Clstn2 (calsyntenin 2) - Rat Genome Database

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Gene: Clstn2 (calsyntenin 2) Ictidomys tridecemlineatus
Analyze
Symbol: Clstn2
Name: calsyntenin 2
RGD ID: 12689198
Description: ENCODES a protein that exhibits amyloid-beta binding (inferred); calcium ion binding (inferred); kinesin binding (inferred); INVOLVED IN positive regulation of synapse assembly (ortholog); positive regulation of synaptic transmission (ortholog); ASSOCIATED WITH genetic disease (ortholog); Liver Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calsyntenin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560275,254,295 - 75,835,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,994,986 - 2,574,069 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,994,078 - 2,569,224 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Clstn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560275,254,295 - 75,835,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365401,994,986 - 2,574,069 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365401,994,078 - 2,569,224 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLSTN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383139,935,185 - 140,577,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3139,935,185 - 140,577,397 (+)EnsemblGRCh38hg38GRCh38
GRCh373139,654,027 - 140,296,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363141,136,897 - 141,769,328 (+)NCBINCBI36Build 36hg18NCBI36
Build 343141,136,904 - 141,769,328NCBI
Celera3138,076,932 - 138,710,571 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3137,029,438 - 137,660,865 (+)NCBIHuRef
CHM1_13139,617,396 - 140,250,542 (+)NCBICHM1_1
T2T-CHM13v2.03142,682,539 - 143,324,729 (+)NCBIT2T-CHM13v2.0
Clstn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39997,326,448 - 97,915,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl997,326,448 - 97,915,234 (-)EnsemblGRCm39 Ensembl
GRCm38997,444,395 - 98,033,373 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl997,444,395 - 98,033,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv37997,344,814 - 97,933,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36997,253,747 - 97,842,519 (-)NCBIMGSCv36mm8
Celera996,998,129 - 97,587,251 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.06NCBI
Clstn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,899,894 - 107,516,402 (-)NCBIGRCr8
mRatBN7.2898,020,406 - 98,637,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl898,021,666 - 98,637,731 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8103,694,012 - 104,302,007 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,893,277 - 102,501,280 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0899,732,207 - 100,340,217 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08105,322,577 - 106,036,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8105,323,837 - 105,462,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,768,386 - 104,906,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48102,614,117 - 103,214,037 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18102,633,571 - 103,233,492 (-)NCBI
Celera897,454,425 - 98,063,036 (-)NCBICelera
Cytogenetic Map8q31NCBI
Clstn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555085,074,466 - 5,655,884 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555085,069,872 - 5,656,621 (-)NCBIChiLan1.0ChiLan1.0
CLSTN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,848,569 - 138,489,242 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13137,853,291 - 138,493,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03136,971,615 - 137,612,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13144,571,574 - 145,201,588 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3144,571,706 - 145,199,768 (+)Ensemblpanpan1.1panPan2
CLSTN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12336,029,356 - 36,645,614 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2336,029,371 - 36,635,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2336,142,872 - 36,639,373 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02336,693,005 - 37,166,674 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2336,566,381 - 37,166,639 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12336,374,497 - 36,857,999 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02336,448,350 - 36,932,034 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02336,690,788 - 37,174,298 (+)NCBIUU_Cfam_GSD_1.0
CLSTN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1380,789,195 - 81,450,657 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11380,789,239 - 81,461,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,148,892 - 89,296,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLSTN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,996,144 - 50,622,454 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,999,908 - 50,151,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604122,955,556 - 23,588,228 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clstn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473016,568,556 - 17,176,251 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473016,568,556 - 17,187,365 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021728308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000002013   ⟹   ENSSTOP00000001793
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365401,994,986 - 2,574,069 (+)Ensembl
RefSeq Acc Id: XM_021728308   ⟹   XP_021583983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560275,254,295 - 75,835,456 (+)NCBI
SpeTri2.0NW_0049365401,994,078 - 2,569,224 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021583983 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001793.3
GenBank Protein KAG3270751 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021583983   ⟸   XM_021728308
- UniProtKB: I3LZL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000001793   ⟸   ENSSTOT00000002013
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002012 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002013.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Calsyntenin UniProtKB/TrEMBL
  CLSTN_C UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Clstn2 ENTREZGENE
PANTHER CALSYNTENIN-2 UniProtKB/TrEMBL
  PTHR14139 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  CLSTN_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt I3LZL8 ENTREZGENE, UniProtKB/TrEMBL