Strbp (spermatid perinuclear RNA binding protein) - Rat Genome Database

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Gene: Strbp (spermatid perinuclear RNA binding protein) Chinchilla lanigera
Analyze
Symbol: Strbp
Name: spermatid perinuclear RNA binding protein
RGD ID: 8925212
Description: ENCODES a protein that exhibits DNA binding (ortholog); double-stranded RNA binding (ortholog); microtubule binding (ortholog); INVOLVED IN cell motility (ortholog); mechanosensory behavior (ortholog); spermatid development (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN manchette (ortholog); microtubule cytoskeleton (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554194,795,953 - 4,852,398 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554194,732,467 - 4,858,872 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Strbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554194,795,953 - 4,852,398 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554194,732,467 - 4,858,872 (+)NCBIChiLan1.0ChiLan1.0
STRBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389123,109,494 - 123,268,586 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9123,109,500 - 123,268,586 (-)EnsemblGRCh38hg38GRCh38
GRCh379125,883,548 - 126,030,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,927,139 - 125,070,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 349122,966,873 - 123,110,397NCBI
Celera996,532,171 - 96,615,626 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef995,498,948 - 95,645,951 (-)NCBIHuRef
CHM1_19126,032,225 - 126,179,120 (-)NCBICHM1_1
T2T-CHM13v2.09135,300,815 - 135,465,770 (-)NCBIT2T-CHM13v2.0
Strbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,459,880 - 37,593,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,373,240 - 37,593,871 (-)EnsemblGRCm39 Ensembl
GRCm38237,569,868 - 37,703,878 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,483,228 - 37,703,859 (-)EnsemblGRCm38mm10GRCm38
MGSCv37237,425,388 - 37,502,805 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36237,305,237 - 37,469,228 (-)NCBIMGSCv36mm8
Celera237,255,231 - 37,332,594 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Strbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,738,096 - 41,879,054 (-)NCBIGRCr8
mRatBN7.2321,328,310 - 21,467,753 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,337,855 - 21,414,949 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx324,809,843 - 24,883,207 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,394,801 - 33,468,169 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,205,741 - 31,279,169 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0321,817,680 - 21,956,988 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl321,828,298 - 21,904,270 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0327,058,852 - 27,186,405 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4317,338,337 - 17,411,975 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1317,235,208 - 17,308,204 (-)NCBI
Celera319,776,985 - 19,850,280 (-)NCBICelera
Cytogenetic Map3q11NCBI
STRBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,081,061 - 16,239,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,083,338 - 16,235,943 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0994,249,017 - 94,395,796 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19122,581,566 - 122,645,198 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9122,586,575 - 122,640,167 (-)Ensemblpanpan1.1panPan2
STRBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1959,543,172 - 59,689,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl959,614,129 - 59,689,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha958,737,579 - 58,884,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0960,462,224 - 60,609,435 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl960,461,624 - 60,609,432 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1959,220,684 - 59,367,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0959,536,175 - 59,682,512 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0959,628,568 - 59,775,402 (+)NCBIUU_Cfam_GSD_1.0
Strbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947191,823,427 - 191,927,414 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648711,592,008 - 11,647,098 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648711,579,002 - 11,647,078 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1264,045,669 - 264,195,883 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11264,030,135 - 264,195,908 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21297,496,762 - 297,560,978 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STRBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11214,944,447 - 15,023,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1214,948,763 - 15,011,359 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660791,045,539 - 1,201,312 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Strbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476011,671,904 - 11,815,063 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000015913   ⟹   ENSCLAP00000015750
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554194,795,953 - 4,852,398 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000015914   ⟹   ENSCLAP00000015751
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554194,799,737 - 4,851,811 (+)Ensembl
RefSeq Acc Id: XM_005382505   ⟹   XP_005382562
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554194,732,467 - 4,852,398 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513147   ⟹   XP_013368601
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554194,732,475 - 4,856,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001233576
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554194,732,475 - 4,856,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_260609
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554194,732,475 - 4,858,872 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382562 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368601 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015750
  ENSCLAP00000015750.1
  ENSCLAP00000015751.1
RefSeq Acc Id: XP_005382562   ⟸   XM_005382505
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VLM9 (UniProtKB/TrEMBL),   A0A8C2VPE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368601   ⟸   XM_013513147
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VPE8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000015750   ⟸   ENSCLAT00000015913
Ensembl Acc Id: ENSCLAP00000015751   ⟸   ENSCLAT00000015914
Protein Domains
DRBM   DZF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010826 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015913 ENTREZGENE
  ENSCLAT00000015913.1 UniProtKB/TrEMBL
  ENSCLAT00000015914.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
InterPro dsRBD_dom UniProtKB/TrEMBL
  DZF_dom UniProtKB/TrEMBL
  DZF_dom_C UniProtKB/TrEMBL
  DZF_dom_N UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  STRBP_DSRM_1 UniProtKB/TrEMBL
NCBI Gene Strbp ENTREZGENE
PANTHER PTHR45762:SF1 UniProtKB/TrEMBL
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
Pfam dsrm UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
  DZF_C UniProtKB/TrEMBL
PROSITE DS_RBD UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
SMART DSRM UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
UniProt A0A8C2VLM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VPE8 ENTREZGENE, UniProtKB/TrEMBL