Slc16a3 (solute carrier family 16 member 3) - Rat Genome Database

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Gene: Slc16a3 (solute carrier family 16 member 3) Rattus norvegicus
Analyze
Symbol: Slc16a3
Name: solute carrier family 16 member 3
RGD ID: 620603
Description: Enables lactate:proton symporter activity. Involved in plasma membrane lactate transport. Located in plasma membrane. Orthologous to human SLC16A3 (solute carrier family 16 member 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-D; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MCT 3; MCT 4; Mct3; MCT4; monocarboxylate transporter; monocarboxylate transporter 3; monocarboxylate transporter 4; solute carrier family 16 (monocarboxylate transporter), member 3; solute carrier family 16 (monocarboxylic acid transporters), member 3; solute carrier family 16, member 3 (monocarboxylic acid transporter 4)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,712,328 - 106,756,168 (+)NCBIGRCr8
mRatBN7.210106,212,679 - 106,222,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,212,778 - 106,222,562 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,318,174 - 111,326,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,781,213 - 110,789,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,134,447 - 106,143,022 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,138,519 - 110,148,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,138,586 - 110,148,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,726,073 - 109,735,892 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,159,679 - 110,163,182 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,174,182 - 110,177,686 (+)NCBI
Celera10104,753,007 - 104,761,582 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a3Ratgeneralized epilepsy  ISOSLC16A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a3RatBreast Neoplasms  ISOSLC16A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22313602
Slc16a3RatStomach Neoplasms  ISOSLC16A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27224918

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a3Rat(-)-epigallocatechin 3-gallate multiple interactionsISOSLC16A3 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of SLC16A3 mRNACTDPMID:22079256
Slc16a3Rat1,2-dimethylhydrazine increases expressionISOSlc16a3 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of SLC16A3 mRNACTDPMID:22206623
Slc16a3Rat17alpha-ethynylestradiol multiple interactionsISOSlc16a3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SLC16A3 mRNACTDPMID:17942748
Slc16a3Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of SLC16A3 mRNACTDPMID:17557909
Slc16a3Rat17beta-estradiol decreases expressionISOSLC16A3 (Homo sapiens)6480464Estradiol results in decreased expression of SLC16A3 mRNACTDPMID:21632981
Slc16a3Rat17beta-estradiol increases expressionISOSLC16A3 (Homo sapiens)6480464Estradiol results in increased expression of SLC16A3 mRNACTDPMID:23019147
Slc16a3Rat17beta-estradiol multiple interactionsISOSLC16A3 (Homo sapiens)6480464[Estradiol binds to ESR2 protein] which results in increased expression of SLC16A3 mRNACTDPMID:20404318
Slc16a3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSlc16a3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SLC16A3 mRNACTDPMID:17942748
Slc16a3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOSlc16a3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of SLC16A3 mRNACTDPMID:19770486 and PMID:19933214
Slc16a3Rat2,4-D decreases expressionEXP 64804642 and 4-Dichlorophenoxyacetic Acid results in decreased expression of SLC16A3 mRNACTDPMID:23538319
Slc16a3Rat2,4-D increases expressionEXP 64804642 and 4-Dichlorophenoxyacetic Acid results in increased expression of SLC16A3 mRNACTDPMID:23538319
Slc16a3Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOSLC16A3 (Homo sapiens)64804642 more ...CTDPMID:26705709
Slc16a3Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOSlc16a3 (Mus musculus)64804642 more ...CTDPMID:38648751
Slc16a3Rat2,6-dimethoxyphenol multiple interactionsISOSLC16A3 (Homo sapiens)6480464[Furaldehyde co-treated with pyrogallol 1 more ...CTDPMID:38598786
Slc16a3Rat2-hydroxypropanoic acid multiple interactionsISOSLC16A3 (Homo sapiens)6480464SLC16A3 protein affects the reaction [Lactic Acid results in decreased expression of SEMA3A protein] more ...CTDPMID:37611839
Slc16a3Rat3,3',5-triiodo-L-thyronine increases expressionISOSLC16A3 (Homo sapiens)6480464Triiodothyronine results in increased expression of SLC16A3 mRNACTDPMID:15507505
Slc16a3Rat4,4'-sulfonyldiphenol decreases expressionISOSLC16A3 (Homo sapiens)6480464bisphenol S results in decreased expression of SLC16A3 mRNACTDPMID:27685785
Slc16a3Rat5-aza-2'-deoxycytidine affects expressionISOSLC16A3 (Homo sapiens)6480464Decitabine affects the expression of SLC16A3 mRNACTDPMID:23300844
Slc16a3Rat5-aza-2'-deoxycytidine increases expressionISOSLC16A3 (Homo sapiens)6480464Decitabine results in increased expression of SLC16A3 mRNACTDPMID:19194470
Slc16a3Rat5-methyl-4-oxido-2-pyrazin-4-iumcarboxylic acid increases expressionISOSLC16A3 (Homo sapiens)6480464acipimox results in increased expression of SLC16A3 mRNACTDPMID:25352640

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Biological Process
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Cellular Component
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Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a3Ratapical plasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratapical plasma membrane located_inISOSLC16A3 (Homo sapiens)1624291 PMID:31791063RGDPMID:31791063
Slc16a3Ratbasolateral plasma membrane located_inISSUniProtKB:O154271600115GO_REF:0000024UniProtGO_REF:0000024
Slc16a3Ratbasolateral plasma membrane is_active_inIBAMGI:1929519 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc16a3Ratbasolateral plasma membrane located_inIEAUniProtKB-SubCell:SL-00261600115GO_REF:0000044UniProtGO_REF:0000044
Slc16a3Ratbasolateral plasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratbasolateral plasma membrane located_inISOSLC16A3 (Homo sapiens)1624291 PMID:21199217 and PMID:31791063RGDPMID:21199217 and PMID:31791063
Slc16a3Ratlateral plasma membrane located_inISOSLC16A3 (Homo sapiens)1624291 PMID:26854723RGDPMID:26854723
Slc16a3Ratlateral plasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratmembrane located_inIEAInterPro:IPR0047431600115GO_REF:0000002InterProGO_REF:0000002
Slc16a3Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc16a3Ratnuclear membrane located_inISOSLC16A3 (Homo sapiens)1624291 RGDGO_REF:0000052
Slc16a3Ratnuclear membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratplasma membrane located_inISOSLC16A3 (Homo sapiens)1624291 PMID:10921872 and PMID:28112518RGDGO_REF:0000052 more ...
Slc16a3Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Slc16a3Ratplasma membrane is_active_inIEAUniProtKB:P57787 and ensembl:ENSMUSP000001258461600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratplasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratplasma membrane is_active_inISOSlc16a3 (Mus musculus)1624291 PMID:18385447 and PMID:31837519RGDPMID:18385447 and PMID:31837519
Slc16a3Ratplasma membrane is_active_inIBAFB:FBgn0033028 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc16a3Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a3Ratlactate transmembrane transporter activity enablesIEAUniProtKB:P57787 and ensembl:ENSMUSP000001258461600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratlactate transmembrane transporter activity enablesISOSlc16a3 (Mus musculus)1624291MGI:6467009 PMID:31837519RGDPMID:31837519
Slc16a3Ratlactate:proton symporter activity enablesISOSLC16A3 (Homo sapiens)1624291 PMID:11101640RGDPMID:11101640
Slc16a3Ratlactate:proton symporter activity enablesIBAPANTHER:PTN002603643 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc16a3Ratlactate:proton symporter activity enablesIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratlactate:proton symporter activity enablesIDA 152995558PMID:10926847UniProt 
Slc16a3Ratmonocarboxylic acid transmembrane transporter activity enablesIEAInterPro:IPR0047431600115GO_REF:0000002InterProGO_REF:0000002
Slc16a3Ratprotein binding enablesISOSLC16A3 (Homo sapiens)1624291UniProtKB:P26453 more ...RGDPMID:10921872 more ...
Slc16a3Ratpyruvate transmembrane transporter activity enablesISOSLC16A3 (Homo sapiens)1624291 PMID:31719150RGDPMID:31719150
Slc16a3Ratpyruvate transmembrane transporter activity enablesIEAUniProtKB:O15427 and ensembl:ENSP000004624051600115GO_REF:0000107EnsemblGO_REF:0000107
Slc16a3Ratpyruvate transmembrane transporter activity enablesISSUniProtKB:O154271600115GO_REF:0000024UniProtGO_REF:0000024
Slc16a3Ratsymporter activity enablesIEAUniProtKB-KW:KW-07691600115GO_REF:0000043UniProtGO_REF:0000043
Slc16a3Rattransmembrane transporter activity enablesIEAInterPro:IPR011701 and InterPro:IPR0208461600115GO_REF:0000002InterProGO_REF:0000002
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Reference Title
Reference Citation
1. A novel postsynaptic density protein: the monocarboxylate transporter MCT2 is co-localized with delta-glutamate receptors in postsynaptic densities of parallel fiber-Purkinje cell synapses. Bergersen L, etal., Exp Brain Res. 2001 Feb;136(4):523-34.
2. The low-affinity monocarboxylate transporter MCT4 is adapted to the export of lactate in highly glycolytic cells. Dimmer KS, etal., Biochem J. 2000 Aug 15;350 Pt 1:219-27.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. CD147 is tightly associated with lactate transporters MCT1 and MCT4 and facilitates their cell surface expression. Kirk P, etal., EMBO J. 2000 Aug 1;19(15):3896-904.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. AR-C155858 is a potent inhibitor of monocarboxylate transporters MCT1 and MCT2 that binds to an intracellular site involving transmembrane helices 7-10. Ovens MJ, etal., Biochem J. 2010 Jan 15;425(3):523-30. doi: 10.1042/BJ20091515.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Lactic acid efflux from white skeletal muscle is catalyzed by the monocarboxylate transporter isoform MCT3. Wilson MC, etal., J Biol Chem 1998 Jun 26;273(26):15920-6.
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PMID:12477932   PMID:15917240   PMID:18523157   PMID:20300744   PMID:21297988   PMID:21376239   PMID:21512297   PMID:21741392   PMID:22658674   PMID:23344966   PMID:23886299   PMID:24464262  
PMID:24610532   PMID:25146899   PMID:25827488   PMID:26831515   PMID:26996590   PMID:29249221   PMID:31578706   PMID:31837519   PMID:33625690  



Slc16a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,712,328 - 106,756,168 (+)NCBIGRCr8
mRatBN7.210106,212,679 - 106,222,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,212,778 - 106,222,562 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,318,174 - 111,326,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,781,213 - 110,789,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,134,447 - 106,143,022 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,138,519 - 110,148,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,138,586 - 110,148,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,726,073 - 109,735,892 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,159,679 - 110,163,182 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,174,182 - 110,177,686 (+)NCBI
Celera10104,753,007 - 104,761,582 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
SLC16A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,217,934 - 82,240,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,217,934 - 82,261,129 (+)EnsemblGRCh38hg38GRCh38
GRCh371780,186,311 - 80,197,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,779,582 - 77,790,658 (+)NCBINCBI36Build 36hg18NCBI36
Build 341777,780,235 - 77,790,640NCBI
Celera1776,780,516 - 76,791,586 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,585,945 - 75,596,959 (+)NCBIHuRef
CHM1_11780,272,024 - 80,283,105 (+)NCBICHM1_1
T2T-CHM13v2.01783,097,177 - 83,108,820 (+)NCBIT2T-CHM13v2.0
Slc16a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,839,310 - 120,849,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,839,306 - 120,851,694 (+)EnsemblGRCm39 Ensembl
GRCm3811120,948,484 - 120,959,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,948,480 - 120,960,868 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711120,809,798 - 120,820,314 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,764,574 - 120,775,090 (+)NCBIMGSCv36mm8
Celera11132,685,655 - 132,696,171 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.73NCBI
Slc16a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506935,783 - 945,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955506935,783 - 945,014 (-)NCBIChiLan1.0ChiLan1.0
SLC16A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,768,145 - 98,779,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,669,708 - 103,680,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,638,030 - 76,649,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,458,711 - 82,462,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,458,737 - 82,461,721 (+)Ensemblpanpan1.1panPan2
SLC16A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19109,557 - 119,179 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9110,345 - 117,352 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9712,817 - 724,127 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09704,211 - 715,519 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9704,661 - 710,915 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19729,268 - 740,577 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09859,232 - 870,540 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09934,334 - 945,639 (-)NCBIUU_Cfam_GSD_1.0
Slc16a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602690,616 - 698,683 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,716,935 - 5,721,343 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,715,234 - 5,721,343 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12796,883 - 803,555 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112796,882 - 807,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212957,853 - 967,564 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,146,799 - 74,157,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,150,110 - 74,158,112 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,743,496 - 45,754,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,022,034 - 11,031,060 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,022,997 - 11,031,578 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc16a3
30 total Variants

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:74
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000054939
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat

1 to 10 of 40 rows
UniSTS:461932  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210106,220,184 - 106,220,751 (+)MAPPERmRatBN7.2
Rnor_6.010110,145,981 - 110,146,547NCBIRnor6.0
Rnor_5.010109,733,513 - 109,734,079UniSTSRnor5.0
RGSC_v3.410110,160,805 - 110,161,371UniSTSRGSC3.4
Celera10104,759,205 - 104,759,771UniSTS
Cytogenetic Map10q32.3UniSTS
UniSTS:461931  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210106,220,184 - 106,220,720 (+)MAPPERmRatBN7.2
Rnor_6.010110,145,981 - 110,146,516NCBIRnor6.0
Rnor_5.010109,733,513 - 109,734,048UniSTSRnor5.0
RGSC_v3.410110,160,805 - 110,161,340UniSTSRGSC3.4
Celera10104,759,205 - 104,759,740UniSTS
Cytogenetic Map10q32.3UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000054939   ⟹   ENSRNOP00000051822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,213,987 - 106,222,562 (+)Ensembl
Rnor_6.0 Ensembl10110,139,783 - 110,148,358 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086096   ⟹   ENSRNOP00000069286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,212,778 - 106,222,562 (+)Ensembl
Rnor_6.0 Ensembl10110,138,586 - 110,148,358 (+)Ensembl
RefSeq Acc Id: NM_030834   ⟹   NP_110461
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,712,328 - 106,720,903 (+)NCBI
mRatBN7.210106,213,987 - 106,222,562 (+)NCBI
Rnor_6.010110,139,783 - 110,148,358 (+)NCBI
Rnor_5.010109,726,073 - 109,735,892 (+)NCBI
RGSC_v3.410110,159,679 - 110,163,182 (+)RGD
Celera10104,753,007 - 104,761,582 (+)RGD
Sequence:
RefSeq Acc Id: XM_063269934   ⟹   XP_063126004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,717,423 - 106,756,168 (+)NCBI
RefSeq Acc Id: XM_063269935   ⟹   XP_063126005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,717,423 - 106,756,168 (+)NCBI
RefSeq Acc Id: NP_110461   ⟸   NM_030834
- UniProtKB: O35910 (UniProtKB/Swiss-Prot),   B4F761 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051822   ⟸   ENSRNOT00000054939
Ensembl Acc Id: ENSRNOP00000069286   ⟸   ENSRNOT00000086096
RefSeq Acc Id: XP_063126005   ⟸   XM_063269935
- Peptide Label: isoform X1
- UniProtKB: O35910 (UniProtKB/Swiss-Prot),   B4F761 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126004   ⟸   XM_063269934
- Peptide Label: isoform X1
- UniProtKB: O35910 (UniProtKB/Swiss-Prot),   B4F761 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-O35910-F1-model_v2 AlphaFold O35910 1-471 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697995
Promoter ID:EPDNEW_R8506
Type:multiple initiation site
Name:Slc16a3_1
Description:solute carrier family 16 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010110,138,570 - 110,138,630EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-22377 BioCyc
Ensembl Genes ENSRNOG00000036677 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000054939 ENTREZGENE
  ENSRNOT00000054939.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
InterPro MCT UniProtKB/Swiss-Prot
  MFS UniProtKB/Swiss-Prot
  MFS_dom UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  Proton-linked_MCT UniProtKB/Swiss-Prot
KEGG Report rno:80878 UniProtKB/Swiss-Prot
NCBI Gene 80878 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/Swiss-Prot
  PTHR11360:SF27 UniProtKB/Swiss-Prot
Pfam MFS_1 UniProtKB/Swiss-Prot
PhenoGen Slc16a3 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000036677 RatGTEx
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
UniProt A0A8L2R0R3_RAT UniProtKB/TrEMBL
  B4F761 ENTREZGENE, UniProtKB/TrEMBL
  MOT4_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc16a3  solute carrier family 16 member 3  Slc16a3  solute carrier family 16 (monocarboxylate transporter), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc16a3  solute carrier family 16 (monocarboxylate transporter), member 3  Slc16a3  solute carrier family 16, member 3 (monocarboxylic acid transporter 4)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc16a3  solute carrier family 16, member 3 (monocarboxylic acid transporter 4)  Slc16a3  solute carrier family 16 (monocarboxylic acid transporters), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc16a3  solute carrier family 16 (monocarboxylic acid transporters), member 3    monocarboxylate transporter  Name updated 1299863 APPROVED
2004-09-10 Slc16a3  monocarboxylate transporter  Mct3    Symbol and Name updated 1299863 APPROVED
2002-08-07 Mct3  monocarboxylate transporter      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in all muscle fibers, and in tissues requiring rapid lactic acid efflux 633258