proteins are cross-linked selectively in good yield with the newly developed cleavable heterobifunctional reagents 2-(4-hydroxy-2-maleimidophenylazo)benzoic acid N-hydroxysuccinimide ester (reagent A) and 4-(4-hydroxy-3-maleimidophenylazo)[carboxyl-14C]benzoic acid N-hydroxysuccinimide ester (reagent B). The primary function of the reagents, an N-aroylated maleimide, binds quantitatively at low pH to accessible cysteine groups. After eliminating the free reagent, the pH is increased to make the secondary function, a juxtanuclear aroyl ester, reactive against neighboring amino groups, essentially lysine. The spacer, 4-phenylazophenol, is readily cleaved by reduction with dithionite. The ranges of cross-linking of the two reagents are approx. 8 and 12 A, respectively. Using the radiolabelled reagent B the secondarily attached protein (and its contact sequence) is made recognizable even in trace amounts. The order of binding of the interacting proteins is thereby established. The two reagents produce similar, but not identical, patterns of selective cross-linking. The following protein complexes are readily observed after conventional staining. With reagent A: S8-S11, L4-L14, L4-L18, L6-L29 and L21-L18a. With the radioactive, longer-range reagent B: L4 ---- L13a, L4 ---- L18, L4 ---- L18a, L4 ---- L26, L6 ---- L29, L14 ---- L13a, L21 ---- L18a and L27 ---- L30 (arrows indicating the direction of binding). Ternary and quaternary complexes are also obtained, especially of the large protein L4. With both reagents a protein designated L6' is cross-linked to L23. The predominant cross-linked complexes can be obtained on a preparative scale for isolation and characterization of contact sequences by optional fragmentation and fractionation methods.



Gene Ontology Annotations    Click to see Annotation Detail View

Cellular Component

  
Object SymbolSpeciesTermQualifierEvidenceWithNotesSourceOriginal Reference(s)
Rpl14Ratcytosolic large ribosomal subunit  IDA  RGD 
Rpl18Ratcytosolic large ribosomal subunit  IDA  RGD 
Rpl4Ratcytosolic large ribosomal subunit  IDA  RGD 
Rpl6Ratcytosolic large ribosomal subunit  IDA  RGD 
Rpl13aRatribosome  IDA  RGD 
Rpl18aRatribosome  IDA  RGD 
Rpl21Ratribosome  IDA  RGD 
Rpl23Ratribosome  IDA  RGD 
Rpl27Ratribosome  IDA  RGD 
Rpl29Ratribosome  IDA  RGD 
Rpl3Ratribosome  IDA  RGD 
Rpl30Ratribosome  IDA  RGD 
Rpl7Ratribosome  IDA  RGD 
Rpl7aRatribosome  IDA  RGD 

Objects Annotated

Genes (Rattus norvegicus)
Rpl13a  (ribosomal protein L13A)
Rpl14  (ribosomal protein L14)
Rpl18  (ribosomal protein L18)
Rpl18a  (ribosomal protein L18A)
Rpl21  (ribosomal protein L21)
Rpl23  (ribosomal protein L23)
Rpl27  (ribosomal protein L27)
Rpl29  (ribosomal protein L29)
Rpl3  (ribosomal protein L3)
Rpl30  (ribosomal protein L30)
Rpl4  (ribosomal protein L4)
Rpl6  (ribosomal protein L6)
Rpl7  (ribosomal protein L7)
Rpl7a  (ribosomal protein L7A)


Additional Information