Nrxn3 (neurexin 3) - Rat Genome Database

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Gene: Nrxn3 (neurexin 3) Rattus norvegicus
Analyze
Symbol: Nrxn3
Name: neurexin 3
RGD ID: 620212
Description: Predicted to enable calcium channel regulator activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; neurotransmitter receptor localization to postsynaptic specialization membrane; and postsynaptic density assembly. Predicted to act upstream of or within neurotransmitter secretion and synapse assembly. Predicted to be located in cell projection and presynaptic membrane. Predicted to be part of protein-containing complex. Predicted to be active in GABA-ergic synapse; glutamatergic synapse; and presynaptic active zone membrane. Human ortholog(s) of this gene implicated in alcohol dependence. Orthologous to human NRXN3 (neurexin 3); INTERACTS WITH (S)-nicotine; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC108351353; neurexin III; neurexin III-alpha; neurexin-3; neurexin-3-alpha; uncharacterized LOC108351353
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86113,372,667 - 115,004,073 (+)NCBIGRCr8
mRatBN7.26107,641,760 - 109,272,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,641,780 - 109,272,044 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6107,805,798 - 109,421,561 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06108,104,553 - 109,720,323 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06107,474,320 - 109,090,079 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06112,133,204 - 114,069,589 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6112,133,204 - 114,067,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06121,410,790 - 122,710,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06123,170,189 - 123,337,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46112,273,955 - 113,905,437 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16112,277,485 - 113,908,968 (+)NCBI
Celera6105,447,534 - 107,042,695 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP,ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbamazepine  (ISO)
cerium trichloride  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenamidone  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
morphine  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (EXP)
nickel atom  (ISO)
nicotine  (EXP,ISO)
O-methyleugenol  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (ISO)
permethrin  (EXP)
potassium chloride  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
testosterone  (ISO)
theophylline  (ISO)
toluene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Association of neurexin 3 polymorphisms with smoking behavior. Docampo E, etal., Genes Brain Behav. 2012 Aug;11(6):704-11. doi: 10.1111/j.1601-183X.2012.00815.x. Epub 2012 Jul 17.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. CASK: a novel dlg/PSD95 homolog with an N-terminal calmodulin-dependent protein kinase domain identified by interaction with neurexins. Hata Y, etal., J Neurosci 1996 Apr 15;16(8):2488-94.
4. Neurexin 3 polymorphisms are associated with alcohol dependence and altered expression of specific isoforms. Hishimoto A, etal., Hum Mol Genet. 2007 Dec 1;16(23):2880-91. doi: 10.1093/hmg/ddm247. Epub 2007 Sep 4.
5. Structures, alternative splicing, and neurexin binding of multiple neuroligins. Ichtchenko K, etal., J Biol Chem 1996 Feb 2;271(5):2676-82.
6. Developmental expression of the neuroligins and neurexins in fragile X mice. Lai JK, etal., J Comp Neurol. 2016 Mar 1;524(4):807-28. doi: 10.1002/cne.23868. Epub 2015 Sep 2.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Association of a polymorphism in the NRXN3 gene with the degree of smoking in schizophrenia: a preliminary study. Novak G, etal., World J Biol Psychiatry. 2009;10(4 Pt 3):929-35. doi: 10.1080/15622970903079499.
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Neurexin III alpha: extensive alternative splicing generates membrane-bound and soluble forms. Ushkaryov YA and Sudhof TC, Proc Natl Acad Sci U S A 1993 Jul 15;90(14):6410-4.
14. The contribution of rare and common variants in 30 genes to risk nicotine dependence. Yang J, etal., Mol Psychiatry. 2015 Nov;20(11):1467-78. doi: 10.1038/mp.2014.156. Epub 2014 Dec 2.
Additional References at PubMed
PMID:7695896   PMID:9707552   PMID:9856994   PMID:11470830   PMID:12827191   PMID:18755801   PMID:19816407   PMID:22209245   PMID:24613359   PMID:25931508   PMID:26030848  


Genomics

Comparative Map Data
Nrxn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86113,372,667 - 115,004,073 (+)NCBIGRCr8
mRatBN7.26107,641,760 - 109,272,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,641,780 - 109,272,044 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6107,805,798 - 109,421,561 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06108,104,553 - 109,720,323 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06107,474,320 - 109,090,079 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06112,133,204 - 114,069,589 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6112,133,204 - 114,067,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06121,410,790 - 122,710,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06123,170,189 - 123,337,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46112,273,955 - 113,905,437 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16112,277,485 - 113,908,968 (+)NCBI
Celera6105,447,534 - 107,042,695 (+)NCBICelera
Cytogenetic Map6q31NCBI
NRXN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381478,170,373 - 79,868,291 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1478,170,373 - 79,868,291 (+)EnsemblGRCh38hg38GRCh38
GRCh371478,636,716 - 80,334,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361477,939,846 - 79,400,515 (+)NCBINCBI36Build 36hg18NCBI36
Build 341478,815,434 - 79,400,511NCBI
Celera1458,907,852 - 60,368,826 (+)NCBICelera
Cytogenetic Map14q24.3-q31.1NCBI
HuRef1458,802,637 - 60,499,988 (+)NCBIHuRef
CHM1_11478,576,541 - 80,274,856 (+)NCBICHM1_1
T2T-CHM13v2.01472,379,419 - 74,078,363 (+)NCBIT2T-CHM13v2.0
Nrxn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391288,689,454 - 90,301,709 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1288,689,646 - 90,301,709 (+)EnsemblGRCm39 Ensembl
GRCm381288,722,701 - 90,334,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1288,722,876 - 90,334,935 (+)EnsemblGRCm38mm10GRCm38
MGSCv371290,191,834 - 91,573,375 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361289,466,878 - 90,738,084 (+)NCBIMGSCv36mm8
Celera1290,282,588 - 91,666,317 (+)NCBICelera
Cytogenetic Map12D3NCBI
cM Map1242.94NCBI
Nrxn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554382,097,229 - 3,583,937 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554382,023,863 - 3,583,671 (+)NCBIChiLan1.0ChiLan1.0
NRXN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21579,213,206 - 80,955,620 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11478,429,850 - 80,172,124 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01458,729,335 - 60,444,769 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,929,795 - 79,625,895 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1478,002,036 - 79,619,696 (+)Ensemblpanpan1.1panPan2
NRXN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,848,045 - 51,609,368 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,850,582 - 52,383,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha850,534,741 - 51,071,073 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha851,427,552 - 51,944,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0851,081,918 - 52,615,277 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl851,081,907 - 52,613,233 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,762,857 - 52,304,660 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,774,523 - 52,306,862 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0851,166,938 - 52,699,333 (+)NCBIUU_Cfam_GSD_1.0
Nrxn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864023,602,657 - 25,148,845 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,985,998 - 8,466,466 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,920,133 - 8,466,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRXN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7101,604,569 - 101,938,298 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17101,132,780 - 102,779,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27107,155,365 - 107,960,174 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NRXN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12455,443,640 - 57,184,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605343,631,911 - 44,942,614 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrxn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473422,163,166 - 23,692,660 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473422,161,837 - 23,757,367 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nrxn3
9428 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:316
Count of miRNA genes:178
Interacting mature miRNAs:214
Transcripts:ENSRNOT00000064872, ENSRNOT00000073666
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat

Markers in Region
D6Rat48  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,150,645 - 109,150,773 (+)MAPPERmRatBN7.2
Rnor_6.06113,946,009 - 113,946,136NCBIRnor6.0
Rnor_5.06123,218,000 - 123,218,127UniSTSRnor5.0
RGSC_v3.46113,762,878 - 113,763,006RGDRGSC3.4
RGSC_v3.46113,762,879 - 113,763,006UniSTSRGSC3.4
RGSC_v3.16113,766,410 - 113,766,537RGD
Celera6106,922,615 - 106,922,740UniSTS
RH 3.4 Map6752.4RGD
RH 3.4 Map6752.4UniSTS
RH 2.0 Map6960.9RGD
FHH x ACI Map672.48RGD
Cytogenetic Map6q31UniSTS
D6Rat66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,640,035 - 107,640,241 (+)MAPPERmRatBN7.2
Rnor_6.06112,131,256 - 112,131,461NCBIRnor6.0
Rnor_5.06121,408,842 - 121,409,047UniSTSRnor5.0
RGSC_v3.46112,272,006 - 112,272,212RGDRGSC3.4
RGSC_v3.46112,272,007 - 112,272,212UniSTSRGSC3.4
RGSC_v3.16112,275,537 - 112,275,743RGD
Celera6105,445,586 - 105,445,791UniSTS
SHRSP x BN Map665.7398UniSTS
SHRSP x BN Map665.7398RGD
FHH x ACI Map669.11RGD
Cytogenetic Map6q31UniSTS
D6Rat216  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.06112,151,249 - 112,151,615NCBIRnor6.0
Rnor_5.06121,428,835 - 121,429,201UniSTSRnor5.0
RGSC_v3.46112,291,999 - 112,292,399RGDRGSC3.4
RGSC_v3.46112,292,000 - 112,292,399UniSTSRGSC3.4
RGSC_v3.16112,295,389 - 112,296,009RGD
Celera6105,465,566 - 105,465,965UniSTS
FHH x ACI Map669.11UniSTS
FHH x ACI Map669.11RGD
Cytogenetic Map6q31UniSTS
D6Rat191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,657,913 - 107,658,155 (+)MAPPERmRatBN7.2
Rnor_6.06112,149,132 - 112,149,373NCBIRnor6.0
Rnor_5.06121,426,718 - 121,426,959UniSTSRnor5.0
RGSC_v3.46112,289,882 - 112,290,123RGDRGSC3.4
RGSC_v3.46112,289,883 - 112,290,124UniSTSRGSC3.4
RGSC_v3.16112,293,406 - 112,293,969RGD
Celera6105,463,449 - 105,463,690UniSTS
RH 3.4 Map6746.1RGD
RH 3.4 Map6746.1UniSTS
RH 2.0 Map6969.8RGD
SHRSP x BN Map663.6898RGD
Cytogenetic Map6q31UniSTS
D6Got149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,711,301 - 107,711,416 (+)MAPPERmRatBN7.2
Rnor_6.06112,202,159 - 112,202,273NCBIRnor6.0
Rnor_5.06121,479,427 - 121,479,541UniSTSRnor5.0
RGSC_v3.46112,344,521 - 112,344,636RGDRGSC3.4
RGSC_v3.46112,344,522 - 112,344,636UniSTSRGSC3.4
RGSC_v3.16112,348,053 - 112,348,167RGD
Celera6105,516,290 - 105,516,404UniSTS
RH 3.4 Map6748.7UniSTS
RH 3.4 Map6748.7RGD
RH 2.0 Map6963.5RGD
Cytogenetic Map6q31UniSTS
D6Got144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,945,157 - 107,945,332 (+)MAPPERmRatBN7.2
Rnor_6.06112,436,538 - 112,436,712NCBIRnor6.0
Rnor_5.06121,713,495 - 121,713,669UniSTSRnor5.0
RGSC_v3.46112,584,059 - 112,584,234RGDRGSC3.4
RGSC_v3.46112,584,060 - 112,584,234UniSTSRGSC3.4
RGSC_v3.16112,587,591 - 112,587,765RGD
Celera6105,743,357 - 105,743,531UniSTS
RH 3.4 Map6750.0UniSTS
RH 3.4 Map6750.0RGD
RH 2.0 Map6966.3RGD
Cytogenetic Map6q31UniSTS
D6Got150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,387,206 - 108,387,444 (+)MAPPERmRatBN7.2
Rnor_6.06112,901,446 - 112,901,683NCBIRnor6.0
Rnor_5.06122,177,896 - 122,178,133UniSTSRnor5.0
RGSC_v3.46113,041,259 - 113,041,497RGDRGSC3.4
RGSC_v3.46113,041,260 - 113,041,497UniSTSRGSC3.4
RGSC_v3.16113,044,791 - 113,045,028RGD
Celera6106,177,209 - 106,177,446UniSTS
RH 3.4 Map6757.1RGD
RH 3.4 Map6757.1UniSTS
RH 2.0 Map6973.8RGD
Cytogenetic Map6q31UniSTS
D6Got145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,997,522 - 107,997,747 (+)MAPPERmRatBN7.2
Rnor_6.06112,489,132 - 112,489,356NCBIRnor6.0
Rnor_5.06121,766,089 - 121,766,313UniSTSRnor5.0
RGSC_v3.46112,637,621 - 112,637,846RGDRGSC3.4
RGSC_v3.46112,637,622 - 112,637,846UniSTSRGSC3.4
RGSC_v3.16112,641,153 - 112,641,377RGD
Celera6105,795,647 - 105,795,871UniSTS
RH 3.4 Map6748.3UniSTS
RH 3.4 Map6748.3RGD
RH 2.0 Map6973.9RGD
Cytogenetic Map6q31UniSTS
D6Got147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,925,741 - 108,926,011 (+)MAPPERmRatBN7.2
Rnor_6.06113,442,075 - 113,442,342NCBIRnor6.0
Rnor_5.06122,716,586 - 122,716,853UniSTSRnor5.0
RGSC_v3.46113,524,672 - 113,524,940RGDRGSC3.4
RGSC_v3.46113,524,673 - 113,524,940UniSTSRGSC3.4
RGSC_v3.16113,528,203 - 113,528,471RGD
Celera6106,700,816 - 106,701,063UniSTS
RH 3.4 Map6749.0UniSTS
RH 3.4 Map6749.0RGD
RH 2.0 Map6989.8RGD
Cytogenetic Map6q31UniSTS
D6Got155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,578,828 - 108,579,117 (+)MAPPERmRatBN7.2
Rnor_6.06113,095,432 - 113,095,720NCBIRnor6.0
Rnor_5.06122,370,089 - 122,370,377UniSTSRnor5.0
RGSC_v3.46113,175,945 - 113,176,234RGDRGSC3.4
RGSC_v3.46113,175,946 - 113,176,234UniSTSRGSC3.4
RGSC_v3.16113,179,477 - 113,179,765RGD
Celera6106,366,765 - 106,367,053UniSTS
RH 3.4 Map6748.9RGD
RH 3.4 Map6748.9UniSTS
Cytogenetic Map6q31UniSTS
D6Got200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,268,391 - 108,268,465 (+)MAPPERmRatBN7.2
Rnor_6.06112,783,391 - 112,783,464NCBIRnor6.0
Rnor_6.0664,671,168 - 64,671,241NCBIRnor6.0
Rnor_5.0674,252,249 - 74,252,322UniSTSRnor5.0
Rnor_5.06122,059,841 - 122,059,914UniSTSRnor5.0
RGSC_v3.46112,921,266 - 112,921,339UniSTSRGSC3.4
RGSC_v3.16112,924,796 - 112,924,869RGD
Celera6106,058,422 - 106,058,495UniSTS
Cytogenetic Map6q31UniSTS
BE108622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,925,489 - 108,925,641 (+)MAPPERmRatBN7.2
Rnor_6.06113,441,823 - 113,441,974NCBIRnor6.0
Rnor_5.06122,716,334 - 122,716,485UniSTSRnor5.0
RGSC_v3.46113,524,421 - 113,524,572UniSTSRGSC3.4
Celera6106,700,564 - 106,700,715UniSTS
RH 3.4 Map6750.8UniSTS
Cytogenetic Map6q31UniSTS
RH128451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,775,236 - 107,775,441 (+)MAPPERmRatBN7.2
Rnor_6.06112,266,679 - 112,266,883NCBIRnor6.0
Rnor_5.06121,543,947 - 121,544,151UniSTSRnor5.0
RGSC_v3.46112,409,413 - 112,409,617UniSTSRGSC3.4
Celera6105,580,175 - 105,580,379UniSTS
RH 3.4 Map6746.2UniSTS
Cytogenetic Map6q31UniSTS
RH144490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,478,474 - 108,478,601 (+)MAPPERmRatBN7.2
Rnor_6.06112,993,092 - 112,993,218NCBIRnor6.0
Rnor_5.06122,269,307 - 122,269,433UniSTSRnor5.0
Celera6106,268,272 - 106,268,398UniSTS
RH 3.4 Map6750.1UniSTS
Cytogenetic Map6q31UniSTS
RH144567  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,229,574 - 109,229,741 (+)MAPPERmRatBN7.2
Rnor_6.06114,026,198 - 114,026,364NCBIRnor6.0
Rnor_5.06123,295,954 - 123,296,120UniSTSRnor5.0
RGSC_v3.46113,845,559 - 113,845,725UniSTSRGSC3.4
Celera6107,001,452 - 107,001,618UniSTS
RH 3.4 Map6752.4UniSTS
Cytogenetic Map6q31UniSTS
BE101757  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,345,124 - 108,345,318 (+)MAPPERmRatBN7.2
Rnor_6.06112,859,619 - 112,859,812NCBIRnor6.0
Rnor_5.06122,136,069 - 122,136,262UniSTSRnor5.0
RGSC_v3.46112,998,661 - 112,998,854UniSTSRGSC3.4
Celera6106,135,153 - 106,135,346UniSTS
RH 3.4 Map6748.1UniSTS
Cytogenetic Map6q31UniSTS
BF386965  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,168,072 - 109,168,257 (+)MAPPERmRatBN7.2
Rnor_6.06113,963,436 - 113,963,620NCBIRnor6.0
Rnor_5.06123,235,427 - 123,235,611UniSTSRnor5.0
RGSC_v3.46113,780,506 - 113,780,690UniSTSRGSC3.4
Celera6106,940,040 - 106,940,224UniSTS
RH 3.4 Map6752.4UniSTS
Cytogenetic Map6q31UniSTS
BE102650  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,547,097 - 108,547,275 (+)MAPPERmRatBN7.2
Rnor_6.06113,061,307 - 113,061,484NCBIRnor6.0
Rnor_5.06122,337,332 - 122,337,509UniSTSRnor5.0
Celera6106,336,888 - 106,337,065UniSTS
RH 3.4 Map6752.6UniSTS
Cytogenetic Map6q31UniSTS
AW530543  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,244,326 - 109,244,516 (+)MAPPERmRatBN7.2
Rnor_6.06114,041,160 - 114,041,349NCBIRnor6.0
Rnor_5.06123,310,916 - 123,311,105UniSTSRnor5.0
RGSC_v3.46113,860,311 - 113,860,500UniSTSRGSC3.4
Celera6107,016,073 - 107,016,262UniSTS
RH 3.4 Map6752.4UniSTS
Cytogenetic Map6q31UniSTS
BE108105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,866,824 - 108,867,000 (+)MAPPERmRatBN7.2
Rnor_6.06113,383,329 - 113,383,504NCBIRnor6.0
Rnor_5.06122,657,529 - 122,657,704UniSTSRnor5.0
RGSC_v3.46113,465,394 - 113,465,569UniSTSRGSC3.4
Celera6106,648,100 - 106,648,275UniSTS
RH 3.4 Map6750.8UniSTS
Cytogenetic Map6q31UniSTS
BE115916  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,901,441 - 107,901,591 (+)MAPPERmRatBN7.2
Rnor_6.06112,392,762 - 112,392,911NCBIRnor6.0
Rnor_5.06121,669,719 - 121,669,868UniSTSRnor5.0
RGSC_v3.46112,540,349 - 112,540,498UniSTSRGSC3.4
Celera6105,706,457 - 105,706,606UniSTS
RH 3.4 Map6748.1UniSTS
Cytogenetic Map6q31UniSTS
AU048299  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,068,548 - 109,068,698 (+)MAPPERmRatBN7.2
Rnor_6.06113,869,476 - 113,869,625NCBIRnor6.0
Rnor_5.06123,143,046 - 123,143,195UniSTSRnor5.0
RGSC_v3.46113,669,334 - 113,669,483UniSTSRGSC3.4
Celera6106,841,094 - 106,841,243UniSTS
Cytogenetic Map6q31UniSTS
AU047113  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,422,726 - 108,422,884 (+)MAPPERmRatBN7.2
Rnor_6.06112,937,393 - 112,937,548NCBIRnor6.0
Rnor_5.06122,213,953 - 122,214,108UniSTSRnor5.0
RGSC_v3.46113,077,085 - 113,077,240UniSTSRGSC3.4
Celera6106,212,551 - 106,212,706UniSTS
Cytogenetic Map6q31UniSTS
RH138907  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,524,163 - 108,524,292 (+)MAPPERmRatBN7.2
Rnor_6.06113,038,506 - 113,038,634NCBIRnor6.0
Rnor_5.06122,314,531 - 122,314,659UniSTSRnor5.0
Celera6106,313,996 - 106,314,124UniSTS
RH 3.4 Map6756.1UniSTS
Cytogenetic Map6q31UniSTS
BE117867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,922,460 - 108,922,615 (+)MAPPERmRatBN7.2
Rnor_6.06113,438,960 - 113,439,114NCBIRnor6.0
Rnor_5.06122,713,471 - 122,713,625UniSTSRnor5.0
RGSC_v3.46113,521,558 - 113,521,712UniSTSRGSC3.4
Celera6106,697,813 - 106,697,967UniSTS
RH 3.4 Map6750.8UniSTS
Cytogenetic Map6q31UniSTS
BF416388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,137,350 - 109,137,588 (+)MAPPERmRatBN7.2
Rnor_6.06113,933,232 - 113,933,481NCBIRnor6.0
Rnor_5.06123,205,001 - 123,205,250UniSTSRnor5.0
RGSC_v3.46113,744,314 - 113,744,551UniSTSRGSC3.4
Celera6106,909,260 - 106,909,497UniSTS
RH 3.4 Map6755.1UniSTS
Cytogenetic Map6q31UniSTS
BF391590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26107,768,698 - 107,768,820 (+)MAPPERmRatBN7.2
Rnor_6.06112,259,679 - 112,259,800NCBIRnor6.0
Rnor_5.06121,536,947 - 121,537,068UniSTSRnor5.0
RGSC_v3.46112,402,370 - 112,402,491UniSTSRGSC3.4
Celera6105,573,699 - 105,573,820UniSTS
RH 3.4 Map6748.7UniSTS
Cytogenetic Map6q31UniSTS
BE115279  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26108,657,946 - 108,658,106 (+)MAPPERmRatBN7.2
Rnor_6.06113,174,537 - 113,174,696NCBIRnor6.0
Rnor_5.06122,449,170 - 122,449,329UniSTSRnor5.0
RGSC_v3.46113,254,939 - 113,255,098UniSTSRGSC3.4
Celera6106,438,812 - 106,438,971UniSTS
RH 3.4 Map6752.3UniSTS
Cytogenetic Map6q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64
Low 12 8 7 7 6 10 2
Below cutoff 2 11 47 33 15 33 8 10 2 31 29 5 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L14851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000031205   ⟹   ENSRNOP00000030966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,641,780 - 107,771,635 (+)Ensembl
Rnor_6.0 Ensembl6112,203,679 - 112,204,386 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000064872   ⟹   ENSRNOP00000060600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,712,822 - 109,270,725 (+)Ensembl
Rnor_6.0 Ensembl6113,898,420 - 114,067,055 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,641,780 - 109,272,044 (+)Ensembl
Rnor_6.0 Ensembl6112,133,204 - 114,067,564 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097486   ⟹   ENSRNOP00000087097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,641,780 - 109,260,405 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103009   ⟹   ENSRNOP00000085895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6108,751,174 - 109,272,044 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113245   ⟹   ENSRNOP00000094179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,641,781 - 109,272,044 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119992   ⟹   ENSRNOP00000092783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,641,780 - 109,270,725 (+)Ensembl
RefSeq Acc Id: NM_053817   ⟹   NP_446269
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,892 - 115,002,048 (+)NCBI
mRatBN7.26107,641,984 - 109,271,234 (+)NCBI
Rnor_6.06112,133,204 - 114,067,564 (+)NCBI
Rnor_5.06121,410,790 - 122,710,220 (+)NCBI
Rnor_5.06123,170,189 - 123,337,131 (+)NCBI
RGSC_v3.46112,273,955 - 113,905,437 (+)RGD
Celera6105,447,534 - 107,042,695 (+)RGD
Sequence:
RefSeq Acc Id: XM_008764733   ⟹   XP_008762955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86114,476,878 - 115,004,073 (+)NCBI
mRatBN7.26108,750,282 - 109,272,849 (+)NCBI
Rnor_6.06113,265,203 - 114,069,589 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111627   ⟹   XP_038967555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111631   ⟹   XP_038967559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111633   ⟹   XP_038967561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111634   ⟹   XP_038967562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111642   ⟹   XP_038967570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111643   ⟹   XP_038967571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111656   ⟹   XP_038967584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111657   ⟹   XP_038967585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111658   ⟹   XP_038967586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111659   ⟹   XP_038967587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111660   ⟹   XP_038967588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111661   ⟹   XP_038967589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,667 - 115,004,073 (+)NCBI
mRatBN7.26107,641,760 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111662   ⟹   XP_038967590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
mRatBN7.26107,641,761 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_039111663   ⟹   XP_038967591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86114,476,871 - 115,004,073 (+)NCBI
mRatBN7.26108,750,271 - 109,272,849 (+)NCBI
RefSeq Acc Id: XM_063261424   ⟹   XP_063117494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,374,498 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261425   ⟹   XP_063117495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261426   ⟹   XP_063117496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,374,944 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261427   ⟹   XP_063117497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261428   ⟹   XP_063117498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261429   ⟹   XP_063117499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261430   ⟹   XP_063117500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261431   ⟹   XP_063117501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261432   ⟹   XP_063117502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261433   ⟹   XP_063117503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261434   ⟹   XP_063117504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261435   ⟹   XP_063117505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261436   ⟹   XP_063117506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261437   ⟹   XP_063117507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261438   ⟹   XP_063117508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261439   ⟹   XP_063117509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261440   ⟹   XP_063117510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261441   ⟹   XP_063117511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261442   ⟹   XP_063117512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261443   ⟹   XP_063117513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261444   ⟹   XP_063117514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261445   ⟹   XP_063117515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261446   ⟹   XP_063117516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,667 - 114,991,463 (+)NCBI
RefSeq Acc Id: XM_063261447   ⟹   XP_063117517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,667 - 114,991,463 (+)NCBI
RefSeq Acc Id: XM_063261448   ⟹   XP_063117518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,596,886 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261449   ⟹   XP_063117519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261450   ⟹   XP_063117520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261451   ⟹   XP_063117521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261452   ⟹   XP_063117522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261453   ⟹   XP_063117523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261454   ⟹   XP_063117524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261455   ⟹   XP_063117525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261456   ⟹   XP_063117526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261457   ⟹   XP_063117527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
RefSeq Acc Id: XM_063261458   ⟹   XP_063117528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86113,372,668 - 115,004,073 (+)NCBI
Protein Sequences
Protein RefSeqs NP_446269 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967555 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967559 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967561 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967562 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967571 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967588 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967591 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117494 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117495 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117496 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117497 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117498 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117499 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117500 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117501 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117502 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117503 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117504 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117505 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117506 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117507 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117508 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117509 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117510 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117511 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117512 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117513 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117514 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117515 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117516 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117517 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117518 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117519 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117520 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117521 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117522 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117523 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117524 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117525 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117526 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117527 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117528 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA02853 (Get FASTA)   NCBI Sequence Viewer  
  AAA02854 (Get FASTA)   NCBI Sequence Viewer  
  AAA02855 (Get FASTA)   NCBI Sequence Viewer  
  AAA02856 (Get FASTA)   NCBI Sequence Viewer  
  AAA02857 (Get FASTA)   NCBI Sequence Viewer  
  AAA02858 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000030966.6
  ENSRNOP00000060600.4
  ENSRNOP00000085895.1
  ENSRNOP00000087097.1
  ENSRNOP00000089493.1
  ENSRNOP00000092783
  ENSRNOP00000092783.1
  ENSRNOP00000094179.1
GenBank Protein Q07310 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_446269   ⟸   NM_053817
- Peptide Label: precursor
- UniProtKB: D3ZKS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762955   ⟸   XM_008764733
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: ENSRNOP00000030966   ⟸   ENSRNOT00000031205
RefSeq Acc Id: ENSRNOP00000060600   ⟸   ENSRNOT00000064872
RefSeq Acc Id: XP_038967589   ⟸   XM_039111661
- Peptide Label: isoform X46
- UniProtKB: A0A8I6GKC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967555   ⟸   XM_039111627
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GKL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967584   ⟸   XM_039111656
- Peptide Label: isoform X36
- UniProtKB: D3ZKS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967559   ⟸   XM_039111631
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GKL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967585   ⟸   XM_039111657
- Peptide Label: isoform X23
- UniProtKB: D3ZKS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967570   ⟸   XM_039111642
- Peptide Label: isoform X15
- UniProtKB: D3ZKS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967571   ⟸   XM_039111643
- Peptide Label: isoform X19
- UniProtKB: D3ZKS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967562   ⟸   XM_039111634
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GKL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967590   ⟸   XM_039111662
- Peptide Label: isoform X47
- UniProtKB: D3ZKS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967561   ⟸   XM_039111633
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GKL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967586   ⟸   XM_039111658
- Peptide Label: isoform X39
- UniProtKB: A0A8I6GKC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967587   ⟸   XM_039111659
- Peptide Label: isoform X44
- UniProtKB: A0A8I6GKC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967588   ⟸   XM_039111660
- Peptide Label: isoform X45
- UniProtKB: A0A8I6GKC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967591   ⟸   XM_039111663
- Peptide Label: isoform X31
RefSeq Acc Id: ENSRNOP00000092783   ⟸   ENSRNOT00000119992
RefSeq Acc Id: ENSRNOP00000087097   ⟸   ENSRNOT00000097486
RefSeq Acc Id: ENSRNOP00000094179   ⟸   ENSRNOT00000113245
RefSeq Acc Id: ENSRNOP00000085895   ⟸   ENSRNOT00000103009
RefSeq Acc Id: XP_063117516   ⟸   XM_063261446
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063117517   ⟸   XM_063261447
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063117495   ⟸   XM_063261425
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117503   ⟸   XM_063261433
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063117510   ⟸   XM_063261440
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063117497   ⟸   XM_063261427
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117504   ⟸   XM_063261434
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063117511   ⟸   XM_063261441
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063117501   ⟸   XM_063261431
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063117498   ⟸   XM_063261428
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063117512   ⟸   XM_063261442
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063117502   ⟸   XM_063261432
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063117515   ⟸   XM_063261445
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063117499   ⟸   XM_063261429
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063117521   ⟸   XM_063261451
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063117505   ⟸   XM_063261435
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063117522   ⟸   XM_063261452
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063117525   ⟸   XM_063261455
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063117509   ⟸   XM_063261439
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063117526   ⟸   XM_063261456
- Peptide Label: isoform X41
RefSeq Acc Id: XP_063117500   ⟸   XM_063261430
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117506   ⟸   XM_063261436
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063117513   ⟸   XM_063261443
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063117527   ⟸   XM_063261457
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063117528   ⟸   XM_063261458
- Peptide Label: isoform X43
RefSeq Acc Id: XP_063117507   ⟸   XM_063261437
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063117514   ⟸   XM_063261444
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063117508   ⟸   XM_063261438
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063117519   ⟸   XM_063261449
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063117520   ⟸   XM_063261450
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063117523   ⟸   XM_063261453
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063117524   ⟸   XM_063261454
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063117494   ⟸   XM_063261424
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117496   ⟸   XM_063261426
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117518   ⟸   XM_063261448
- Peptide Label: isoform X29
Protein Domains
EGF-like   Laminin G   Laminin G-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q07310-F1-model_v2 AlphaFold Q07310 1-1578 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620212 AgrOrtholog
BioCyc Gene G2FUF-36682 BioCyc
Ensembl Genes ENSRNOG00000047574 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031205.6 UniProtKB/TrEMBL
  ENSRNOT00000064872.4 UniProtKB/TrEMBL
  ENSRNOT00000092573.2 UniProtKB/TrEMBL
  ENSRNOT00000097486.1 UniProtKB/TrEMBL
  ENSRNOT00000103009.1 UniProtKB/TrEMBL
  ENSRNOT00000113245.1 UniProtKB/TrEMBL
  ENSRNOT00000119992 ENTREZGENE
  ENSRNOT00000119992.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurexin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syndecan/Neurexin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116508 UniProtKB/Swiss-Prot
NCBI Gene 116508 ENTREZGENE
PANTHER NEUREXIN-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NEUREXIN-4 UniProtKB/TrEMBL
  PIKACHURIN-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Laminin_G_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syndecan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nrxn3 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047574 RatGTEx
SMART 4.1m UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A3D2_RAT UniProtKB/TrEMBL
  A0A8I6ACR6_RAT UniProtKB/TrEMBL
  A0A8I6GES9_RAT UniProtKB/TrEMBL
  A0A8I6GKC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKL9 ENTREZGENE, UniProtKB/TrEMBL
  A6JEC0_RAT UniProtKB/TrEMBL
  D3ZKS5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSD9_RAT UniProtKB/TrEMBL
  NRX3A_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q07280 UniProtKB/Swiss-Prot
  Q07311 UniProtKB/Swiss-Prot
  Q07312 UniProtKB/Swiss-Prot
  Q07313 UniProtKB/Swiss-Prot
  Q07314 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nrxn3  neurexin 3  LOC108351353  uncharacterized LOC108351353  Data merged from RGD:11453906 737654 PROVISIONAL
2016-08-02 LOC108351353  uncharacterized LOC108351353      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Nrxn3  neurexin 3      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Nrxn3  neurexin 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization may be secreted into extracellular space 729037
gene_expression expressed in brain, cerebellum and spinal cord 729037