Ari5_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Ari5_m (antibody response to influenza 5, day 15, IgG1 (mouse)) Mus musculus

Symbol: Ari5_m
Name: antibody response to influenza 5, day 15, IgG1 (mouse)
RGD ID: 35673309
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391639,820,362 - 44,520,363MOUSEQTLGRCm39
GRCm381640,000,000 - 44,700,000MOUSEQTLGRCm38
cM Map16syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:32348764  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736079Lsamplimbic system-associated membrane protein163980467442002042Mouse
39128352Gm53260predicted gene, 53260163980509639845227Mouse
14999139Gm22543predicted gene, 22543164012658540126674Mouse
5143326Gm18235predicted gene, 18235164021984640221104Mouse
401711521LOC131388496STARR-seq mESC enhancer starr_40843164039001240390956Mouse
401711905LOC131388497STARR-seq mESC enhancer starr_40844164043658540437944Mouse
401711153LOC131388498STARR-seq mESC enhancer starr_40845164044090340442372Mouse
15023031Gm52230predicted gene, 52230164051345640535981Mouse
401708214LOC131388499STARR-seq mESC enhancer starr_40846164054625140547335Mouse
401711809LOC131388500STARR-seq mESC enhancer starr_40847164063401140635336Mouse
401707811LOC131388501STARR-seq mESC enhancer starr_40848164078393240785262Mouse
401705233LOC131388502STARR-seq mESC enhancer starr_40849164088035240881652Mouse
401703658LOC131388503STARR-seq mESC enhancer starr_40850164096687340968433Mouse
401704408LOC131388504STARR-seq mESC enhancer starr_40851164101550541016016Mouse
401715970LOC131388505STARR-seq mESC enhancer starr_40852164102235341023305Mouse
401706125LOC131388506STARR-seq mESC enhancer starr_40853164122547441226447Mouse
401712753LOC131388507STARR-seq mESC enhancer starr_40854164144265841443418Mouse
39128733Gm53955predicted gene, 53955164144327041493383Mouse
401708774LOC131388508STARR-seq mESC enhancer starr_40855164145428641454775Mouse
39130697Gm53259predicted gene, 53259164149614141638568Mouse
401709446LOC131388509STARR-seq mESC enhancer starr_40856164165002141651213Mouse
12798269Gm46551predicted gene, 46551164165256241672218Mouse
401710469LOC131388510STARR-seq mESC enhancer starr_40857164180395841805145Mouse
15017956Gm52229predicted gene, 52229164180751141907362Mouse
401707719LOC131388511STARR-seq mESC enhancer starr_40858164184265541843544Mouse
401716370LOC131388512STARR-seq mESC enhancer starr_40859164188509441887163Mouse
15001017Gm49738predicted gene, 49738164201704542017765Mouse
737443Gap43growth associated protein 43164206891542161014Mouse
401711791LOC131388513STARR-seq mESC enhancer starr_40861164211740442119099Mouse
9664191Mir6540microRNA 6540164212372542123832Mouse
401707734LOC131388514STARR-seq mESC enhancer starr_40862164212562042127729Mouse
401707352LOC131388515STARR-seq mESC enhancer starr_40865164239417242396933Mouse
9642747Gm29960predicted gene, 29960164246218842472983Mouse
16122274932412D23RikRIKEN cDNA 4932412D23 gene164254606542696125Mouse
401709238LOC131388516STARR-seq mESC enhancer starr_40870164260096542603307Mouse
401834506LOC132444036STARR-positive B cell enhancer mm9_chr16:42836127-42836428164265637742656678Mouse
401712812LOC131388517STARR-seq mESC enhancer starr_40871164267178342673032Mouse
401835166LOC132444037STARR-positive B cell enhancer ABC_E52164269572542696026Mouse
5136428Gm19522predicted gene, 19522164270473342732433Mouse
1557085Zbtb20zinc finger and BTB domain containing 20164272800843462981Mouse
1621382Ndufs5-psNADH:ubiquinone oxidoreductase core subunit S5, pseudogene164277594342776442Mouse
401707946LOC131388518STARR-seq mESC enhancer starr_40874164280549042806350Mouse
401714849LOC131388519STARR-seq mESC enhancer starr_40875164293311842934284Mouse
14997715Gm25873predicted gene, 25873164294659642946702Mouse
401716262LOC131388520STARR-seq mESC enhancer starr_40877164296276542963838Mouse
401716960LOC131388521STARR-seq mESC enhancer starr_40878164297682342978219Mouse
5147154Gm15712predicted gene 15712164300494243006091Mouse
401717440LOC131388522STARR-seq mESC enhancer starr_40879164313002743131118Mouse
2299048Gm15711predicted gene 15711164313285643133628Mouse
1616082Gm9968predicted gene 9968164316624443184029Mouse
7177961Gm15713predicted gene 15713164323088143240559Mouse
401706261LOC131388523STARR-seq mESC enhancer starr_40880164328398343287180Mouse
401702418LOC131388524STARR-seq mESC enhancer starr_40881164330609143307511Mouse
401838898LOC132444038STARR-positive B cell enhancer mm9_chr16:43507109-43507410164332735943327660Mouse
401701304LOC131388525STARR-seq mESC enhancer starr_40882164332805143329669Mouse
401716806LOC131388526STARR-seq mESC enhancer starr_40883164339369443396502Mouse
401712699LOC131388527STARR-seq mESC enhancer starr_40885164342676943428505Mouse
2314078Mir568microRNA 568164346101843461100Mouse
2294384TigitT cell immunoreceptor with Ig and ITIM domains164346922443485494Mouse
401833455LOC132444039STARR-positive B cell enhancer ABC_E7450164347560443475905Mouse
401833604LOC132444040STARR-positive B cell enhancer ABC_E4170164348185443482155Mouse
39131083Gm53956predicted gene, 53956164350645043517032Mouse
163701114LOC128927521CapStarr-seq enhancer MGSCv37_chr16:43690256-43690365164351050643510615Mouse
401837963LOC132444041STARR-positive B cell enhancer mm9_chr16:43698828-43699128164351907843519378Mouse
401838803LOC132444042STARR-positive B cell enhancer ABC_E1923164353004643530347Mouse
401710026LOC131388528STARR-seq mESC enhancer starr_40886164353030643531287Mouse
735750Drd3dopamine receptor D3164357428543646353Mouse
401715550LOC131388529STARR-seq mESC enhancer starr_40887164361993043622837Mouse
15002112Gm26074predicted gene, 26074164365404643654174Mouse
1553381Qtrt2queuine tRNA-ribosyltransferase accessory subunit 2164368187943710063Mouse
401703701LOC131388530STARR-seq mESC enhancer starr_40888164368657543689013Mouse
14999460Gm25989predicted gene, 25989164370704543707177Mouse
401839898LOC132444043STARR-positive B cell enhancer ABC_E1924164370993243710233Mouse
1622125Ccdc191coiled-coil domain containing 191164371017243784677Mouse
401840027LOC132444044STARR-positive B cell enhancer mm9_chr16:43951746-43952047164377199643772297Mouse
1618774Zdhhc23zinc finger, DHHC domain containing 23164378539643800295Mouse
12793130Gm46552predicted gene, 46552164380037243803715Mouse
1313460Gramd1cGRAM domain containing 1C164380071343883757Mouse
401708940LOC131388531STARR-seq mESC enhancer starr_40889164382511443826522Mouse
4888703Mir3470bmicroRNA 3470b164383421543834340Mouse
401712247LOC131388532STARR-seq mESC enhancer starr_40890164385964243862053Mouse
401705969LOC131388533STARR-seq mESC enhancer starr_40891164386602043867763Mouse
1622415Atp6v1aATPase, H+ transporting, lysosomal V1 subunit A164390576543960055Mouse
401715664LOC131388534STARR-seq mESC enhancer starr_40894164392092143922803Mouse
401715924LOC131388535STARR-seq mESC enhancer starr_40895164395932043960417Mouse
1322132Naa50N(alpha)-acetyltransferase 50, NatE catalytic subunit164396015443983825Mouse
401836517LOC132444045STARR-positive B cell enhancer ABC_E9932164396090143961201Mouse
401709934LOC131388536STARR-seq mESC enhancer starr_40896164397919243980358Mouse
401834556LOC132444046STARR-positive B cell enhancer ABC_E11613164399254143992841Mouse
401841776LOC132444047STARR-positive B cell enhancer ABC_E2462164399323743993538Mouse
1614969Usf3upstream transcription factor family member 3164399356644047828Mouse
1621987Sidt1SID1 transmembrane family, member 1164406054044153575Mouse
401709547LOC131388537STARR-seq mESC enhancer starr_40897164409968444102468Mouse
401705729LOC131388538STARR-seq mESC enhancer starr_40898164415898844160737Mouse
1332173Spice1spindle and centriole associated protein 1164416776144208857Mouse
401702113LOC131388539STARR-seq mESC enhancer starr_40899164417758544179097Mouse
1619017Cfap44cilia and flagella associated protein 44164421510344303057Mouse
401701420LOC131388540STARR-seq mESC enhancer starr_40902164421805344219525Mouse
401707022LOC131388541STARR-seq mESC enhancer starr_40903164426134244262764Mouse
401703740LOC131388542STARR-seq mESC enhancer starr_40904164429465844296397Mouse
1312052BocBOC cell adhesion associated, oncogene regulated164430540844379233Mouse
39131032LOC108165616Boc Hedgehog-responsive enhancer164432241544323596Mouse
401710185LOC131388543STARR-seq mESC enhancer starr_40905164433661744338130Mouse
39130845LOC110120555VISTA enhancer mm1504164434910944354877Mouse
9598602Gm30064predicted gene, 30064164435073644357492Mouse
4888678Mir3081microRNA 3081164437840944378492Mouse
401715227LOC131388544STARR-seq mESC enhancer starr_40907164438790244388856Mouse
2307589Rpl27a-ps3ribosomal protein L27A, pseudogene 3164439860044399036Mouse
9617156Gm30252predicted gene, 30252164443659244442553Mouse
12798273Gm46571predicted gene, 46571164444959444455810Mouse
401709151LOC131388545STARR-seq mESC enhancer starr_40908164444968344451150Mouse
9636434Gm30311predicted gene, 30311164448134144485827Mouse
39130905LOC114827942VISTA enhancer mm1637164449164544493479Mouse
163660455LOC128927522CapStarr-seq enhancer MGSCv37_chr16:44692039-44692222164451228944512472Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4141985Nhil2_mnon-heme iron levels 2 (mouse)Not determined164414181044806480Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163606085745511148Mouse
35673309Ari5_mantibody response to influenza 5, day 15, IgG1 (mouse)163982036244520363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6436506 MouseQtl