SLC16A3 (solute carrier family 16 member 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC16A3 (solute carrier family 16 member 3) Chlorocebus sabaeus
Analyze
Symbol: SLC16A3
Name: solute carrier family 16 member 3
RGD ID: 18739208
Description: ENCODES a protein that exhibits lactate transmembrane transporter activity (inferred); lactate:proton symporter activity (inferred); monocarboxylic acid transmembrane transporter activity (inferred); INVOLVED IN plasma membrane lactate transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); generalized epilepsy (ortholog); Stomach Neoplasms (ortholog); FOUND IN apical plasma membrane (inferred); basolateral plasma membrane (inferred); lateral plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,146,799 - 74,157,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,150,110 - 74,158,112 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,743,496 - 45,754,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC16A3Green Monkeygeneralized epilepsy  ISOSLC16A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC16A3Green MonkeyBreast Neoplasms  ISOSLC16A3 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22313602
SLC16A3Green MonkeyStomach Neoplasms  ISOSLC16A3 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:27224918


Biological Process
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC16A3Green Monkeylactate transmembrane transport involved_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeymonocarboxylic acid transport involved_inIEAPANTHER:PTN000145064150520179 TreeGrafterGO_REF:0000118
SLC16A3Green Monkeymonocarboxylic acid transport involved_inIEAARBA:ARBA00028410150520179 UniProtGO_REF:0000117
SLC16A3Green Monkeymonocarboxylic acid transport involved_inIEAInterPro:IPR004743150520179 InterProGO_REF:0000002
SLC16A3Green Monkeyplasma membrane lactate transport involved_inISOSlc16a3 (Rattus norvegicus)9068941PMID:10926847UniProtPMID:10926847 and REF_RGD_ID:152995558
SLC16A3Green Monkeyplasma membrane lactate transport  ISOSlc16a3 (Rattus norvegicus)9068941 RGDPMID:19929853 and REF_RGD_ID:7327222
SLC16A3Green Monkeypyruvate catabolic process involved_inIEAUniProtKB:P57787 and ensembl:ENSMUSP00000125846150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeypyruvate transmembrane transport involved_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeytransmembrane transport involved_inIEAInterPro:IPR011701150520179 InterProGO_REF:0000002
1 to 9 of 9 rows

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC16A3Green Monkeyapical plasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeybasolateral plasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeybasolateral plasma membrane located_inIEAPANTHER:PTN000145064150520179 TreeGrafterGO_REF:0000118
SLC16A3Green Monkeylateral plasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeymembrane located_inIEAInterPro:IPR004743150520179 InterProGO_REF:0000002
SLC16A3Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLC16A3Green Monkeynuclear membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeyplasma membrane is_active_inIEAUniProtKB:P57787 and ensembl:ENSMUSP00000125846150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeyplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
SLC16A3Green Monkeyplasma membrane located_inIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
1 to 10 of 10 rows

Molecular Function
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC16A3Green Monkeylactate transmembrane transporter activity enablesIEAUniProtKB:P57787 and ensembl:ENSMUSP00000125846150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeylactate:proton symporter activity enablesIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeylactate:proton symporter activity enablesIEAPANTHER:PTN000145064150520179 TreeGrafterGO_REF:0000118
SLC16A3Green Monkeymonocarboxylic acid transmembrane transporter activity enablesIEAInterPro:IPR004743150520179 InterProGO_REF:0000002
SLC16A3Green Monkeymonocarboxylic acid transmembrane transporter activity enablesIEAPANTHER:PTN000145064150520179 TreeGrafterGO_REF:0000118
SLC16A3Green Monkeyprotein binding enablesISOUniProtKB:Q129599068941 PMID:30126976IntActPMID:30126976
SLC16A3Green Monkeyprotein binding enablesISOUniProtKB:P48165 more ...9068941 PMID:32296183IntActPMID:32296183
SLC16A3Green Monkeyprotein binding enablesISOUniProtKB:Q86WQ0 more ...9068941 PMID:25416956IntActPMID:25416956
SLC16A3Green Monkeyprotein binding enablesISOUniProtKB:P264539068941 PMID:10921872UniProtPMID:10921872
SLC16A3Green Monkeypyruvate transmembrane transporter activity enablesIEAUniProtKB:O15427 and ensembl:ENSP00000462405150520179 EnsemblGO_REF:0000107
SLC16A3Green Monkeysymporter activity enablesIEAUniProtKB-KW:KW-0769150520179 UniProtGO_REF:0000043
SLC16A3Green Monkeytransmembrane transporter activity enablesIEAInterPro:IPR011701 and InterPro:IPR020846150520179 InterProGO_REF:0000002
1 to 12 of 12 rows

PMID:22301074   PMID:30032202  



SLC16A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,146,799 - 74,157,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,150,110 - 74,158,112 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,743,496 - 45,754,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC16A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,217,934 - 82,240,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,217,934 - 82,261,129 (+)EnsemblGRCh38hg38GRCh38
GRCh371780,186,311 - 80,197,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,779,582 - 77,790,658 (+)NCBINCBI36Build 36hg18NCBI36
Build 341777,780,235 - 77,790,640NCBI
Celera1776,780,516 - 76,791,586 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,585,945 - 75,596,959 (+)NCBIHuRef
CHM1_11780,272,024 - 80,283,105 (+)NCBICHM1_1
T2T-CHM13v2.01783,097,177 - 83,108,820 (+)NCBIT2T-CHM13v2.0
Slc16a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,839,310 - 120,849,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,839,306 - 120,851,694 (+)EnsemblGRCm39 Ensembl
GRCm3811120,948,484 - 120,959,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,948,480 - 120,960,868 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711120,809,798 - 120,820,314 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,764,574 - 120,775,090 (+)NCBIMGSCv36mm8
Celera11132,685,655 - 132,696,171 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.73NCBI
Slc16a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,712,328 - 106,756,168 (+)NCBIGRCr8
mRatBN7.210106,212,679 - 106,222,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,212,778 - 106,222,562 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,318,174 - 111,326,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,781,213 - 110,789,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,134,447 - 106,143,022 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,138,519 - 110,148,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,138,586 - 110,148,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,726,073 - 109,735,892 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,159,679 - 110,163,182 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,174,182 - 110,177,686 (+)NCBI
Celera10104,753,007 - 104,761,582 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Slc16a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506935,783 - 945,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955506935,783 - 945,014 (-)NCBIChiLan1.0ChiLan1.0
SLC16A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,768,145 - 98,779,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,669,708 - 103,680,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,638,030 - 76,649,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,458,711 - 82,462,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,458,737 - 82,461,721 (+)Ensemblpanpan1.1panPan2
SLC16A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19109,557 - 119,179 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9110,345 - 117,352 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9712,817 - 724,127 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09704,211 - 715,519 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9704,661 - 710,915 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19729,268 - 740,577 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09859,232 - 870,540 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09934,334 - 945,639 (-)NCBIUU_Cfam_GSD_1.0
Slc16a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602690,616 - 698,683 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,716,935 - 5,721,343 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,715,234 - 5,721,343 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12796,883 - 803,555 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112796,882 - 807,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212957,853 - 967,564 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc16a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,022,034 - 11,031,060 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,022,997 - 11,031,578 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in SLC16A3
235 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000000161   ⟹   ENSCSAP00000015892
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1674,150,110 - 74,158,112 (+)Ensembl
RefSeq Acc Id: XM_008013342   ⟹   XP_008011533
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11674,146,954 - 74,157,626 (+)NCBI
Vero_WHO_p1.0NW_02366607745,744,103 - 45,754,340 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013345   ⟹   XP_008011536
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11674,146,800 - 74,157,626 (+)NCBI
Vero_WHO_p1.0NW_02366607745,743,496 - 45,754,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013346   ⟹   XP_008011537
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11674,147,491 - 74,157,626 (+)NCBI
Vero_WHO_p1.0NW_02366607745,749,791 - 45,754,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037993431   ⟹   XP_037849359
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607745,747,201 - 45,754,340 (+)NCBI
RefSeq Acc Id: XM_037993432   ⟹   XP_037849360
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607745,748,036 - 45,754,341 (+)NCBI
Protein RefSeqs XP_008011533 (Get FASTA)   NCBI Sequence Viewer  
  XP_008011536 (Get FASTA)   NCBI Sequence Viewer  
  XP_008011537 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849359 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849360 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015892.1
RefSeq Acc Id: XP_008011536   ⟸   XM_008013345
- UniProtKB: A0A0D9S4V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008011533   ⟸   XM_008013342
- UniProtKB: A0A0D9S4V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008011537   ⟸   XM_008013346
- UniProtKB: A0A0D9S4V3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000015892   ⟸   ENSCSAT00000000161
RefSeq Acc Id: XP_037849359   ⟸   XM_037993431
- UniProtKB: A0A0D9S4V3 (UniProtKB/TrEMBL)



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000002144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000161.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MCT UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Proton-linked_MCT UniProtKB/TrEMBL
NCBI Gene SLC16A3 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  PTHR11360:SF27 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9S4V3 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows