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Gene: Strbp (spermatid perinuclear RNA binding protein) Rattus norvegicus

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Symbol:

Strbp

Name:

spermatid perinuclear RNA binding protein

RGD ID:

620673

Description:

Predicted to enable double-stranded RNA binding activity; microtubule binding activity; and single-stranded RNA binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Predicted to act upstream of or within cell motility; mechanosensory behavior; and spermatid development. Predicted to be located in manchette and nucleus. Orthologous to human STRBP (spermatid perinuclear RNA binding protein); INTERACTS WITH 2,4-dinitrotoluene; 2,5-hexanedione; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

74 kDa double-stranded RNA-binding protein; double-stranded RNA-binding protein p74; p74; spermatid perinuclear RNA-binding protein; Spnr

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	41,738,096 - 41,879,054 (-)	NCBI		GRCr8
mRatBN7.2	3	21,328,310 - 21,467,753 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	21,337,855 - 21,414,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	24,809,843 - 24,883,207 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	33,394,801 - 33,468,169 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	31,205,741 - 31,279,169 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	21,817,680 - 21,956,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,828,298 - 21,904,270 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	27,058,852 - 27,186,405 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,338,337 - 17,411,975 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	17,235,208 - 17,308,204 (-)	NCBI
Celera	3	19,776,985 - 19,850,280 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Strbp	Rat	Animal Disease Models		ISO	STRBP (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:27602772
Strbp	Rat	lung adenocarcinoma		ISO	STRBP (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:27602772

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Strbp	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of STRBP mRNA	CTD	PMID:36331819
Strbp	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Strbp (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of STRBP mRNA	CTD	PMID:22206623
Strbp	Rat	17beta-estradiol	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	[Estradiol co-treated with Progesterone] results in increased expression of STRBP mRNA	CTD	PMID:20660070
Strbp	Rat	17beta-estradiol	increases expression	ISO	Strbp (Mus musculus)	6480464	Estradiol results in increased expression of STRBP mRNA	CTD	PMID:39298647
Strbp	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in decreased expression of STRBP mRNA	CTD	PMID:20106945 and PMID:21632981
Strbp	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Strbp (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of STRBP mRNA	CTD	PMID:21570461 and PMID:26377647
Strbp	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in increased expression of STRBP mRNA	CTD	PMID:25975270
Strbp	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	STRBP (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in increased expression of STRBP mRNA	CTD	PMID:22903824
Strbp	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of STRBP mRNA	CTD	PMID:21346803
Strbp	Rat	2,5-hexanedione	increases expression	EXP		6480464	2 and 5-hexanedione results in increased expression of STRBP mRNA	CTD	PMID:22952946
Strbp	Rat	4,4'-diaminodiphenylmethane	affects expression	ISO	Strbp (Mus musculus)	6480464	4 and 4'-diaminodiphenylmethane affects the expression of STRBP mRNA	CTD	PMID:18648102
Strbp	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Strbp (Mus musculus)	6480464	bisphenol S results in increased expression of STRBP mRNA	CTD	PMID:39298647
Strbp	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Strbp (Mus musculus)	6480464	Fenretinide results in increased expression of STRBP mRNA	CTD	PMID:28973697
Strbp	Rat	aldehydo-D-glucose	decreases expression	ISO	Strbp (Mus musculus)	6480464	Glucose results in decreased expression of STRBP mRNA	CTD	PMID:17178593
Strbp	Rat	ammonium chloride	affects expression	EXP		6480464	Ammonium Chloride affects the expression of STRBP mRNA	CTD	PMID:16483693
Strbp	Rat	antirheumatic drug	increases expression	ISO	STRBP (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of STRBP mRNA	CTD	PMID:24449571
Strbp	Rat	aristolochic acid A	decreases expression	ISO	STRBP (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of STRBP mRNA	CTD	PMID:33212167
Strbp	Rat	Aroclor 1254	decreases expression	ISO	Strbp (Mus musculus)	6480464	Chlorodiphenyl (54% Chlorine) results in decreased expression of STRBP mRNA	CTD	PMID:23650126
Strbp	Rat	arsenous acid	increases expression	ISO	STRBP (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of STRBP mRNA	CTD	PMID:20458559
Strbp	Rat	atrazine	increases expression	ISO	STRBP (Homo sapiens)	6480464	Atrazine results in increased expression of STRBP mRNA	CTD	PMID:22378314
Strbp	Rat	atrazine	affects methylation	EXP		6480464	Atrazine affects the methylation of STRBP gene	CTD	PMID:28931070
Strbp	Rat	benzene	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Benzene results in decreased expression of STRBP mRNA	CTD	PMID:19162166
Strbp	Rat	benzo[e]pyrene	decreases methylation	ISO	STRBP (Homo sapiens)	6480464	benzo(e)pyrene results in decreased methylation of STRBP intron	CTD	PMID:30157460
Strbp	Rat	Benzo[ghi]perylene	increases expression	ISO	Strbp (Mus musculus)	6480464	1 and 12-benzoperylene results in increased expression of STRBP mRNA	CTD	PMID:26377693
Strbp	Rat	bisphenol A	increases expression	ISO	Strbp (Mus musculus)	6480464	bisphenol A results in increased expression of STRBP mRNA	CTD	PMID:26063408
Strbp	Rat	bisphenol A	decreases expression	ISO	STRBP (Homo sapiens)	6480464	bisphenol A results in decreased expression of STRBP protein	CTD	PMID:37567409
Strbp	Rat	bisphenol A	decreases expression	ISO	Strbp (Mus musculus)	6480464	bisphenol A results in decreased expression of STRBP mRNA	CTD	PMID:32156529
Strbp	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of STRBP mRNA	CTD	PMID:30816183 and PMID:34947998
Strbp	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of STRBP mRNA	CTD	PMID:25181051
Strbp	Rat	cadmium dichloride	increases expression	ISO	STRBP (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of STRBP mRNA	CTD	PMID:26472689
Strbp	Rat	cadmium dichloride	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of STRBP mRNA	CTD	PMID:38568856
Strbp	Rat	caffeine	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Caffeine results in decreased expression of STRBP mRNA	CTD	PMID:11793227
Strbp	Rat	carbon nanotube	decreases expression	ISO	Strbp (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Strbp	Rat	carbon nanotube	increases expression	ISO	Strbp (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25620056
Strbp	Rat	casticin	decreases expression	ISO	Strbp (Mus musculus)	6480464	casticin results in decreased expression of STRBP mRNA	CTD	PMID:28444820
Strbp	Rat	CGP 52608	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to STRBP gene]	CTD	PMID:28238834
Strbp	Rat	chlorpromazine	increases expression	EXP		6480464	Chlorpromazine results in increased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	cidofovir anhydrous	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Cidofovir results in decreased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	clofibrate	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of STRBP mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of STRBP mRNA]	CTD	PMID:17585979
Strbp	Rat	cobalt dichloride	decreases expression	ISO	STRBP (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of STRBP mRNA	CTD	PMID:19320972
Strbp	Rat	cordycepin	increases expression	ISO	Strbp (Mus musculus)	6480464	cordycepin results in increased expression of STRBP mRNA	CTD	PMID:32042022
Strbp	Rat	cyclosporin A	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Cyclosporine results in decreased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	cyclosporin A	increases expression	EXP		6480464	Cyclosporine results in increased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	D-glucose	decreases expression	ISO	Strbp (Mus musculus)	6480464	Glucose results in decreased expression of STRBP mRNA	CTD	PMID:17178593
Strbp	Rat	deoxynivalenol	increases expression	ISO	STRBP (Homo sapiens)	6480464	deoxynivalenol results in increased expression of STRBP mRNA	CTD	PMID:31863870
Strbp	Rat	diarsenic trioxide	increases expression	ISO	STRBP (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of STRBP mRNA	CTD	PMID:20458559
Strbp	Rat	diazinon	increases methylation	ISO	STRBP (Homo sapiens)	6480464	Diazinon results in increased methylation of STRBP gene	CTD	PMID:22964155
Strbp	Rat	Dibutyl phosphate	affects expression	ISO	STRBP (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of STRBP mRNA	CTD	PMID:37042841
Strbp	Rat	dicrotophos	decreases expression	ISO	STRBP (Homo sapiens)	6480464	dicrotophos results in decreased expression of STRBP mRNA	CTD	PMID:28302478
Strbp	Rat	dioxygen	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Oxygen deficiency results in decreased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	dorsomorphin	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of STRBP mRNA	CTD	PMID:27188386
Strbp	Rat	doxorubicin	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Doxorubicin results in decreased expression of STRBP mRNA	CTD	PMID:29803840
Strbp	Rat	enzyme inhibitor	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of STRBP protein	CTD	PMID:23301498
Strbp	Rat	ethanol	affects splicing	ISO	Strbp (Mus musculus)	6480464	Ethanol affects the splicing of STRBP mRNA	CTD	PMID:30319688
Strbp	Rat	fenofibrate	increases expression	ISO	STRBP (Homo sapiens)	6480464	Fenofibrate results in increased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	fenthion	decreases expression	ISO	Strbp (Mus musculus)	6480464	Fenthion results in decreased expression of STRBP mRNA	CTD	PMID:34813904
Strbp	Rat	finasteride	increases expression	EXP		6480464	Finasteride results in increased expression of STRBP mRNA	CTD	PMID:24136188
Strbp	Rat	fipronil	increases expression	EXP		6480464	fipronil results in increased expression of STRBP mRNA	CTD	PMID:34044035
Strbp	Rat	folic acid	decreases expression	ISO	Strbp (Mus musculus)	6480464	Folic Acid results in decreased expression of STRBP mRNA	CTD	PMID:25629700
Strbp	Rat	folpet	increases expression	ISO	Strbp (Mus musculus)	6480464	folpet results in increased expression of STRBP mRNA	CTD	PMID:31558096
Strbp	Rat	glucose	decreases expression	ISO	Strbp (Mus musculus)	6480464	Glucose results in decreased expression of STRBP mRNA	CTD	PMID:17178593
Strbp	Rat	ibuprofen	increases expression	ISO	STRBP (Homo sapiens)	6480464	Ibuprofen results in increased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	ivermectin	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Ivermectin results in decreased expression of STRBP protein	CTD	PMID:32959892
Strbp	Rat	maneb	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[Paraquat co-treated with Maneb] affects the expression of STRBP mRNA	CTD	PMID:22563483
Strbp	Rat	metformin	increases expression	EXP		6480464	Metformin results in increased expression of STRBP mRNA	CTD	PMID:25596134
Strbp	Rat	methapyrilene	decreases methylation	ISO	STRBP (Homo sapiens)	6480464	Methapyrilene results in decreased methylation of STRBP intron	CTD	PMID:30157460
Strbp	Rat	methidathion	decreases expression	ISO	Strbp (Mus musculus)	6480464	methidathion results in decreased expression of STRBP mRNA	CTD	PMID:34813904
Strbp	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of STRBP gene	CTD	PMID:35440735
Strbp	Rat	methylmercury chloride	decreases expression	ISO	STRBP (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of STRBP mRNA	CTD	PMID:28001369
Strbp	Rat	N-methyl-4-phenylpyridinium	increases expression	EXP		6480464	1-Methyl-4-phenylpyridinium results in increased expression of STRBP mRNA	CTD	PMID:28801915
Strbp	Rat	ozone	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased expression of STRBP mRNA and [Air Pollutants results in increased abundance of Ozone] which results in increased expression of STRBP mRNA	CTD	PMID:34911549
Strbp	Rat	paracetamol	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of STRBP mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of STRBP mRNA]	CTD	PMID:17585979
Strbp	Rat	paracetamol	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Acetaminophen results in decreased expression of STRBP mRNA	CTD	PMID:11793227
Strbp	Rat	paraquat	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[Paraquat co-treated with Maneb] affects the expression of STRBP mRNA	CTD	PMID:22563483
Strbp	Rat	paraquat	increases expression	ISO	Strbp (Mus musculus)	6480464	Paraquat results in increased expression of STRBP mRNA	CTD	PMID:22563483
Strbp	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Strbp (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of STRBP mRNA	CTD	PMID:36331819
Strbp	Rat	phenobarbital	multiple interactions	ISO	Strbp (Mus musculus)	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of STRBP mRNA]	CTD	PMID:19482888
Strbp	Rat	phenobarbital	decreases expression	ISO	Strbp (Mus musculus)	6480464	Phenobarbital results in decreased expression of STRBP mRNA	CTD	PMID:23091169
Strbp	Rat	phenobarbital	increases expression	ISO	Strbp (Mus musculus)	6480464	Phenobarbital results in increased expression of STRBP mRNA	CTD	PMID:19482888
Strbp	Rat	phenylmercury acetate	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Phenylmercuric Acetate results in decreased expression of STRBP mRNA	CTD	PMID:26272509
Strbp	Rat	phenylmercury acetate	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of STRBP mRNA	CTD	PMID:27188386
Strbp	Rat	pirinixic acid	increases expression	ISO	Strbp (Mus musculus)	6480464	pirinixic acid results in increased expression of STRBP mRNA	CTD	PMID:17426115 and PMID:18301758
Strbp	Rat	progesterone	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	[Estradiol co-treated with Progesterone] results in increased expression of STRBP mRNA	CTD	PMID:20660070
Strbp	Rat	pyridaben	increases expression	ISO	Strbp (Mus musculus)	6480464	pyridaben results in increased expression of STRBP mRNA	CTD	PMID:22563483
Strbp	Rat	quercetin	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Quercetin results in decreased expression of STRBP mRNA	CTD	PMID:21632981
Strbp	Rat	resveratrol	decreases expression	ISO	Strbp (Mus musculus)	6480464	resveratrol results in decreased expression of STRBP protein	CTD	PMID:25505154
Strbp	Rat	SB 431542	multiple interactions	ISO	STRBP (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of STRBP mRNA	CTD	PMID:27188386
Strbp	Rat	silver atom	affects expression	ISO	Strbp (Mus musculus)	6480464	Silver affects the expression of STRBP mRNA	CTD	PMID:27131904
Strbp	Rat	silver(0)	affects expression	ISO	Strbp (Mus musculus)	6480464	Silver affects the expression of STRBP mRNA	CTD	PMID:27131904
Strbp	Rat	sodium arsenate	increases expression	ISO	Strbp (Mus musculus)	6480464	sodium arsenate results in increased expression of STRBP mRNA	CTD	PMID:21795629
Strbp	Rat	sulindac	increases expression	EXP		6480464	Sulindac results in increased expression of STRBP mRNA	CTD	PMID:24136188
Strbp	Rat	tetrachloroethene	increases expression	ISO	Strbp (Mus musculus)	6480464	Tetrachloroethylene results in increased expression of STRBP mRNA	CTD	PMID:28973375
Strbp	Rat	tetrachloromethane	increases expression	ISO	Strbp (Mus musculus)	6480464	Carbon Tetrachloride results in increased expression of STRBP mRNA	CTD	PMID:31919559
Strbp	Rat	thioacetamide	decreases expression	ISO	STRBP (Homo sapiens)	6480464	Thioacetamide results in decreased expression of STRBP mRNA	CTD	PMID:11793227
Strbp	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of STRBP mRNA	CTD	PMID:34492290
Strbp	Rat	trichloroethene	increases expression	ISO	Strbp (Mus musculus)	6480464	Trichloroethylene results in increased expression of STRBP mRNA	CTD	PMID:19448997
Strbp	Rat	triphenyl phosphate	affects expression	ISO	STRBP (Homo sapiens)	6480464	triphenyl phosphate affects the expression of STRBP mRNA	CTD	PMID:37042841
Strbp	Rat	trovafloxacin	decreases expression	ISO	Strbp (Mus musculus)	6480464	trovafloxacin results in decreased expression of STRBP mRNA	CTD	PMID:35537566
Strbp	Rat	valproic acid	increases expression	ISO	STRBP (Homo sapiens)	6480464	Valproic Acid results in increased expression of STRBP mRNA	CTD	PMID:29154799
Strbp	Rat	valproic acid	affects splicing	EXP		6480464	Valproic Acid affects the splicing of STRBP mRNA	CTD	PMID:29427782

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Strbp	Rat	cell differentiation	involved_in	IEA	UniProtKB-KW:KW-0221	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Strbp	Rat	cell motility	acts_upstream_of_or_within	ISO	Strbp (Mus musculus)	1624291	MGI:3033751 PMID:11336498	RGD	PMID:11336498
Strbp	Rat	mechanosensory behavior	acts_upstream_of_or_within	ISO	Strbp (Mus musculus)	1624291	MGI:3033751 PMID:11336498	RGD	PMID:11336498
Strbp	Rat	spermatid development	acts_upstream_of_or_within	ISO	Strbp (Mus musculus)	1624291	MGI:3033751 PMID:11336498	RGD	PMID:11336498
Strbp	Rat	spermatogenesis	involved_in	IEA	UniProtKB-KW:KW-0744	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Strbp	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Strbp	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Strbp	Rat	manchette	located_in	ISO	Strbp (Mus musculus)	1624291	PMID:9674995	RGD	PMID:9674995
Strbp	Rat	microtubule cytoskeleton	located_in	ISO	Strbp (Mus musculus)	1624291	PMID:7744952	RGD	PMID:7744952
Strbp	Rat	nucleus	located_in	ISO	STRBP (Homo sapiens)	1624291		RGD	GO_REF:0000054

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Strbp	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Strbp	Rat	DNA binding	NOT\|enables	ISO	Strbp (Mus musculus)	1624291	PMID:7744952	RGD	PMID:7744952
Strbp	Rat	double-stranded RNA binding	enables	IBA	MGI:104626 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Strbp	Rat	double-stranded RNA binding	enables	ISO	Strbp (Mus musculus)	1624291	PMID:7744952	RGD	PMID:7744952
Strbp	Rat	microtubule binding	enables	ISO	Strbp (Mus musculus)	1624291	PMID:9674995	RGD	PMID:9674995
Strbp	Rat	protein binding	enables	ISO	STRBP (Homo sapiens)	1624291	UniProtKB:O75553 more ...	RGD	PMID:16189514 more ...
Strbp	Rat	RNA binding	enables	IEA	UniRule:UR000415048	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Strbp	Rat	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Strbp	Rat	single-stranded RNA binding	enables	ISO	Strbp (Mus musculus)	1624291	PMID:7744952	RGD	PMID:7744952
Strbp	Rat	single-stranded RNA binding	enables	IBA	MGI:104626 and PANTHER:PTN000857121	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Strbp	Rat	tubulin binding	enables	ISO	Strbp (Mus musculus)	1624291	PMID:9674995	RGD	PMID:9674995

#	Reference Title	Reference Citation
1.	A new double-stranded RNA-binding protein that interacts with PKR.	Coolidge CJ and Patton JG, Nucleic Acids Res 2000 Mar 15;28(6):1407-17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:7744952	PMID:8889548	PMID:9674995	PMID:11336498	PMID:12477932	PMID:22658674	PMID:22681889

Strbp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	41,738,096 - 41,879,054 (-)	NCBI		GRCr8
mRatBN7.2	3	21,328,310 - 21,467,753 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	21,337,855 - 21,414,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	24,809,843 - 24,883,207 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	33,394,801 - 33,468,169 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	31,205,741 - 31,279,169 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	21,817,680 - 21,956,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,828,298 - 21,904,270 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	27,058,852 - 27,186,405 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,338,337 - 17,411,975 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	17,235,208 - 17,308,204 (-)	NCBI
Celera	3	19,776,985 - 19,850,280 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

STRBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	123,109,494 - 123,268,586 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	123,109,500 - 123,268,586 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	125,883,548 - 126,030,865 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,927,139 - 125,070,664 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	122,966,873 - 123,110,397	NCBI
Celera	9	96,532,171 - 96,615,626 (-)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	95,498,948 - 95,645,951 (-)	NCBI		HuRef
CHM1_1	9	126,032,225 - 126,179,120 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	135,300,815 - 135,465,770 (-)	NCBI		T2T-CHM13v2.0

Strbp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	37,459,880 - 37,593,890 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	37,373,240 - 37,593,871 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	37,569,868 - 37,703,878 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	37,483,228 - 37,703,859 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	37,425,388 - 37,502,805 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	37,305,237 - 37,469,228 (-)	NCBI		MGSCv36	mm8
Celera	2	37,255,231 - 37,332,594 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.19	NCBI

Strbp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	4,795,953 - 4,852,398 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	4,732,467 - 4,858,872 (+)	NCBI	ChiLan1.0	ChiLan1.0

STRBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	16,081,061 - 16,239,600 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	16,083,338 - 16,235,943 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	94,249,017 - 94,395,796 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	122,581,566 - 122,645,198 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	122,586,575 - 122,640,167 (-)	Ensembl	panpan1.1		panPan2

STRBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	59,543,172 - 59,689,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	59,614,129 - 59,689,032 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	58,737,579 - 58,884,344 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	60,462,224 - 60,609,435 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	60,461,624 - 60,609,432 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	59,220,684 - 59,367,486 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	59,536,175 - 59,682,512 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	59,628,568 - 59,775,402 (+)	NCBI		UU_Cfam_GSD_1.0

Strbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	191,823,427 - 191,927,414 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	11,592,008 - 11,647,098 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	11,579,002 - 11,647,078 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STRBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	264,045,669 - 264,195,883 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	264,030,135 - 264,195,908 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	297,496,762 - 297,560,978 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STRBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	14,944,447 - 15,023,703 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	14,948,763 - 15,011,359 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	1,045,539 - 1,201,312 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Strbp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	11,671,904 - 11,815,063 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Strbp
520 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	427
Count of miRNA genes:	236
Interacting mature miRNAs:	267
Transcripts:	ENSRNOT00000066377
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	10434306	24512004	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	28441896	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat

D3Rat191

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,343,841 - 21,344,079 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,833,212 - 21,833,449	NCBI	Rnor6.0
Rnor_5.0	3	27,071,774 - 27,072,011	UniSTS	Rnor5.0
RGSC_v3.4	3	17,340,727 - 17,340,965	RGD	RGSC3.4
RGSC_v3.4	3	17,340,727 - 17,340,965	UniSTS	RGSC3.4
RGSC_v3.1	3	17,237,099 - 17,237,337	RGD
RH 3.4 Map	3	189.7	UniSTS
RH 3.4 Map	3	189.7	RGD
RH 2.0 Map	3	155.1	RGD
SHRSP x BN Map	3	7.5699	RGD
Cytogenetic Map	3	q11	UniSTS

RH127865

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	41,751,461 - 41,751,671 (+)	Marker Load Pipeline
mRatBN7.2	3	21,341,679 - 21,341,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,831,050 - 21,831,259	NCBI	Rnor6.0
Rnor_5.0	3	27,069,612 - 27,069,821	UniSTS	Rnor5.0
RGSC_v3.4	3	17,338,565 - 17,338,774	UniSTS	RGSC3.4
Celera	3	19,777,213 - 19,777,422	UniSTS
RH 3.4 Map	3	206.3	UniSTS
Cytogenetic Map	3	q11	UniSTS

C86322

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,341,576 - 21,341,698 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,830,947 - 21,831,068	NCBI	Rnor6.0
Rnor_5.0	3	27,069,509 - 27,069,630	UniSTS	Rnor5.0
RGSC_v3.4	3	17,338,462 - 17,338,583	UniSTS	RGSC3.4
Celera	3	19,777,110 - 19,777,231	UniSTS
Cytogenetic Map	3	q11	UniSTS

BE117919

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,347,482 - 21,347,637 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,836,840 - 21,836,994	NCBI	Rnor6.0
Rnor_5.0	3	27,074,623 - 27,074,777	UniSTS	Rnor5.0
RGSC_v3.4	3	17,344,106 - 17,344,260	UniSTS	RGSC3.4
Celera	3	19,782,989 - 19,783,143	UniSTS
RH 3.4 Map	3	204.1	UniSTS
Cytogenetic Map	3	q11	UniSTS

AA944689

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,422,873 - 21,423,035 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,912,377 - 21,912,538	NCBI	Rnor6.0
Rnor_5.0	3	27,149,995 - 27,150,156	UniSTS	Rnor5.0
RGSC_v3.4	3	17,419,897 - 17,420,058	UniSTS	RGSC3.4
Celera	3	19,858,195 - 19,858,356	UniSTS
RH 3.4 Map	3	211.7	UniSTS
Cytogenetic Map	3	q11	UniSTS

C86322

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,341,486 - 21,341,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,830,857 - 21,831,096	NCBI	Rnor6.0
Rnor_5.0	3	27,069,419 - 27,069,658	UniSTS	Rnor5.0
RGSC_v3.4	3	17,338,372 - 17,338,611	UniSTS	RGSC3.4
Celera	3	19,777,020 - 19,777,259	UniSTS
Cytogenetic Map	3	q11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001429552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC078774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU759091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA512540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK839498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO564209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY320620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY547419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066377 ⟹ ENSRNOP00000062543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,341,452 - 21,414,949 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,830,822 - 21,904,270 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087611 ⟹ ENSRNOP00000072689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,348,580 - 21,414,949 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,828,298 - 21,904,267 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090576 ⟹ ENSRNOP00000069392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,337,855 - 21,414,949 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,831,264 - 21,904,133 (-)	Ensembl

RefSeq Acc Id:

NM_053416 ⟹ NP_445868

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,824,707 (-)	NCBI
mRatBN7.2	3	21,341,452 - 21,414,949 (-)	NCBI
Rnor_6.0	3	21,830,822 - 21,904,270 (-)	NCBI
Rnor_5.0	3	27,058,852 - 27,186,405 (-)	NCBI
RGSC_v3.4	3	17,338,337 - 17,411,975 (-)	RGD
Celera	3	19,776,985 - 19,850,280 (-)	RGD

Sequence:

show sequence

GGTGCTTTCCAGAGAGCAATTTTCAAACATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTCAGGCATATGAGGAGGTACTGTTACCCAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAG
AAAAGGATCGTAAAAAGAAGCTAAAATACCATAGGAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAG
CTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAAC
TATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGACATGGACCTGGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGA
AACTCTGCTAAATACAGTGAAAGATAACCTTCCTATTCAAATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCGTCCATTATAATTCGGAACACGAAAGAGCCAACAC
TGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCT
TCTCTTCGACATGCCAAATGGTTTCAGGCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGCCACT
AGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTGGTGGTCCTGGTCTTCATGATC
CTTGTGAGCGAGACCCAACCGATGCTCTAAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAGCATGCACTTAGACTATCAGCCTTTGGCCAGATTTATAAAGTACTGGAGATG
GACCCTCTTCCATCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCCGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAACAA
GAAGATGAAACGAAACTTAAGGAAAATTCTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGCTTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCC
ATGCCCCAGTCTTCACAATGTCGGTAGATGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAGGTTTTACAGGCAATGGGATACCCAACAGGT
TTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTGTACAACTGAGACCTCCAGTACCTTAGA
GGTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTG
TAATGGAGGTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAAAAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAG
AAAAAGAAGATCATTCCTCAGGCAAAGGGTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGGCAGTTCGAGGCAGAGGAAGAGGAACTCTGACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCC
TGGATATATAGCTCCAGGTTATGGAACTCCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGTTACCCGTTATGAAATTCCCAACATATCCTGTTCCCCACTACT
CATTCTTTTAGCAAATGACAGAAGCTCATTCCTATTGAACAACAATACAGTACAATGCAGAATGTTAGAGAAAAAAGCCTTTTTATCCTGCTTTCTTTGAACACATACTTACTTGATCAAAATTATTT
GTAAAGAACATCTTTCCTACTTTTTGATTTTAACAAATGCAAATCCAGTTCTCTAAAACTTGAAAACAAACAAAAGAAACCAGTTCTGTGAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCC
CCTTCGTTGTAGGGAAGTCTAGCAGCTCAAAGTTGACGTTTTAAGAGAGTATCAGATTATGTAAAGTTAAATTTGTGAAGGATGTATAGAGTCTCAACACTGATCACAATAAACTGCTTTGTTGTAAC
ACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTATCTGAGTGATATGTGCTTGCTCCAGGGCACTGGAATTTGGGCTGTAGTTATTTTTTTTTTTTAAATAAAGTAGAAACTTTTCATTTA
AACCTTTACTTTGTAAATAACGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTATTATTTTTGATTTGTTTTGTTATCAAATTTCAAGGAATTGAAAACTAGTAATAA
CTTGGCCCTAGAAACCCATTTATTTGTAAGCAAGCCGCTAAAACAAAGCAAAGATGATTTCTCAATCTATTCATTTTGTAAGCTCTATGTACTCCAGTTGTACAAGGGCATCCCCTGATAAGGTTACA
TTCTGTTATCCCAGCATTGCTTATTAAAATGATGGCACCATCCAAAGATGGGGAAGGAGGATTGTGATTATCTTAGTTTACGAATTTCCAAGTTTAAAAAAAAATAAATTAATCAATCACC

hide sequence

RefSeq Acc Id:

XM_008761777 ⟹ XP_008759999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,877,460 (-)	NCBI
mRatBN7.2	3	21,341,452 - 21,467,752 (-)	NCBI
Rnor_6.0	3	21,830,822 - 21,956,988 (-)	NCBI

Sequence:

show sequence

AGCGGGGAGCGGACGCGGGCGGAGCGCGGCGGCGCGGGTGCTTTCCAGAGAGCAATTTTCAAACATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTCAGGCATATGAGGAGGTACTGTTACC
CAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAGAAAAGGATCGTAAAAAGAAGCTAAAATACCATAGGAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAAC
ATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGG
GAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGACATGGACCT
GGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGAAACTCTGCTAAATACAGTGAAAGATAACCTTCCTATTCAAATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAG
CGTCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGAC
TTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTTCAGGCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAG
AGTACCCACATGGGCACCATTGAAAGGATGGCCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTG
GAATACTACTTCCTGGTGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACCGATGCTCTAAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAGCATGCACTTAGACTA
TCAGCCTTTGGCCAGATTTATAAAGTACTGGAGATGGACCCTCTTCCATCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCCGGGTCTTCAGCTCTAAAGAGGCCATT
TGAAGATGGATTAGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATTCTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGC
TTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCGGTAGATGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCA
GTGAAGGTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATAC
TGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCA
TCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAA
AAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATCATTCCTCAGGCAAAGGGTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGGCAGTTCGAGGCAGAGGAAGAGGAACTCT
GACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCCTGGATATATAGCTCCAGGTTATGGAACTCCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGTTACCCG
TTATGAAATTCCCAACATATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGACAGAAGCTCATTCCTATTGAACAACAATACAGTACAATGCAGAATGTTAGAGAAAAAAGCCTTTTTATCCTGCT
TTCTTTGAACACATACTTACTTGATCAAAATTATTTGTAAAGAACATCTTTCCTACTTTTTGATTTTAACAAATGCAAATCCAGTTCTCTAAAACTTGAAAACAAACAAAAGAAACCAGTTCTGTGAA
ACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGAAGTCTAGCAGCTCAAAGTTGACGTTTTAAGAGAGTATCAGATTATGTAAAGTTAAATTTGTGAAGGATGTATAGAGT
CTCAACACTGATCACAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTATCTGAGTGATATGTGCTTGCTCCAGGGCACTGGAATTTGGGCTGTAGTTAT
TTTTTTTTTTTAAATAAAGTAGAAACTTTTCATTTAAACCTTTACTTTGTAAATAACGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTATTATTTTTGATTTGTTTT
GTTATCAAATTTCAAGGAATTGAAAACTAGTAATAACTTGGCCCTAGAAACCCATTTATTTGTAAGCAAGCCGCTAAAACAAAGCAAAGATGATTTCTCAATCTATTCATTTTGTAAGCTCTATGTAC
TCCAGTTGTACAAGGGCATCCCCTGATAAGGTTACATTCTGTTATCCCAGCATTGCTTATTAAAATGATGGCACCATCCAAAGATGGGGAAGGAGGATTGTGATTATCTTAGTTTACGAATTTCCAAG
TTTAAAAAAAAATAAATTAATCAATCACC

hide sequence

RefSeq Acc Id:

XM_039105982 ⟹ XP_038961910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,877,460 (-)	NCBI
mRatBN7.2	3	21,339,143 - 21,467,753 (-)	NCBI

RefSeq Acc Id:

XM_039105984 ⟹ XP_038961912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,876,615 (-)	NCBI
mRatBN7.2	3	21,339,143 - 21,459,390 (-)	NCBI

RefSeq Acc Id:

XM_039105985 ⟹ XP_038961913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,831,549 (-)	NCBI
mRatBN7.2	3	21,339,143 - 21,421,773 (-)	NCBI

RefSeq Acc Id:

XM_039105986 ⟹ XP_038961914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,922 - 41,808,843 (-)	NCBI
mRatBN7.2	3	21,339,138 - 21,404,889 (-)	NCBI

RefSeq Acc Id:

XM_039105987 ⟹ XP_038961915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,921 - 41,799,023 (-)	NCBI
mRatBN7.2	3	21,339,138 - 21,389,259 (-)	NCBI

RefSeq Acc Id:

XM_063284711 ⟹ XP_063140781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284712 ⟹ XP_063140782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284713 ⟹ XP_063140783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,876,638 (-)	NCBI

RefSeq Acc Id:

XM_063284714 ⟹ XP_063140784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284715 ⟹ XP_063140785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284716 ⟹ XP_063140786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,831,549 (-)	NCBI

RefSeq Acc Id:

XM_063284717 ⟹ XP_063140787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,879,026 (-)	NCBI

RefSeq Acc Id:

XM_063284718 ⟹ XP_063140788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284719 ⟹ XP_063140789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284720 ⟹ XP_063140790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284721 ⟹ XP_063140791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,879,026 (-)	NCBI

RefSeq Acc Id:

XM_063284722 ⟹ XP_063140792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284723 ⟹ XP_063140793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,876,542 (-)	NCBI

RefSeq Acc Id:

XM_063284724 ⟹ XP_063140794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284725 ⟹ XP_063140795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284726 ⟹ XP_063140796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284727 ⟹ XP_063140797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,879,054 (-)	NCBI

RefSeq Acc Id:

XM_063284728 ⟹ XP_063140798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,922 - 41,808,841 (-)	NCBI

RefSeq Acc Id:

XR_010064704

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XR_010064705

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XR_591457

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI
mRatBN7.2	3	21,328,310 - 21,467,753 (-)	NCBI
Rnor_6.0	3	21,817,680 - 21,956,988 (-)	NCBI

Sequence:

show sequence

AGCGGGGAGCGGACGCGGGCGGAGCGCGGCGGCGCGGGTGCTTTCCAGAGAGCAATTTTCAAAC
ATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTCAGGCATATGAGGAGGTACTGTTACCCAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAGAAAAGGATCGTAAAAAGAAGCTAAAATA
CCATAGGAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGA
ATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACAT
TGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGACATGGACCTGGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGAAACTCTGCTAAATACAGTGAAAGATAAC
CTTCCTATTCAAATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCGTCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCC
TCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTTCAGG
CAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGCCACTAGAGCTTATATGTGAAAAGTCTATAGGT
ACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTGGTGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACCGATGCTCT
AAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAGCATGCACTTAGACTATCAGCCTTTGGCCAGATTTATAAAGTACTGGAGATGGACCCTCTTCCATCTAGTAAGCCTTTTC
AGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCCGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATT
CTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGCTTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCGGTAGA
TGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAGGTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTT
CCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCACA
GCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAA
ATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAAAAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATCATTCCTCAGGCAAAGG
GTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGGCAGTTCGAGGCAGAGGAAGAGGAACTCTGACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCCTGGATATATAGCTCCAGGTTATGGAACT
CCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCT
GAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGCAGTTTCTGTTCATCGCTAGCATTAAGGCTGCTGGAACTTTGTTCCCACACAGAACCTGCAGTTCATGAGGTCGGCTTCTGTTAAAGG
CTGTACAAAGCAGAGCAGAGAAGAGCAGTGCACTGCAGTCCTGTGCCTGCTGATGCCAGGTCCTTTTCTGGGACTGGGGATCAGAACAGAGGCTCTGACCAGTGGAAGCATCTTAAGACTGAATGTTT
CCTTGCTGATGGAATTGGCCTTGCTGTAAATAAATACCCTACTTTGGGAGATAGTATATTAACGGTGGCAAAAGTTATTAATTCACTTAGTAGATTAATTATAAAATACTGAATATTTGTAGGCTTTT
CAATACCACAGAAATTGGTGTTACTTGAGGATTTCCTCAGGTAGCATATTTCCCTGGTATTCTTGTTCTGGTTATGCCTGAACTTTGCTTTGGTTATGCCACTCATGTTCTGCCCAAGTGTGTGGTCA
GAAAATGAGAAGCTCAGCACCACTGCAGCCCTGCTTTTGGCAGCTCTTTATATAGTCCTGCAAAGAACTCAATGGGAAATGTAAACCCTTACTACATTCTTTCAGTGGCAGGTGAGTGTTATCATTAT
AAGAAACCATTTGCTGTAATTGTCCTGGTTTTTATTTTTCACTAATGATAGGAGTGGAGGAGAAGAGTCAGTAATATGTTAGGAAAATGAGCTAGAGATGTTTTTCTTCCCAAACTGTTTGGAACCTG
TAACCAGGGACATTGTAAGGGTGACATGTGAAAGCAGCCCACTCTGAATGGTCTGCCTTTCATTTCCACTCTTTTAATGCCTCAAGTCACCCAGAGACAGACAGATGCTATTGCATTTAGCTTTATTC
TCTGCAACATCTAGTGTCAGATAGCTAGGGATCATGATTTCTTAGTGTGACTAGGAGGCTTGGGGAGGGAGATGGGTGGTTTGTCAGTGACAACAGCAGACTCAAGTACCTGGCATCTTGATGAACTT
CAACACTGGTGTGTGTTTCTGTACCACCTAACTTACAGAGCACAGTACAGCCGATTTAAGATGAGTTCCCCTTTTCGTAATAGTATTTGGCAGAAGACTATTTTAAGTAAAGAATTCATGTTGGATTA
ATTATATAAATAAGTATCCTTTTCCACCTACTATTATTTCAATTGGGGATCTTACAGCTTCCATTAATGTTTGAAGCATTGATATTTGGAAGTTTTTAAAAATAGAACCATAATGTAAATTTGGGTTA
TATAAGATTTACAGCATAGTTAGAGATATAGAATAGAAACCATATGAGAATCTGGGCCAAAGCATTTCTCTCACTCCAGCCCATTTCTGTGGAACTTGGATATCTCATGACTTTATATATTCAAAGCT
TTTAATGGTACCTGGCACACAGCAAGTATTCTGAACACTGACTCTGCTCTTCTGGTTAAGGTGATAGGATGGGTATGAGGGAGGTGAGTCTATGCTGATTTAAGCAGCAGGCGTATGGCCTGCTCAGG
GTAGAGTTGGGCGTACTCCTTTGTGCTCATAGGCTTGGGCAGCTTCCAGGCTGAGGCCAGACTTGGCAGAACAGGTTTGCTCATATTTCTGCTGCAGCAGTTAAATCAGCCAACTTGCAGTCCAGGGG
TTTTATAAATACTTGTTTAGGATTTATGGGTGCTTAGAATTTTACAAGGGCTGAACTTAGACCATCTACCTGCCAATTCCAGTTTCCTACCCACACTGTAGTAATTACAAAACCCACAACGGCCAGAA
TCTAGTTTTCAACGCTTTTGTGTTTGTTGGTAAAGAACAAATTATCATAGGAAGCATACTAACAATTTCTGTTGACTCATTTTCTGTGACGAGTTCTTGTTTCATGCTTGGACATTCAGTGGAACACA
TCGGCAGTCATCAGCATGTGATGCCTTCCTCTTATCTGACACACTTAGGGCACTATTAGTCTAGTCTCCTGTATCTGTCTATCTACCTATTTGGATACAATTGGGAAGTTTCTATTTAATACAAGGAC
ACGTGTCTTGTTGGTAAATTGCTGCTGCTGAACTGAATAAAGGGCTTTTATCTACTATGGAAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCTCAGAAGAAGAGGGTGGACAGGTTGAGTCCCA
GGCTGGTAGGAGGTGAGTTAAGTGGAAAGTTCCGAGATGCTGTAATTTTAGAAAAATTGTGGTCAAGGATTGATCACCTTTAAGGAGGCCGGTGAGTTAAACTTGTTACCTAGTAGAAGTTACCATAT
TCCTGCTTAGCTGAAACTGTTGTTAGATTCTTCATCTCACTTAGCCAGCATTTGAAGAAAGGTTGTTAAAGTAGGCATGCATGCACAACCATCAACAAAACAAACCCCTGCCAACAACAACAACGACG
ACAATCTAAAAAACCAAACCACAACAAAACAACCCTGACCAGTTATCAGAGGAGGATCATGGCCTTTCTTCCTAGAACTTTACCCATTTGTGCAAGTGGCTGCATTGCTACACAAAGGGGCATTGTAA
CAATTGCACTGTTGCGGTGCACAGGGATGGTCCGCGTCTTGTCTTTGCTGTTGCATGGCTCAGTGGTACATGACCTCAGCACAGTGGCAGTTAGGACATTGCTGGCCCGCTTCTTTGTTTGAGATTAT
TCTTCCTAGTTTCCTTTGTACAACTAACTATCCTAAATAGTTCAGTTAAAGGCAGCCTTTGTGTAGGACTTAGGCTTGGCCAACATTTTGACATTATAACATTGTCATCTACAGTGTTCATGTGACAA
CTGTATAACTACCACAAAAATTGACAGGAACTATATTGGGGTCAGAAGAGCTATTTTGGAGAGTGAGCAGATTTAACAACTCAGAATGGGAATGAGAAAGGAACATTGCTAGACTTGGTGTTGTGGGC
ATGTGTGGCACTGGAACATTCCTAATTCTGAGGCAGCCCTCTTGGAGGTGCTGTTATTTCTGATCTAGACATGAATCTAATGTTCAGGGTTAACTGCTAGAGACAGGAATGAATCAAATCTGTGTTTT
TGTACCAAAGCTCCTTTTTGCTCAGTAGGCTACAAATTATAATAAGCAGTGTACACTGGCCCTGATTTCTAGGCCGCCTGTATTAAGCATATCTCTGAGCAGAACAGAATACAGGAATTTTTTGCTTT
TTGGGGGTAGGGGTCACTGATGATAAAAGGATATCTAACAAACATAGGATGAAGAAAAAGTGGGCTGTTGAACAGAGGAAGGTTTTGTGTCTAAAGCTTGTTCTATTTGTATGAAGTACCAAGAGTTC
TCATTAGCTCTTCTTTCTGGGAACGTATTATTCTATGCTTGAGAAAGGTGATCATGGAGTTTGAGGGGTTTGCTCATGGTGTCTGATATAGAGAGGTAGACCTGGTTAGGTATATAGTAAGGTAGCAC
ATCAAAAGACCCATGCTGATTGAATGGTACTTGACAGTTTGGAATGTGAGTCTTCCCTCCATTTTAGGCCCAAGGTTCAGTGAACATGACTTCAGAGCTGCAGGGTCTTTGGATGTATTTGTTTCTCA
TCATGATGCTTGCAGGCTACTTCCCGACTTCATCCAATTGCTTAGGGGCAGGAAAATGTGGGGATCCGATCTATGCCCCTGATCTATCATCTTTGCCAACTGACACTTTTCCTGCAAAGCATGCTGTG
CTCCAGTGGGGGAATTGGAAGAAAGATTCTTATTCTAACCAAGTTCCAGAGCATCACAGTGTAAAGGAACAGAGATCTGGATAGAACCCAGAGCACTGTAGCACTTTCCTTTTCTGTGCTCCATTTCT
TGCTCTGAGTCCTGCAGATGTAGTGATGCATGGAATGCTTTTCATGGAACTAAAACCTCAGAGGTCTTTGCAAACCAACTGCTTATTTGTGGCAAAACACTGTGGCTTCTAATTAGTGAGTATTGAGC
CACACAGAGGAAATTACTTTTCTGTGCTGCTCTGAGGGTTAACAGAAACTCCACTAGGAATTAGCTTTGAGTCCTGCAACTGAAGGACCTAGAAGTTTGCTCTTATTAGTAAAGTGACTTTACTCAAT
TACATAGTGCTTGGTGTCAGGCTCTGCATGCTCTTGATTGTGTCCTGCTCAGCTGGTCCTGTGCATTCCTCACCACCCTACTTCACAAAGGCCATTTGATATGTGTCCTTCTTCTGTTTGGGGCACAT
TCTACTTATCCTTCTTCTAGACTTTGGGGACTATACAGTGTGTGCCTTATAAAATGGAACAAACAGAACCAATCGAGCTCTTCTTTTCCCTTTCCTGCCCTAGCTCATGTTCTCCCTGATTCCTGTGG
AAATGGATTGCTAATCAGCTCTAAGCTAGGAAGCCTGGTTTTTTGCTAGTGGCACAGTGGAATATTAATAGTCTTGTAATGTTACCAAAACCGTATATAATGAAGTACATCTTAGTGGATGCGCTTGG
AGAAATTCTGGGCTTTTAGAAATGTGATCTATTTTTTTGGGGGGGGGGTTGGCTAGTCCACATGTGTAGAATCTGTCCTACATATTTGAGTCTACATTAAGAAAAAATAATGGATATCCTCCTCTGAG
ATGTTAAAACAAAATATGGAGATTGTCACTTGAGGAACTCAGAAAAGCTTACGTCACCTAGAAACAAGGTCAAAGGACCAGGATGTCAAGGCCAATGAAGGGGTGGCCTTAGGCAAACATGGATAGTC
TTACCAGTTATTTTAAAGGATCTTTATTTACTTATATGTGGTTCAAGAAGGGTAAAGACAACTAGTGGACAGTTTGACGTGAAGGTGCTACAGGAGTGCAGGTGAGGTGCTTTAGAAGAACACAAGGT
AAGAAAGAAGTGTGACTGTGGGATGCTGATAGCATATGCTGAAGCCTTTGGTGGTGCATGAGGAAGACTGAGTTCATAATAGTCTTAGCTGTGCAGTGACACCCTGTCAAAAGCAACACCACAGCTAG
TTGCTTTGGGTGGTGTAGAAGAAATTGTGCCATGGGATGTCCATTTTAATCACCTGTGAAAGGACTGGGCTACACTGCTGGAAATAGCTCCTCTTTCTTCAGCATATAAACTTGCTGAGAGAAACCTT
CACTCCATTTCTTAACCCTCTACTTTGGCTGTGCTCAGTGTTGGGAATGCCACATGATGAGGTTTTCAGCCTAGGAGAACTGAACAATGACAAATGACCAGGTGTAAGGAGCAGGAAAGGGAGGTCAG
GAGGTCTAAGCAGAATCAGAGCTGTTCTCCGTAGTAGAATTGCCAAAGCCAGCTGTTCTGCTCTACCTGCTCATAGGGATCATATTCCTGGTTTCAGGGTTGATGTCTAATAGGCCCATTTTCAGTTT
TGAAGAGCATGGGAAGAAGAGCCATGGGGTGAGTTGACTTAGAGCATAGGAAGGGCAGAGTCAGAATTGCAGTAGTCCTTGTCCAAGTGACTCAGACCTTCAGATGGTATAGCACAGAGCAATGAGGG
GATTCTGGAGGGGACCTTGGCAGGGATGTCTGTGACCAGAAGAAGGCGCAGCCTGTTACATCTCGTGAAATGGTTAATAGGGTGAGATAGTAGGTGGGAGTTATTTTCCAGAACCACCTTTTGAAGAG
CCCTGGGTGCTGTTTTGTGATTACTATTCTTCAGTGTGGTAGGGAAATTGTGAAAGAACAGCCAGCCAAGAGCCTCATGGTTGGACTGTTGAGAAGGGGGCTGTTGCCACGCCCAGTAAGGATGGAGG
GAGTTGCCAGAGCTGTAGCAGAGATGGGCAGCAGCAGTCTCTGCTCAGAGGTCTGGTTGCTCCATTGCACTGTGGAGGGCCACGTCTGTTCTTCATAAGTAGATGTGATGGGCCATCCTATCAGGAGG
GTGGTGCTGCCTCAGACCAGGAAGGTCATGTTTAGAGCCCCTGGGGTGGAGCAAGGGCTCCAATGGTGCTGTGGGAAGACGGCATCAGGCATTCCCCCCGCCCCACCCCTTTTATTTTTAACAAGGCT
GGGTCTGCCCATTACAACATGATAGGTACTAGATATTCTCTTATACTGGGGTCTTTTGCTTTCATTTAGATTTCTTTTTTTAATTTTAAAAATTTAGCCTGTGTAAGGGCAAGTGCCTTTTGGGGTGT
CTGTATAGTATAGGCTAGCCATTGGAAAGCAATTTTCTCTATAGAGGTTCTTAAGGAAGAAAAAGATATGTGATTACTAAAGGGTTAATGTCCATCTAGCCATGTCTCTTGGGTGTCATGGACAGGAA
ACCAGGTGGGAATCACAAGGAGCATATTTTTTTTTTTTTTTTTTTTAGTGCTGGGAATGTGTATGTGTGTGTCTGTGCACGTGTGTGCGCGCGCATGCTCTTCAAAAGTAGGGCCTATTACATAGTAG
GCTGCTACTATACCAGTGAGTGAATCAGGATGGATTTCTGTGCTACTGAATTTATGTACCTCTTTTGGGGACTAGACTGGAGGTAGCTATTATTTGGAGGCCCTAGGTCAGAACTTTGGAAAAGTTAA
AGGTATTTGTGATACCAAATCTGTCAGTGAGAACTCCAGGGCCATATAGATGTCATCTTCTCATCTGTTACAATGAAAATCTGTTGCGAGCTCTCCTCCTACCCTATGCCAACAACCTTTTCCTTTCC
AGAATCCTTCCAGAATTTACTCACCACATTGGAGAATGGTAAAGAGCTGGATGGGTGGAGTGAGCATTGTGGGGCACACAGTTGCTACCACACTCTAAACTCTGCAGCATGAAATTACCTCAGATGGT
ATAGGCGTTGGTCTGTGTGGCAGGGTCTAATCACTTATTACTTACATACCAGGCCAGAAGCTAGCCCTGGCCTTAGACTGTAGAAGATTATTTACCCTTTTATATTTGCCGTTTGGCAGGTTCCAGCT
CTCCTATGCACAGGAAAGTGCAGATCCCATCAGCAGGAAGCGACAGGTACACACTGCTGGGCAAAGAGTGAGACAGCAGGGCTCAGGAAGGTCCATGATGAGCTCCCAGAGTAGGGAAGATGTTTGCG
TTGGGGAAAGCCCACGGGAGGCAGCAGCTATGTAGTTAGACCTAGAGGATGATGTGGTTTCTCCAAGAGAACAGGTCCAGATGGTAGAGAGGTTGTGTCTCAGCTACAACCTCTGTGGGGGTGACGAC
AGGCTGAGGAGTGCAGAGTATTCTCTAGGTGGTGGGTAGTTGACAGATGAGTTTAGGAGGGTCAAGTGACCACAGCCACATTACATTGAATAATGTCACTCTGATCATGGTAGACATGCCTGTGACTA
CAAATGATAACTCTGCTTAGTGTGGGTCAGATGTGTACGGGGTGAGGCACTCTTAGAATCATGATGAAAAGTACAGCTGGAATGTTGGAAGGTTTTTGTGCCAGGATGCCTTCGTGATGAATGAGTGG
TGTCACATGACAATTCTTCAGGCCTTTTCTCTCTTGTGAGCCTAGATATCACTAACAACCTTGCTCTTTTTTTGTATCCAGGCCAATTTTGGCTTTGGCCCGGTGTTTCTAGGGTAAAATTGTGAACA
CATATCCCCATCCTTACCCCCTTTAGAACCAAATCACAGAGCAAGAAAGCTGTATGGAATGTAGACACACTTAAAGCCAGTCCTTGCAGCTTTCTACTGACAGCTGACTACTGTCCTGGTGCATCCTG
GCCTGGAGGGTACCCTCTCTTCCAGGTAATTTCCTCAGTGCAGCTTTTAGCCAGGTTGAAAGCAGCTTTCATTTAGAAAGTTTCAGCAACAACTGCTTGCTTTCAGTCAGTTTTTGTCATCTGCAGAC
ATTCTGCAAGGTGGTATGCTTAGGAGACATATTGGGTGTCTCAAGCCTGTCTTCACTCCCTCTAGTGCAATGGTTCTCAATCTTCCTAATGCTGCTATCTTTTTAATACAGGTCCTCACTTTGTGGTA
AACCGCAACCAGGAGAATATTATTATTTTTTTTGCTACTTCATAATTACAATTTTGCTATTGTTATGAATCATGCCACAGGGGTCTTGCTGCCTGGTCAGATATGGGATACCTCTTTTGGTGATAGAA
GAAGCATTCCTCAACATTTTCTAGAGAAGTTTCTGGGTTCATGGGAGGGAAGATGATTTGTGTATGGAATAGAAGGGAGTCTGGCTTTGCCTTGATAGTGTGCAAGTCTGTCTATAGCTGATACTAGG
AATATATTCTCTTTCTGGTTTTTCAAGACAGGGTTTCTCTGTGTATGCCTGGCTGTCCTGGAACTCCAGCTATAGACCAGGCTACTCTCAAACTCATGGAGATCTGCCTGCCTCTGCCTCCTGAGTGC
TGGGATTACAGGGTATGCACCACCACATTCGGCTCAGGAATATTCTTTTATTTGGCAGCCAAGTTCTGAAAAGCGCTATAGCCTCATAGGGTGGTTTTTGTCACTTGGCATGGAATCAGCCAATGATA
GACCTTTGCCTGTTGACTGTATCATAGCCTTCAGTTACAGGCTTAATGCCATGATGATGGTCAACATTTTAAATAAAAATCTATGTCCCTTAGCTATTTACACTGTACTTGGAGCCAGAAAAATGTTT
TTATTCCTAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGGGAAATGAATCAAGAGTAAGGAGAGGAGTATTAAGGTAGTTATAAAGACTGTCTTTCAGGTTCTTC
CTGTAACGTGGAAAGTTGCAATTCTAATTTCTGGTTTCTTGCCTTTCACTGAGTGGTTGATATGCTCCACCCTTCCTGGCTGAGTGTACCTTCCCACTCTGGCCAAGGAACTTGGCTGTTGTTTAGTG
AATCAGAAACAGGACACAAGGATCTAAGTATAAACCTGTCCCCTGAACATAGTCATGTACCAGCTGACCCTCAAGGTATCAGTGGTATCCATTTGTGAAGAAAGATTTGGATGTGAGCCCCATGAGCC
TACATTCCACAAGTACTCTACTGTTAACCTGACCCAAGGATAGAAATGTTGCTGCTACCATATGCATGAAGCCCCTTCTCTAACATTCATCTTTTATGCTCAGGCTGCCTGGTGCCATCAGGTAGTGT
TCACTCCTCACAAAGAATCTAAGGATGTTGAGTGCTGTTTTTTCCTCCTAGCCCACTCCCACGGTAGTGGTGTGGGTGGTCTTACCTACCCTTATTCATGTTTCTGGAAAAGCATATTTAGTTGCAGA
AACTGCCGGACTTGGCCAGAGCATCCTTAGCCTGTCTAGGGTCCTTGCTTTGTATCCCAGGAACTGGGAGTAGCACTGGGCTCATGAAGCACACCAAGGCTCAAAAAACAAGTACTTTGTTGTCCAGG
AGAAAACCTGCCTTTTGGAGAGTTACAGGTGGCATTTTTCTCCTGGCTTTAGCTTATTTGGGTCTGATGTTGGCCAAGTTAGTGCTTAGGAGTCTGTTTATAATGCCCATTTGTATTTACTGTTTTCC
CAAGTATACAGTGTAAATAGCATAATTTGCAGTACAAAGTCTTTGGCAATAATTTCATGATGTATACTGTTAAACATTGGAAACCACAAGCACCACGGACTGCCCCTTGCTTTCTGGGCCTGTGGTGA
CATGTAGACTCTGGACTTTCCAAGTGTCAACGTGCTTGAAGCAGCAGCCTGCATGTGTGGACTATCATCAGTGCCTCGCCCAGAGATGCCTGGCCTTCATCCAAAGGGACCCTGCGAGCAGCACCCAC
ACTGCGGCTCCTTTGTGTGGAATATGTTGGACTCTGCCATAGACTCCTTGTCTGGCTGCTGCGGTTTGTAATGCCTTGACATGTTGCATTTCTTTCCCATTTGGATGAATAAAAATAAACGCTGTGTA
AAATAGGAA

hide sequence


Protein RefSeqs	NP_001416481	(Get FASTA)	NCBI Sequence Viewer
	NP_001416482	(Get FASTA)	NCBI Sequence Viewer
	NP_001416483	(Get FASTA)	NCBI Sequence Viewer
	NP_445868	(Get FASTA)	NCBI Sequence Viewer
	XP_008759999	(Get FASTA)	NCBI Sequence Viewer
	XP_038961910	(Get FASTA)	NCBI Sequence Viewer
	XP_038961912	(Get FASTA)	NCBI Sequence Viewer
	XP_038961913	(Get FASTA)	NCBI Sequence Viewer
	XP_038961914	(Get FASTA)	NCBI Sequence Viewer
	XP_038961915	(Get FASTA)	NCBI Sequence Viewer
	XP_063140781	(Get FASTA)	NCBI Sequence Viewer
	XP_063140782	(Get FASTA)	NCBI Sequence Viewer
	XP_063140783	(Get FASTA)	NCBI Sequence Viewer
	XP_063140784	(Get FASTA)	NCBI Sequence Viewer
	XP_063140785	(Get FASTA)	NCBI Sequence Viewer
	XP_063140786	(Get FASTA)	NCBI Sequence Viewer
	XP_063140787	(Get FASTA)	NCBI Sequence Viewer
	XP_063140788	(Get FASTA)	NCBI Sequence Viewer
	XP_063140789	(Get FASTA)	NCBI Sequence Viewer
	XP_063140790	(Get FASTA)	NCBI Sequence Viewer
	XP_063140791	(Get FASTA)	NCBI Sequence Viewer
	XP_063140792	(Get FASTA)	NCBI Sequence Viewer
	XP_063140793	(Get FASTA)	NCBI Sequence Viewer
	XP_063140794	(Get FASTA)	NCBI Sequence Viewer
	XP_063140795	(Get FASTA)	NCBI Sequence Viewer
	XP_063140796	(Get FASTA)	NCBI Sequence Viewer
	XP_063140797	(Get FASTA)	NCBI Sequence Viewer
	XP_063140798	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00521	(Get FASTA)	NCBI Sequence Viewer
	EDM00522	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062543
	ENSRNOP00000111602
GenBank Protein	Q9JKU6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_445868 ⟸ NM_053416

- UniProtKB:

Q9JKU6 (UniProtKB/Swiss-Prot), D3ZDD7 (UniProtKB/TrEMBL), A6JET9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEVKKDDAVENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQ
IQKLTEEKYQVEQCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNR
PLGAGEALRRVMECLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSK
AIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFDADIECMSSDEKSDNESKNDTVSSNSSNNTGNCTTETSSTLEVRTQGPILTASGK
NPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFSGPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYIAPGYGTPYGY
STAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF

hide sequence

RefSeq Acc Id:

XP_008759999 ⟸ XM_008761777

- Peptide Label:

isoform X5

- Sequence:

show sequence

MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEV
KKDDAVENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDR
QKCLNALASLRHAKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFG
QIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVL
QAMGYPTGFDADIECMSSDEKSDNESKNDTVSSNSSNNTGNCTTETSSTLEVRTQGPILTASGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFS
GPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYIAPGYGTPYGYSTAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF

hide sequence

Ensembl Acc Id:

ENSRNOP00000072689 ⟸ ENSRNOT00000087611

Ensembl Acc Id:

ENSRNOP00000069392 ⟸ ENSRNOT00000090576

Ensembl Acc Id:

ENSRNOP00000062543 ⟸ ENSRNOT00000066377

Protein Domains

DRBM DZF

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-49928	BioCyc
Ensembl Genes	ENSRNOG00000010150	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000066377	ENTREZGENE
	ENSRNOT00000138609	ENTREZGENE
Gene3D-CATH	1.10.1410.40	UniProtKB/Swiss-Prot
	3.30.160.20	UniProtKB/Swiss-Prot
	3.30.460.10	UniProtKB/Swiss-Prot
InterPro	dsRBD_dom	UniProtKB/Swiss-Prot
	DZF_dom	UniProtKB/Swiss-Prot
	DZF_dom_C	UniProtKB/Swiss-Prot
	DZF_dom_N	UniProtKB/Swiss-Prot
	NT_sf	UniProtKB/Swiss-Prot
	STRBP_DSRM_1	UniProtKB/Swiss-Prot
NCBI Gene	84476	ENTREZGENE
PANTHER	PTHR45762:SF1	UniProtKB/Swiss-Prot
	ZINC FINGER RNA-BINDING PROTEIN	UniProtKB/Swiss-Prot
Pfam	dsrm	UniProtKB/Swiss-Prot
	DZF	UniProtKB/Swiss-Prot
	DZF_C	UniProtKB/Swiss-Prot
PhenoGen	Strbp	PhenoGen
PROSITE	DS_RBD	UniProtKB/Swiss-Prot
	DZF	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010150	RatGTEx
SMART	DSRM	UniProtKB/Swiss-Prot
	DZF	UniProtKB/Swiss-Prot
Superfamily-SCOP	dsRNA-binding domain-like	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV89_RAT	UniProtKB/TrEMBL
	A0A0G2K3L7	ENTREZGENE, UniProtKB/TrEMBL
	A6JET8_RAT	UniProtKB/TrEMBL
	A6JET9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDD7	ENTREZGENE, UniProtKB/TrEMBL
	Q9JKU6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Strbp	spermatid perinuclear RNA binding protein		double-stranded RNA-binding protein p74	Name updated	1299863	APPROVED
2004-09-10	Strbp	double-stranded RNA-binding protein p74	Spnr		Symbol and Name updated	1299863	APPROVED
2002-08-07	Spnr	double-stranded RNA-binding protein p74			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD