Tincr (TINCR ubiquitin domain containing)

Gene: Tincr (TINCR ubiquitin domain containing) Rattus norvegicus

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Symbol:

Tincr

Name:

TINCR ubiquitin domain containing

RGD ID:

9685200

Description:

Orthologous to human TINCR (TINCR ubiquitin domain containing); INTERACTS WITH acetamide; aflatoxin B1 (ortholog); antirheumatic drug (ortholog).

Type:

ncrna

RefSeq Status:

REVIEWED

Previously known as:

LOC104940696; tissue differentiation-inducing non-protein coding RNA; tissue differentiation-inducing non-protein coding RNA-like

RGD Orthologs

Human

Mouse

Bonobo

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	1,474,238 - 1,476,470 (-)	NCBI		GRCr8
mRatBN7.2	9	1,387,105 - 1,389,337 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	9	1,820,553 - 1,822,785 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	7,170,710 - 7,172,942 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	6,125,756 - 6,127,988 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	10,499,290 - 10,501,522 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	9	7,124,251 - 7,126,483 (+)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

acetamide (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

butanal (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

diarsenic trioxide (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

entinostat (ISO)

mercury dibromide (ISO)

Monomethyl phthalate (ISO)

p-chloromercuribenzoic acid (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

propofol (ISO)

SB 431542 (ISO)

triptonide (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:34732848	PMID:35013106

Genomics

Comparative Map Data

Tincr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	1,474,238 - 1,476,470 (-)	NCBI		GRCr8
mRatBN7.2	9	1,387,105 - 1,389,337 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	9	1,820,553 - 1,822,785 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	7,170,710 - 7,172,942 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	6,125,756 - 6,127,988 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	10,499,290 - 10,501,522 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	9	7,124,251 - 7,126,483 (+)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

TINCR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	5,558,167 - 5,567,953 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	5,558,167 - 5,578,349 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	5,558,178 - 5,567,964 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	5,509,176 - 5,519,039 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	5,510,363 - 5,518,965	NCBI
Celera	19	5,495,533 - 5,505,358 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	5,319,454 - 5,329,279 (-)	NCBI		HuRef
CHM1_1	19	5,557,754 - 5,567,578 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	5,544,852 - 5,554,635 (-)	NCBI		T2T-CHM13v2.0

Tincr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	56,858,414 - 56,861,403 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	56,858,414 - 56,861,439 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	56,551,414 - 56,554,387 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	56,551,414 - 56,554,387 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	56,690,840 - 56,693,810 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	17	60,895,625 - 60,898,595 (-)	NCBI		Celera
Cytogenetic Map	17	D	NCBI
cM Map	17	29.39	NCBI

TINCR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	9,954,676 - 9,964,831 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	9,180,839 - 9,190,991 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	4,575,327 - 4,585,503 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	5,512,272 - 5,516,407 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

Variants

Variants in Tincr
1 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054141	Gmadr4	Adrenal mass QTL 4	2.45	0.0074	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	9	1	14209783	Rat
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_130129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BF412518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ210153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK479594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO393844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NR_130129

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	1,474,238 - 1,476,470 (-)	NCBI
mRatBN7.2	9	1,387,105 - 1,389,337 (-)	NCBI
Rnor_6.0	9	10,499,290 - 10,501,522 (+)	NCBI
Celera	9	7,124,251 - 7,126,483 (+)	NCBI

Sequence:

show sequence

CTCCATCTCTTTCAGTGTCTGCCCACTCACTTCGGAGGGTGGCAGGACAAACAGCCCTGGGCCA
CTACTGTACCCTATCCCAAGCCTGTGTGTCTACACTGTGCTCTGTGTCTCCAGTGGGGCCAAGG
CTCACTTCAGCTCAACTCCTGGACTAGCTGGAAAGGCCTAGAAGCCAAGTGCTTTTGTCCTTAC
CTTGTCTCTTTGTGTCCACCTCTCAGGTAGGAGATGGAGCAGTGACTTTAGTGATACAGGATGC
TGGCTGAGGGAGCAAACTGGGCCAGGAGGCACCATACCTCTCTTCCTGGGAGCCCAGTTGTACT
CTAGGTGCTGGGCTCCCAGCTAGATGCAACTCGCCAGTCCTGCTGATTACTGCTTCTGGTGTTC
CTGATGGTGACTTCCAACACGGTCGTCCAGCCTTCCATCCCCCCAGCAAAGAACCTTCTGGTTA
CTCTGTGGCCTTAGGACCCAACCCTAGGAGCCTCTGCTGTCTGAATCCTCCTCTGTCCATCCCC
AGAGCACAGCCTCCTCAGGGAAGCTCTCCAGTCAACAGGCACAGGTCCTTCTTTGGAGGACCCA
CAGGGCTCTGGCTATGAGCAGGGGGTCTGCTGGAGGACACTCTGATCCAGGGGGCCCTGATTAG
CCCATGGGTGTGCAAAGTGTTTCAGCACGTGTATTTCAGCACGGGCTGTGGGTGGGCGCTCTAC
TGCACAGCTCTAGTGTCTTTATGACCCTGTTCCCCATTTTCCCCGTGTTCCCTCTCTCACATGC
TGGAGACTAAACTGTGAGCCCAGAAGGAAATATTTCCATTAAGAGTTGTACAGGCTGCAGGGGC
AGAGCACGGCAGCTGGGGACTGAATCTTGGCCTTTGGAACCAGGTTGCTATAAACGTGCAACTG
TGCCAGGCCCTGGGGATTTGGGTCTCTCTCTGCCTCTCCAATCTCCTTCCAGACTCACCAGGCT
GTTACTCAGCTGTGGGAGAAGCTGCTGTCCCTGTGAGAGAGCTGCTGGGGGGTGGGGTTGGGGG
AGCTGGCATTGAGGGGCCATTGAGAGAAAGCATTTTGACATTTAACAAACACTATGCAAATTGC
ATGCAAATCACCACTCATTCCTTAAGGCAGACGGACAACCTTAGCGTGTTCAGAAATAATAATG
TAGGGCCTGTCCCTTGGTCCCCATCTTGGCGGGCTTTCCTCTCCCTTCCCTCCTTCCCTCCCTC
CCTTTGCTCCCTCCTTCCCTCCCTCCCTTCCCTTCTTTGATCCAAGACCTCCTAGCCCTGAAGT
GGATGTAAAACAGCCCAATTGGCTGCCTGCACCCTGTTTTCCAGACCAGAGAACCGAGGCCGGA
GGTCCCAGAGCCACAGTGTGGAAAGCATGTGCCCCTCCCCAACAGCCCAGGGGAGCTGTGGGGT
CAAAGGTCAGGCTGCTGAGCATGGGCCACCCACAAGCTCACCCTGTTCTCTGCATCCTGAAATC
TCCCTGAATTTTGGCCACAGGCCCATCAGTTTTTTTTCCACCCCACCCTTTTATTGTTTTTTTA
TAAACTCCTATTTATTCTACAAAAGCCTACCTTCAGTGCCCCATTTATACACAACCATTCCTTA
GACTCCAGTAGTAGCCTCCAGTTTTCCAGGCTCCTGCTATCTATTCCAGCACTATGCTCCTGTC
TTAGGCCTGAGTCATGAACCCAGGTTAGGTTTGAGGTTCTTCCCTCTCTGTGAACTCAGTTCAG
AAGACCCCAGGTCATTCATTACTCTGGGCTCTAGGTACAGAGGTGCCACTTTTGAATGTGTATC
AAATAAAAGACTGAAAACAGCAGG

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Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:9685200	AgrOrtholog
BioCyc Gene	G2FUF-28526	BioCyc
NCBI Gene	LOC104940696	ENTREZGENE
PhenoGen	Tincr	PhenoGen
RNAcentral	URS00007E388B	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-31	Tincr	TINCR ubiquitin domain containing	Tincr	tissue differentiation-inducing non-protein coding RNA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-23	Tincr	tissue differentiation-inducing non-protein coding RNA	LOC104940696	tissue differentiation-inducing non-protein coding RNA-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-12-23	LOC104940696	tissue differentiation-inducing non-protein coding RNA-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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