Tmsb4x (thymosin beta 4, X-linked) - Rat Genome Database

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Gene: Tmsb4x (thymosin beta 4, X-linked) Rattus norvegicus
Analyze
Symbol: Tmsb4x
Name: thymosin beta 4, X-linked
RGD ID: 621622
Description: Predicted to enable actin monomer binding activity; enzyme binding activity; and protein sequestering activity. Involved in osteoblast differentiation. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Orthologous to human TMSB4X (thymosin beta 4 X-linked); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: t beta 4; thymosin beta-4; thymosin, beta 4; thymosin, beta 4, X chromosome
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X30,761,611 - 30,763,612 (+)NCBIGRCr8
mRatBN7.2X27,144,666 - 27,146,667 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,260,023 - 47,260,175 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX27,128,610 - 27,146,667 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX28,217,413 - 28,219,416 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X31,619,373 - 31,621,374 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X27,832,051 - 27,834,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X28,593,405 - 28,617,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX28,593,405 - 28,595,395 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X28,985,080 - 28,987,070 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1559,582,271 - 59,582,388 (-)NCBI
CeleraX27,555,904 - 27,557,894 (+)NCBICelera
Cytogenetic MapXq13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmsb4xRatautistic disorder  ISOTMSB4X (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Tmsb4xRatJoubert syndrome 1  ISOTMSB4X (Homo sapiens)8554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:11349230 more ...
Tmsb4xRatNeurodevelopmental Disorders  ISOTMSB4X (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmsb4xRatamyotrophic lateral sclerosis type 1  ISOTMSB4X (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11796754
Tmsb4xRatProstatic Neoplasms  ISOTMSB4X (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17916567

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmsb4xRat(-)-alpha-phellandrene increases expressionISOTMSB4X (Homo sapiens)6480464alpha phellandrene results in increased expression of TMSB4X mRNACTDPMID:25075043
Tmsb4xRat(1->4)-beta-D-glucan multiple interactionsISOTmsb4x (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of TMSB4X mRNACTDPMID:36331819
Tmsb4xRat1,2-dichloroethane decreases expressionISOTmsb4x (Mus musculus)6480464ethylene dichloride results in decreased expression of TMSB4X mRNACTDPMID:28960355
Tmsb4xRat1,2-dimethylhydrazine decreases expressionISOTmsb4x (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of TMSB4X mRNACTDPMID:22206623
Tmsb4xRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of TMSB4X mRNACTDPMID:17557909
Tmsb4xRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of TMSB4X mRNACTDPMID:26496021
Tmsb4xRat17beta-estradiol decreases expressionISOTmsb4x (Mus musculus)6480464Estradiol results in decreased expression of TMSB4X mRNACTDPMID:39298647
Tmsb4xRat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISOTMSB4X (Homo sapiens)6480464bicalutamide inhibits the reaction [Dihydrotestosterone results in decreased expression of TMSB4X mRNA]CTDPMID:17916567
Tmsb4xRat17beta-hydroxy-5alpha-androstan-3-one decreases expressionISOTMSB4X (Homo sapiens)6480464Dihydrotestosterone results in decreased expression of TMSB4X mRNACTDPMID:17916567
Tmsb4xRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of TMSB4X mRNACTDPMID:34747641
Tmsb4xRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOTmsb4x (Mus musculus)64804642 more ...CTDPMID:38648751
Tmsb4xRat2,6-dimethoxyphenol multiple interactionsISOTMSB4X (Homo sapiens)6480464[Furaldehyde co-treated with pyrogallol 1 more ...CTDPMID:38598786
Tmsb4xRat2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one decreases expressionISOTmsb4x (Mus musculus)6480464Itraconazole results in decreased expression of TMSB4X mRNACTDPMID:31099283
Tmsb4xRat4,4'-sulfonyldiphenol decreases expressionISOTmsb4x (Mus musculus)6480464bisphenol S results in decreased expression of TMSB4X mRNACTDPMID:39298647
Tmsb4xRat4-hydroxyphenyl retinamide increases expressionISOTmsb4x (Mus musculus)6480464Fenretinide results in increased expression of TMSB4X mRNACTDPMID:28973697
Tmsb4xRat4-hydroxyphenyl retinamide decreases expressionISOTmsb4x (Mus musculus)6480464Fenretinide results in decreased expression of TMSB4X mRNACTDPMID:28973697
Tmsb4xRat5-aza-2'-deoxycytidine affects methylationISOTMSB4X (Homo sapiens)6480464Decitabine affects the methylation of TMSB4X geneCTDPMID:17630775
Tmsb4xRat5-fluorouracil increases expressionISOTMSB4X (Homo sapiens)6480464Fluorouracil results in increased expression of TMSB4X mRNACTDPMID:15152939
Tmsb4xRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of TMSB4X mRNACTDPMID:24780913 and PMID:30047161
Tmsb4xRatacetylsalicylic acid increases expressionISOTMSB4X (Homo sapiens)6480464Aspirin results in increased expression of TMSB4X mRNACTDPMID:15928584

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Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmsb4xRatactin filament organization involved_inIEAInterPro:IPR0011521600115GO_REF:0000002InterProGO_REF:0000002
Tmsb4xRatactin filament organization involved_inIEAUniRule:UR0009547541600115GO_REF:0000104UniProtGO_REF:0000104
Tmsb4xRatnegative regulation of actin filament polymerization involved_inISOTMSB4X (Homo sapiens)1624291 PMID:1447300 and PMID:1999398RGDPMID:1447300 and PMID:1999398
Tmsb4xRatnegative regulation of canonical NF-kappaB signal transduction acts_upstream_of_or_within_positive_effectISOTMSB4X (Homo sapiens)1624291 PMID:21343177RGDPMID:21343177
Tmsb4xRatnegative regulation of hematopoietic stem cell differentiation involved_inISOTMSB4X (Homo sapiens) and UniProtKB:P62328-PRO_00000342951624291 PMID:7694679RGDPMID:7694679
Tmsb4xRatnegative regulation of inflammatory response involved_inISOTMSB4X (Homo sapiens)1624291 PMID:21343177RGDPMID:21343177
Tmsb4xRatosteoblast differentiation  IEP 729958 RGD 
Tmsb4xRatpositive regulation of ATP biosynthetic process involved_inISOTMSB4X (Homo sapiens)1624291 PMID:21106936RGDPMID:21106936
Tmsb4xRatpositive regulation of blood vessel endothelial cell migration involved_inISOTMSB4X (Homo sapiens)1624291UniProtKB:P00747-PRO_0000028057 more ...RGDPMID:21106936
Tmsb4xRatpositive regulation of endothelial cell chemotaxis involved_inISOTMSB4X (Homo sapiens)1624291 PMID:21106936RGDPMID:21106936
Tmsb4xRatpositive regulation of proton-transporting ATP synthase activity, rotational mechanism involved_inISOTMSB4X (Homo sapiens)1624291 PMID:21106936RGDPMID:21106936
Tmsb4xRatregulation of cell migration involved_inIBAMGI:99510 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tmsb4xRatregulation of cell migration acts_upstream_of_or_withinISOTmsb4x (Mus musculus)1624291 PMID:15565145RGDPMID:15565145
Tmsb4xRattumor necrosis factor-mediated signaling pathway acts_upstream_of_or_within_positive_effectISOTMSB4X (Homo sapiens)1624291 PMID:21343177RGDPMID:21343177
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmsb4xRatcytoplasm part_ofISOTMSB4X (Sus scrofa)1624291 PMID:15466884RGDPMID:15466884
Tmsb4xRatcytoplasm is_active_inIBAMGI:99510 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Tmsb4xRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Tmsb4xRatcytoplasm located_inISOTMSB4X (Homo sapiens)1624291 PMID:21343177RGDPMID:21343177
Tmsb4xRatcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
Tmsb4xRatcytoskeleton located_inIEAUniRule:UR0009547541600115GO_REF:0000104UniProtGO_REF:0000104
Tmsb4xRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Tmsb4xRatcytosol located_inISOTMSB4X (Homo sapiens)1624291 PMID:1447300RGDPMID:1447300
Tmsb4xRatcytosol located_inISOTmsb4x (Mus musculus)1624291 PMID:15565145RGDPMID:15565145
Tmsb4xRatnucleus part_ofISOTMSB4X (Sus scrofa)1624291 PMID:15466884RGDPMID:15466884
Tmsb4xRatnucleus located_inISOTmsb4x (Mus musculus)1624291 PMID:15565145RGDPMID:15565145
Tmsb4xRatnucleus located_inISOTMSB4X (Homo sapiens)1624291 PMID:21343177RGDPMID:21343177
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Molecular Function
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#
Reference Title
Reference Citation
1. Differential expression of thymosins beta(4) and beta(10) during rat cerebellum postnatal development. Anadon R, etal., Brain Res 2001 Mar 16;894(2):255-65.
2. Thymosin beta 4 is expressed in ROS 17/2.8 osteosarcoma cells in a regulated manner. Atkinson MJ, etal., Mol Endocrinol 1990 Jan;4(1):69-74.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Sequence of a cloned 523-bp cDNA for thymosin beta 4. Goodall GJ, etal., Arch Biochem Biophys 1985 Jan;236(1):445-7.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Cloning and sequence analysis of cDNA for rat spleen thymosin beta 4. Wodnar-Filipowicz A, etal., Proc Natl Acad Sci U S A 1984 Apr;81(8):2295-7.
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PMID:1447300   PMID:1999398   PMID:3670309   PMID:6954532   PMID:12477932   PMID:14657002   PMID:15466884   PMID:15565145   PMID:16189468   PMID:16641100   PMID:17716628   PMID:20809981  
PMID:21106936   PMID:21332672   PMID:21343177   PMID:22046407   PMID:22658674   PMID:23073962   PMID:23807296   PMID:24006456   PMID:24039044   PMID:24828499   PMID:26457369   PMID:27068509  
PMID:29956769   PMID:31054361   PMID:35979771  



Tmsb4x
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X30,761,611 - 30,763,612 (+)NCBIGRCr8
mRatBN7.2X27,144,666 - 27,146,667 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,260,023 - 47,260,175 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX27,128,610 - 27,146,667 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX28,217,413 - 28,219,416 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X31,619,373 - 31,621,374 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X27,832,051 - 27,834,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X28,593,405 - 28,617,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX28,593,405 - 28,595,395 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X28,985,080 - 28,987,070 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1559,582,271 - 59,582,388 (-)NCBI
CeleraX27,555,904 - 27,557,894 (+)NCBICelera
Cytogenetic MapXq13NCBI
TMSB4X
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X12,975,110 - 12,977,223 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX12,975,110 - 12,977,227 (+)EnsemblGRCh38hg38GRCh38
GRCh37X12,993,229 - 12,995,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X12,903,148 - 12,905,267 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X12,752,883 - 12,755,002NCBI
CeleraX17,110,896 - 17,113,015 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX10,756,223 - 10,758,343 (+)NCBIHuRef
CHM1_1X13,023,770 - 13,025,890 (+)NCBICHM1_1
T2T-CHM13v2.0X12,556,537 - 12,558,650 (+)NCBIT2T-CHM13v2.0
Tmsb4x
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,990,089 - 165,996,475 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,990,089 - 165,992,311 (-)EnsemblGRCm39 Ensembl
GRCm38X167,207,093 - 167,213,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX167,207,093 - 167,209,315 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X163,645,026 - 163,647,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X144,389,562 - 144,391,688 (-)NCBIMGSCv36mm8
MGSCv36X162,551,199 - 162,553,323 (-)NCBIMGSCv36mm8
CeleraX150,380,762 - 150,382,939 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX78.28NCBI
Tmsb4x
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955544266,397 - 268,447 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955544266,397 - 268,447 (-)NCBIChiLan1.0ChiLan1.0
TMSB4X
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X14,759,411 - 14,761,586 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X14,763,035 - 14,765,252 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X5,587,242 - 5,589,417 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC100683370
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,127,694 - 21,128,346 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,118,894 - 22,119,534 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,020,853 - 21,021,492 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1121,077,166 - 21,077,806 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0120,969,395 - 20,970,035 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,240,994 - 21,241,634 (-)NCBIUU_Cfam_GSD_1.0
Tmsb4x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X2,668,453 - 2,670,610 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364702,668,016 - 2,670,770 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364702,668,525 - 2,670,611 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMSB4X
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX9,650,179 - 9,651,661 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X9,649,516 - 9,651,662 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X10,549,221 - 10,551,375 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMSB4X
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X11,454,090 - 11,456,268 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605613,239,030 - 13,241,256 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmsb4x
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248821,198,099 - 1,200,201 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248821,198,099 - 1,200,237 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Tmsb4x
30 total Variants

Predicted Target Of
Summary Value
Count of predictions:194
Count of miRNA genes:131
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000071708
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat

1 to 9 of 9 rows
TMSB4X  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X27,146,300 - 27,146,518 (+)MAPPERmRatBN7.2
Rnor_6.0X28,595,029 - 28,595,246NCBIRnor6.0
Rnor_5.0X28,986,704 - 28,986,921UniSTSRnor5.0
CeleraX27,557,528 - 27,557,745UniSTS
Cytogenetic Map5q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 96 rows
RefSeq Transcripts NM_031136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC084720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 96 rows

Ensembl Acc Id: ENSRNOT00000071708   ⟹   ENSRNOP00000066062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX27,128,610 - 27,146,667 (+)Ensembl
Rnor_6.0 EnsemblX28,593,405 - 28,595,395 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000072548   ⟹   ENSRNOP00000065577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1047,260,023 - 47,260,175 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102572   ⟹   ENSRNOP00000097796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX27,144,555 - 27,146,667 (+)Ensembl
RefSeq Acc Id: NM_031136   ⟹   NP_112398
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X30,761,611 - 30,763,612 (+)NCBI
mRatBN7.2X27,144,666 - 27,146,667 (+)NCBI
Rnor_6.0X28,593,405 - 28,617,267 (+)NCBI
Rnor_5.0X28,985,080 - 28,987,070 (+)NCBI
CeleraX27,555,904 - 27,557,894 (+)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_112398 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42062 (Get FASTA)   NCBI Sequence Viewer  
  AAA42245 (Get FASTA)   NCBI Sequence Viewer  
  AAA42246 (Get FASTA)   NCBI Sequence Viewer  
  AAH58137 (Get FASTA)   NCBI Sequence Viewer  
  EDL90565 (Get FASTA)   NCBI Sequence Viewer  
  EDL90566 (Get FASTA)   NCBI Sequence Viewer  
  EDL90567 (Get FASTA)   NCBI Sequence Viewer  
  P62329 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_112398   ⟸   NM_031136
- UniProtKB: Q0P5V6 (UniProtKB/Swiss-Prot),   P62329 (UniProtKB/Swiss-Prot),   M0R7Y9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066062   ⟸   ENSRNOT00000071708
Ensembl Acc Id: ENSRNOP00000097796   ⟸   ENSRNOT00000102572
Ensembl Acc Id: ENSRNOP00000065577   ⟸   ENSRNOT00000072548

Name Modeler Protein Id AA Range Protein Structure
AF-P62329-F1-model_v2 AlphaFold P62329 1-44 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701786
Promoter ID:EPDNEW_R12309
Type:single initiation site
Name:Tmsb4x_1
Description:thymosin beta 4, X-linked
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X28,593,397 - 28,593,457EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-2658 BioCyc
Ensembl Genes ENSRNOG00000046598 Ensembl
  ENSRNOG00000047931 Ensembl
Gene3D-CATH 1.20.5.520 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6889807 IMAGE-MGC_LOAD
InterPro Beta-thymosin UniProtKB/Swiss-Prot
  Beta-thymosin_sf UniProtKB/Swiss-Prot
KEGG Report rno:81814 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72784 IMAGE-MGC_LOAD
NCBI Gene 81814 ENTREZGENE
PANTHER PTHR12021 UniProtKB/Swiss-Prot
  THYMOSIN BETA-4 UniProtKB/Swiss-Prot
Pfam Thymosin UniProtKB/Swiss-Prot
PhenoGen Tmsb4x PhenoGen
PIRSF Thymosin_beta UniProtKB/Swiss-Prot
PROSITE THYMOSIN_B4 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000046598 RatGTEx
  ENSRNOG00000047931 RatGTEx
SMART THY UniProtKB/Swiss-Prot
UniProt A0A8I6AUX5_RAT UniProtKB/TrEMBL
  A0A8L2QYF0_RAT UniProtKB/TrEMBL
  A6K2G3_RAT UniProtKB/TrEMBL
  A6K2G4_RAT UniProtKB/TrEMBL
  M0R7Y9 ENTREZGENE, UniProtKB/TrEMBL
  P62329 ENTREZGENE
  Q0P5V6 ENTREZGENE
  TYB4_RAT UniProtKB/Swiss-Prot
UniProt Secondary P01253 UniProtKB/Swiss-Prot
  P01254 UniProtKB/Swiss-Prot
  Q0P5V6 UniProtKB/Swiss-Prot
  Q63576 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-31 Tmsb4x  thymosin beta 4, X-linked  Tmsb4x  thymosin, beta 4, X chromosome  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Tmsb4x  thymosin, beta 4, X chromosome  Tmsb4x  thymosin beta 4, X-linked  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-14 Tmsb4x  thymosin beta 4, X-linked  Tmsb4x  thymosin, beta 4, X chromosome  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Tmsb4x  thymosin, beta 4, X chromosome  Tmsb4x  thymosin, beta 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Tmsb4x  thymosin, beta 4    thymosin beta-4  Name updated 1299863 APPROVED
2002-08-07 Tmsb4x  thymosin beta-4      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_product member of the beta-thymosin family of actin monomer-sequestering proteins 737835