Clstn2 (calsyntenin 2) - Rat Genome Database

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Gene: Clstn2 (calsyntenin 2) Rattus norvegicus
Analyze
Symbol: Clstn2
Name: calsyntenin 2
RGD ID: 621151
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in several processes, including associative learning; inhibitory synapse assembly; and positive regulation of synapse assembly. Located in postsynaptic membrane. Orthologous to human CLSTN2 (calsyntenin 2); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alc-gamma; alcadein-gamma; calsyntenin-2; Cs2; Cstn2; LOC100359585
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,899,894 - 107,516,402 (-)NCBIGRCr8
mRatBN7.2898,020,406 - 98,637,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl898,021,666 - 98,637,731 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8103,694,012 - 104,302,007 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,893,277 - 102,501,280 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0899,732,207 - 100,340,217 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08105,322,577 - 106,036,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8105,323,837 - 105,462,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,768,386 - 104,906,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48102,614,117 - 103,214,037 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18102,633,571 - 103,233,492 (-)NCBI
Celera897,454,425 - 98,063,036 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Clstn2RatLiver Neoplasms  ISORGD:135012311554173CTD Direct Evidence: marker/mechanismCTDPMID:19233941

1 to 20 of 91 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Clstn2Rat1,2-dichloroethane decreases expressionISORGD:7327016480464ethylene dichloride results in decreased expression of CLSTN2 mRNACTDPMID:28960355
Clstn2Rat1,2-dimethylhydrazine increases expressionISORGD:73270164804641,2-Dimethylhydrazine results in increased expression of CLSTN2 mRNACTDPMID:22206623
Clstn2Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of CLSTN2 mRNACTDPMID:20068009
Clstn2Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of CLSTN2 mRNACTDPMID:17010207
Clstn2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:7327016480464[Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in decreased methylation of CLSTN2 geneCTDPMID:21212295
Clstn2Rat2,3,7,8-tetrachlorodibenzodioxine decreases methylationISORGD:7327016480464Tetrachlorodibenzodioxin results in decreased methylation of CLSTN2 geneCTDPMID:21212295
Clstn2Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISORGD:135012364804642,2',4,4',5-brominated diphenyl ether results in increased expression of CLSTN2 mRNACTDPMID:26705709
Clstn2Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORGD:13501236480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...CTDPMID:28628672
Clstn2Rat4,4'-diaminodiphenylmethane decreases expressionISORGD:73270164804644,4'-diaminodiphenylmethane results in decreased expression of CLSTN2 mRNACTDPMID:18648102
Clstn2Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of CLSTN2 mRNACTDPMID:24780913
Clstn2Rataflatoxin B1 decreases methylationISORGD:13501236480464Aflatoxin B1 results in decreased methylation of CLSTN2 geneCTDPMID:27153756
Clstn2Rataflatoxin B1 increases methylationISORGD:13501236480464Aflatoxin B1 results in increased methylation of CLSTN2 exonCTDPMID:30157460
Clstn2Rataristolochic acid A decreases expressionISORGD:13501236480464aristolochic acid I results in decreased expression of CLSTN2 mRNACTDPMID:33212167
Clstn2Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of CLSTN2 geneCTDPMID:35440735
Clstn2Ratbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of CLSTN2 mRNACTDPMID:21839799
Clstn2Ratbenzo[a]pyrene increases methylationISORGD:7327016480464Benzo(a)pyrene results in increased methylation of CLSTN2 intronCTDPMID:27901495
Clstn2Ratbenzo[a]pyrene increases methylationISORGD:13501236480464Benzo(a)pyrene results in increased methylation of CLSTN2 exon; Benzo(a)pyrene results in increased methylation of CLSTN2 more ...CTDPMID:27901495
Clstn2Ratbenzo[a]pyrene multiple interactionsISORGD:7327016480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in increased expression of more ...CTDPMID:27858113
Clstn2Ratbenzo[b]fluoranthene multiple interactionsISORGD:7327016480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in increased expression of more ...CTDPMID:27858113
Clstn2Ratbenzo[e]pyrene increases methylationISORGD:13501236480464benzo(e)pyrene results in increased methylation of CLSTN2 exonCTDPMID:30157460

1 to 20 of 91 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Clstn2Ratassociative learning involved_inISORGD:7327011624291 PMID:26171716RGDPMID:26171716
Clstn2Ratassociative learning involved_inIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
Clstn2Ratchemical synaptic transmission  NAS 632523 RGD 
Clstn2Rathomophilic cell adhesion via plasma membrane adhesion molecules involved_inIEAInterPro:IPR0021261600115GO_REF:0000002InterProGO_REF:0000002
Clstn2Ratinhibitory synapse assembly involved_inISORGD:7327011624291 PMID:26171716RGDPMID:26171716
Clstn2Ratinhibitory synapse assembly involved_inIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratpositive regulation of synapse assembly acts_upstream_of_or_withinIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratpositive regulation of synapse assembly acts_upstream_of_or_withinISORGD:7327011624291MGI:1929895|MGI:2178323 PMID:24613359RGDPMID:24613359
Clstn2Ratpositive regulation of synapse assembly involved_inIBAMGI:1929895|MGI:1929897|MGI:2178323|PANTHER:PTN0010204501600115GO_REF:0000033GO_CentralGO_REF:0000033
Clstn2Ratpositive regulation of synaptic transmission acts_upstream_of_or_withinIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratpositive regulation of synaptic transmission acts_upstream_of_or_withinISORGD:7327011624291MGI:1929895|MGI:2178323 PMID:24613359RGDPMID:24613359
Clstn2Ratpositive regulation of synaptic transmission involved_inIBAMGI:1929895|MGI:1929897|MGI:2178323|PANTHER:PTN0010204501600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 13 of 13 rows

Cellular Component
1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Clstn2Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Clstn2Ratcell surface located_inIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratcell surface located_inISORGD:7327011624291 PMID:24613359RGDPMID:24613359
Clstn2Ratcell surface is_active_inIBAMGI:1929895|MGI:1929897|MGI:2178323|PANTHER:PTN0010204501600115GO_REF:0000033GO_CentralGO_REF:0000033
Clstn2Ratdendrite located_inIEAUniProtKB-SubCell:SL-02831600115GO_REF:0000044UniProtGO_REF:0000044
Clstn2Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Clstn2Ratendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-00971600115GO_REF:0000044UniProtGO_REF:0000044
Clstn2Ratglutamatergic synapse is_active_inISORGD:7327011624291 PMID:12498782RGDPMID:12498782
Clstn2Ratglutamatergic synapse is_active_inIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2RatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
Clstn2RatGolgi membrane located_inIEAUniProtKB-SubCell:SL-01341600115GO_REF:0000044UniProtGO_REF:0000044
Clstn2Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Clstn2Ratmembrane located_inIEAInterPro:IPR002126|InterPro:IPR0159191600115GO_REF:0000002InterProGO_REF:0000002
Clstn2Ratneuron projection located_inIEAUniProtKB-SubCell:SL-05181600115GO_REF:0000044UniProtGO_REF:0000044
Clstn2Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Clstn2Ratpostsynaptic density located_inISORGD:7327011624291 PMID:24613359RGDPMID:24613359
Clstn2Ratpostsynaptic density located_inIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratpostsynaptic density membrane is_active_inIEAUniProtKB:Q9ER65|ensembl:ENSMUSP000001240811600115GO_REF:0000107EnsemblGO_REF:0000107
Clstn2Ratpostsynaptic density membrane is_active_inISORGD:7327011624291 PMID:12498782RGDPMID:12498782
Clstn2Ratpostsynaptic membrane  IDA 632523 RGD 
1 to 20 of 27 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Clstn2Ratcalcium ion binding enablesIEAInterPro:IPR002126|InterPro:IPR0159191600115GO_REF:0000002InterProGO_REF:0000002
Clstn2Ratcalcium ion binding enablesIEAUniRule:UR0004134501600115GO_REF:0000104UniProtGO_REF:0000104


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The calsyntenins--a family of postsynaptic membrane proteins with distinct neuronal expression patterns. Hintsch G, etal., Mol Cell Neurosci 2002 Nov;21(3):393-409.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:24613359  



Clstn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,899,894 - 107,516,402 (-)NCBIGRCr8
mRatBN7.2898,020,406 - 98,637,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl898,021,666 - 98,637,731 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8103,694,012 - 104,302,007 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,893,277 - 102,501,280 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0899,732,207 - 100,340,217 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08105,322,577 - 106,036,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8105,323,837 - 105,462,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,768,386 - 104,906,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48102,614,117 - 103,214,037 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18102,633,571 - 103,233,492 (-)NCBI
Celera897,454,425 - 98,063,036 (-)NCBICelera
Cytogenetic Map8q31NCBI
CLSTN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383139,935,185 - 140,577,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3139,935,185 - 140,577,397 (+)EnsemblGRCh38hg38GRCh38
GRCh373139,654,027 - 140,296,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363141,136,897 - 141,769,328 (+)NCBINCBI36Build 36hg18NCBI36
Build 343141,136,904 - 141,769,328NCBI
Celera3138,076,932 - 138,710,571 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3137,029,438 - 137,660,865 (+)NCBIHuRef
CHM1_13139,617,396 - 140,250,542 (+)NCBICHM1_1
T2T-CHM13v2.03142,682,539 - 143,324,729 (+)NCBIT2T-CHM13v2.0
Clstn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39997,326,448 - 97,915,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl997,326,448 - 97,915,234 (-)EnsemblGRCm39 Ensembl
GRCm38997,444,395 - 98,033,373 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl997,444,395 - 98,033,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv37997,344,814 - 97,933,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36997,253,747 - 97,842,519 (-)NCBIMGSCv36mm8
Celera996,998,129 - 97,587,251 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.06NCBI
Clstn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555085,074,466 - 5,655,884 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555085,069,872 - 5,656,621 (-)NCBIChiLan1.0ChiLan1.0
CLSTN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,848,569 - 138,489,242 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13137,853,291 - 138,493,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03136,971,615 - 137,612,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13144,571,574 - 145,201,588 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3144,571,706 - 145,199,768 (+)Ensemblpanpan1.1panPan2
CLSTN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12336,029,356 - 36,645,614 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2336,029,371 - 36,635,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2336,142,872 - 36,639,373 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02336,693,005 - 37,166,674 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2336,566,381 - 37,166,639 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12336,374,497 - 36,857,999 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02336,448,350 - 36,932,034 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02336,690,788 - 37,174,298 (+)NCBIUU_Cfam_GSD_1.0
Clstn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560275,254,295 - 75,835,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,994,986 - 2,574,069 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,994,078 - 2,569,224 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLSTN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1380,789,195 - 81,450,657 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11380,789,239 - 81,461,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,148,892 - 89,296,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLSTN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,996,144 - 50,622,454 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,999,908 - 50,151,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604122,955,556 - 23,588,228 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clstn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473016,568,556 - 17,176,251 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473016,568,556 - 17,187,365 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Clstn2
3309 total Variants


Assembly: mRatBN7.2
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 98158739 98158740 G A snv GK/FarMcwi (2019), European Variation Archive Release 3, GK/FarMcwi (2019NG), European Variation Archive Release 6, European Variation Archive Release 4 View more Information


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
8 105460919 105460920 G A snv GK/FarMcwi (2019), GK/Ox (RGD) View more Information

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:29
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000066731
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat

1 to 10 of 44 rows
D8Rat128  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88107,195,614 - 107,195,774 (+)Marker Load Pipeline
mRatBN7.2898,316,156 - 98,316,316 (+)MAPPERmRatBN7.2
Rnor_6.08105,697,532 - 105,697,691NCBIRnor6.0
Rnor_5.08105,141,903 - 105,142,062UniSTSRnor5.0
RGSC_v3.48102,883,463 - 102,883,622UniSTSRGSC3.4
RGSC_v3.48102,883,462 - 102,883,622RGDRGSC3.4
RGSC_v3.18102,902,666 - 102,903,146RGD
Celera897,741,865 - 97,742,024UniSTS
SHRSP x BN Map860.6299UniSTS
SHRSP x BN Map860.6299RGD
Cytogenetic Map8q31UniSTS
D8Rat127  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88107,154,907 - 107,155,081 (+)Marker Load Pipeline
mRatBN7.2898,275,437 - 98,275,613 (+)MAPPERmRatBN7.2
Rnor_6.08105,577,600 - 105,577,773NCBIRnor6.0
Rnor_5.08105,021,971 - 105,022,144UniSTSRnor5.0
RGSC_v3.48102,844,445 - 102,844,618UniSTSRGSC3.4
RGSC_v3.48102,844,444 - 102,844,618RGDRGSC3.4
RGSC_v3.18102,863,887 - 102,864,215RGD
Celera897,708,158 - 97,708,331UniSTS
SHRSP x BN Map860.6299UniSTS
SHRSP x BN Map860.6299RGD
Cytogenetic Map8q31UniSTS
D8Got157  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88106,909,397 - 106,909,617 (+)Marker Load Pipeline
mRatBN7.2898,029,909 - 98,030,129 (+)MAPPERmRatBN7.2
Rnor_6.08105,332,083 - 105,332,302NCBIRnor6.0
Rnor_5.08104,776,632 - 104,776,851UniSTSRnor5.0
RGSC_v3.48102,338,935 - 102,339,155RGDRGSC3.4
RGSC_v3.48102,338,936 - 102,339,155UniSTSRGSC3.4
RGSC_v3.18102,358,391 - 102,358,610RGD
Celera897,462,669 - 97,462,888UniSTS
RH 3.4 Map81077.59UniSTS
RH 3.4 Map81077.59RGD
RH 2.0 Map8859.9RGD
Cytogenetic Map8q31UniSTS
BI301360  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2898,453,829 - 98,453,982 (+)MAPPERmRatBN7.2
Rnor_6.08105,834,795 - 105,834,947NCBIRnor6.0
Rnor_5.08105,278,991 - 105,279,143UniSTSRnor5.0
RGSC_v3.48103,020,934 - 103,021,086UniSTSRGSC3.4
Celera897,879,580 - 97,879,732UniSTS
RH 3.4 Map81051.29UniSTS
Cytogenetic Map8q31UniSTS
BE097605  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2898,024,570 - 98,024,726 (+)MAPPERmRatBN7.2
Rnor_6.08105,326,742 - 105,326,897NCBIRnor6.0
Rnor_5.08104,771,291 - 104,771,446UniSTSRnor5.0
RGSC_v3.48102,344,344 - 102,344,499UniSTSRGSC3.4
Celera897,457,330 - 97,457,485UniSTS
RH 3.4 Map81080.3UniSTS
Cytogenetic Map8q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 65 64 35 22 35 6 191 94 93 45 60 29


RefSeq Transcripts NM_134377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ427342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066731   ⟹   ENSRNOP00000060748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl898,021,666 - 98,637,731 (-)Ensembl
Rnor_6.0 Ensembl8105,323,859 - 105,462,141 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078760   ⟹   ENSRNOP00000070212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl898,021,666 - 98,160,567 (-)Ensembl
Rnor_6.0 Ensembl8105,323,837 - 105,462,168 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118831   ⟹   ENSRNOP00000077209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl898,029,699 - 98,637,731 (-)Ensembl
RefSeq Acc Id: NM_134377   ⟹   NP_599204
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88106,899,894 - 107,516,402 (-)NCBI
mRatBN7.2898,020,406 - 98,637,001 (-)NCBI
Rnor_6.08105,323,837 - 106,036,695 (-)NCBI
Rnor_5.08104,768,386 - 104,906,597 (-)NCBI
RGSC_v3.48102,614,117 - 103,214,037 (-)RGD
Celera897,454,425 - 98,063,036 (-)RGD
Sequence:
Protein RefSeqs NP_599204 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD20352 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070212
GenBank Protein Q8VDA1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_599204   ⟸   NM_134377
- Peptide Label: precursor
- UniProtKB: Q8VDA1 (UniProtKB/Swiss-Prot),   F1LMG0 (UniProtKB/TrEMBL),   A6I2A5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070212   ⟸   ENSRNOT00000078760
Ensembl Acc Id: ENSRNOP00000060748   ⟸   ENSRNOT00000066731
Ensembl Acc Id: ENSRNOP00000077209   ⟸   ENSRNOT00000118831
Cadherin

Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDA1-F1-model_v2 AlphaFold Q8VDA1 1-965 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29422 BioCyc
Ensembl Genes ENSRNOG00000043085 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000078760 ENTREZGENE
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot
  Cadherins UniProtKB/Swiss-Prot
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  CLSTN_C UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:171394 UniProtKB/Swiss-Prot
NCBI Gene 171394 ENTREZGENE
PANTHER CALSYNTENIN-2 UniProtKB/Swiss-Prot
  PTHR14139 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  CLSTN_C UniProtKB/Swiss-Prot
PhenoGen Clstn2 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000043085 RatGTEx
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot
UniProt A0A0G2JXB8_RAT UniProtKB/TrEMBL
  A0A8I5XVW9_RAT UniProtKB/TrEMBL
  A6I2A5 ENTREZGENE, UniProtKB/TrEMBL
  CSTN2_RAT UniProtKB/Swiss-Prot
  F1LMG0 ENTREZGENE, UniProtKB/TrEMBL
  Q8VDA1 ENTREZGENE
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-17 Clstn2  calsyntenin 2  LOC100359585  calsyntenin 2  Data merged from RGD:2323609 737654 PROVISIONAL
2010-05-06 LOC100359585  calsyntenin 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Clstn2  calsyntenin 2  Cstn2    Symbol updated 1299863 APPROVED
2002-08-07 Cstn2  calsyntenin 2      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in excitatory central nervous system (CNS) synapses 632523