Pcyt2 (phosphate cytidylyltransferase 2, ethanolamine) - Rat Genome Database

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Gene: Pcyt2 (phosphate cytidylyltransferase 2, ethanolamine) Rattus norvegicus
Analyze
Symbol: Pcyt2
Name: phosphate cytidylyltransferase 2, ethanolamine
RGD ID: 619970
Description: Enables ethanolamine-phosphate cytidylyltransferase activity. Predicted to be involved in phosphatidylethanolamine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 82. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine); PARTICIPATES IN lamivudine pharmacokinetics pathway; glycerophospholipid metabolic pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CTP:phopshoethanolamine cytidylyltransferase; CTP:phosphoethanolamine cytidylyltransferase; ET; ethanolamine-phosphate cytidylyltransferase; MGC93299; phosphorylethanolamine transferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,387,150 - 106,394,500 (-)NCBIGRCr8
mRatBN7.210105,888,769 - 105,896,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,888,775 - 105,896,172 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,992,673 - 110,999,983 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,455,701 - 110,463,011 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,809,284 - 105,816,596 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,788,348 - 109,795,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,788,350 - 109,795,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,381,397 - 109,388,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,002,023 - 110,009,335 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,016,526 - 110,023,839 (-)NCBI
Celera10104,432,228 - 104,439,540 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcyt2Ratgenetic disease  ISOPCYT2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
Pcyt2Rathereditary spastic paraplegia 82  ISOPCYT2 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegia 82 and autosomal recessiveClinVarPMID:25741868 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcyt2Rathereditary spastic paraplegia 82  ISOPCYT2 (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
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With
Reference
Notes
Source
Original Reference(s)
Pcyt2Rat(1->4)-beta-D-glucan multiple interactionsISOPcyt2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of PCYT2 mRNACTDPMID:36331819
Pcyt2Rat1,2,4-trimethylbenzene decreases expressionEXP 6480464pseudocumene results in decreased expression of PCYT2 proteinCTDPMID:17337753
Pcyt2Rat1,2-dichloroethane decreases expressionISOPcyt2 (Mus musculus)6480464ethylene dichloride results in decreased expression of PCYT2 mRNACTDPMID:28960355
Pcyt2Rat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of PCYT2 proteinCTDPMID:32145629
Pcyt2Rat17beta-estradiol affects expressionISOPcyt2 (Mus musculus)6480464Estradiol affects the expression of PCYT2 mRNACTDPMID:39298647
Pcyt2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPcyt2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PCYT2 mRNACTDPMID:19465110 more ...
Pcyt2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PCYT2 mRNACTDPMID:32109520
Pcyt2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPcyt2 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to PCYT2 gene]CTDPMID:28213091
Pcyt2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PCYT2 mRNACTDPMID:26232522 and PMID:33387578
Pcyt2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPcyt2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PCYT2 mRNACTDPMID:21570461
Pcyt2Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOPcyt2 (Mus musculus)64804642 more ...CTDPMID:38648751
Pcyt2Rat3,4-methylenedioxymethamphetamine increases expressionISOPcyt2 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of PCYT2 mRNACTDPMID:20188158
Pcyt2Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of PCYT2 proteinCTDPMID:34915118
Pcyt2Rat4,4'-sulfonyldiphenol affects expressionISOPcyt2 (Mus musculus)6480464bisphenol S affects the expression of PCYT2 mRNACTDPMID:39298647
Pcyt2Rat4,4'-sulfonyldiphenol multiple interactionsISOPCYT2 (Homo sapiens)6480464[bisphenol S co-treated with Fulvestrant] results in increased methylation of PCYT2 geneCTDPMID:31601247
Pcyt2Rat5-aza-2'-deoxycytidine increases expressionISOPCYT2 (Homo sapiens)6480464Decitabine results in increased expression of PCYT2 mRNACTDPMID:17908484
Pcyt2Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of PCYT2 mRNACTDPMID:24780913
Pcyt2Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of PCYT2 mRNACTDPMID:31881176
Pcyt2Rataflatoxin B1 affects expressionISOPCYT2 (Homo sapiens)6480464Aflatoxin B1 affects the expression of PCYT2 proteinCTDPMID:20106945
Pcyt2Rataflatoxin B1 decreases expressionISOPCYT2 (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of PCYT2 mRNACTDPMID:27153756

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Biological Process
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcyt2Ratbiosynthetic process involved_inIEAInterPro:IPR0048211600115GO_REF:0000002InterProGO_REF:0000002
Pcyt2Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Pcyt2Ratphosphatidylethanolamine biosynthetic process  TAS 633525 RGD 
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inIEAInterPro:IPR0446081600115GO_REF:0000002InterProGO_REF:0000002
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inIEAUniProtKB:Q99447 and ensembl:ENSP000004392451600115GO_REF:0000107EnsemblGO_REF:0000107
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inISOPcyt2 (Mus musculus)1624291 PMID:17325045RGDPMID:17325045
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inIBAFB:FBgn0032482 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inISOPCYT2 (Homo sapiens)1624291 PMID:31637422RGDPMID:31637422
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inIEAUniPathway:UPA005581600115GO_REF:0000041UniProtGO_REF:0000041
Pcyt2Ratphosphatidylethanolamine biosynthetic process involved_inISSUniProtKB:Q994471600115GO_REF:0000024UniProtGO_REF:0000024
Pcyt2Ratphospholipid biosynthetic process involved_inIEAUniProtKB-KW:KW-05941600115GO_REF:0000043UniProtGO_REF:0000043
1 to 11 of 11 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcyt2Ratcytoplasm is_active_inIBAFB:FBgn0032482 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Pcyt2Ratcatalytic activity enablesIEAInterPro:IPR0048211600115GO_REF:0000002InterProGO_REF:0000002
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity  IDA 633525 RGD 
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesIEARHEA:245921600115GO_REF:0000116RHEAGO_REF:0000116
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesIEAEC:2.7.7.141600115GO_REF:0000003UniProtGO_REF:0000003
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesIEAInterPro:IPR0446081600115GO_REF:0000002InterProGO_REF:0000002
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesIEAUniProtKB:Q99447 and ensembl:ENSP000004392451600115GO_REF:0000107EnsemblGO_REF:0000107
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesISOPcyt2 (Mus musculus)1624291 PMID:17325045RGDPMID:17325045
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesIBAFB:FBgn0032482 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesIEAARBA:ARBA000341481600115GO_REF:0000117UniProtGO_REF:0000117
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesISOPCYT2 (Homo sapiens)1624291 PMID:31637422RGDPMID:31637422
Pcyt2Ratethanolamine-phosphate cytidylyltransferase activity enablesISSUniProtKB:Q994471600115GO_REF:0000024UniProtGO_REF:0000024
Pcyt2Ratnucleotidyltransferase activity enablesIEAUniProtKB-KW:KW-05481600115GO_REF:0000043UniProtGO_REF:0000043
Pcyt2Ratprotein binding enablesISOPCYT2 (Homo sapiens)1624291UniProtKB:O15357 more ...RGDPMID:28514442 more ...
Pcyt2Rattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
1 to 14 of 14 rows

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcyt2Ratlamivudine pharmacokinetics pathway  ISOPCYT2 (Homo sapiens)10402751 SMPDBSMP:00649

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pcyt2Ratglycerophospholipid metabolic pathway  IEA 6907045 KEGGrno:00564

1 to 9 of 9 rows
#
Reference Title
Reference Citation
1. Cloning and expression of CTP:phosphoethanolamine cytidylyltransferase cDNA from rat liver. Bladergroen BA, etal., Biochem J 1999 Oct 1;343 Pt 1:107-14.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:14759225   PMID:15489334  



Pcyt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,387,150 - 106,394,500 (-)NCBIGRCr8
mRatBN7.210105,888,769 - 105,896,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,888,775 - 105,896,172 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,992,673 - 110,999,983 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,455,701 - 110,463,011 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,809,284 - 105,816,596 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,788,348 - 109,795,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,788,350 - 109,795,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,381,397 - 109,388,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,002,023 - 110,009,335 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,016,526 - 110,023,839 (-)NCBI
Celera10104,432,228 - 104,439,540 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
PCYT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,900,958 - 81,911,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,900,958 - 81,911,432 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,858,834 - 79,869,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,455,384 - 77,462,586 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,464,784 - 76,473,410 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,262,457 - 75,287,046 (-)NCBIHuRef
CHM1_11779,946,981 - 79,955,542 (-)NCBICHM1_1
T2T-CHM13v2.01782,768,118 - 82,778,559 (-)NCBIT2T-CHM13v2.0
Pcyt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,500,888 - 120,508,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,500,913 - 120,508,762 (-)EnsemblGRCm39 Ensembl
GRCm3811120,610,062 - 120,617,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,610,087 - 120,617,936 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,471,401 - 120,479,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,426,177 - 120,433,980 (-)NCBIMGSCv36mm8
Celera11132,345,379 - 132,353,183 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.33NCBI
Pcyt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,256,770 - 1,266,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,258,993 - 1,266,108 (+)NCBIChiLan1.0ChiLan1.0
PCYT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,440,330 - 98,447,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,341,093 - 103,348,358 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,309,798 - 76,317,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,010,262 - 82,018,515 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,010,262 - 82,018,515 (-)Ensemblpanpan1.1panPan2
PCYT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19383,714 - 390,164 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9376,445 - 442,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9985,814 - 992,258 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09977,032 - 983,475 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9977,078 - 983,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,002,181 - 1,008,623 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,128,807 - 1,135,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,207,457 - 1,213,883 (+)NCBIUU_Cfam_GSD_1.0
Pcyt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602994,046 - 1,001,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,410,948 - 5,417,988 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,410,975 - 5,417,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCYT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,084,410 - 1,091,029 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,084,416 - 1,091,031 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PCYT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,777,641 - 73,784,800 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,776,092 - 73,784,724 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,226,524 - 45,236,947 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcyt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,746,373 - 10,753,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,746,551 - 10,753,221 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pcyt2
15 total Variants

Predicted Target Of
Summary Value
Count of predictions:377
Count of miRNA genes:177
Interacting mature miRNAs:197
Transcripts:ENSRNOT00000054952, ENSRNOT00000068708
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat

1 to 10 of 40 rows
RH130955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,896,533 - 105,896,745 (+)MAPPERmRatBN7.2
Rnor_6.010109,796,104 - 109,796,315NCBIRnor6.0
Rnor_5.010109,389,156 - 109,389,367UniSTSRnor5.0
RGSC_v3.410110,009,727 - 110,009,938UniSTSRGSC3.4
Celera10104,439,932 - 104,440,143UniSTS
Cytogenetic Map10q32.3UniSTS
RH142548  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,894,807 - 105,894,915 (+)MAPPERmRatBN7.2
Rnor_6.010109,794,378 - 109,794,485NCBIRnor6.0
Rnor_5.010109,387,430 - 109,387,537UniSTSRnor5.0
RGSC_v3.410110,008,001 - 110,008,108UniSTSRGSC3.4
Celera10104,438,206 - 104,438,313UniSTS
Cytogenetic Map10q32.3UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000054952   ⟹   ENSRNOP00000051835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,888,775 - 105,896,172 (-)Ensembl
Rnor_6.0 Ensembl10109,788,350 - 109,795,697 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109346   ⟹   ENSRNOP00000082255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,888,830 - 105,896,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111239   ⟹   ENSRNOP00000090700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,888,829 - 105,896,161 (-)Ensembl
RefSeq Acc Id: NM_053568   ⟹   NP_446020
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,387,156 - 106,394,468 (-)NCBI
mRatBN7.210105,888,830 - 105,896,142 (-)NCBI
Rnor_6.010109,788,400 - 109,795,712 (-)NCBI
Rnor_5.010109,381,397 - 109,388,794 (-)NCBI
RGSC_v3.410110,002,023 - 110,009,335 (-)RGD
Celera10104,432,228 - 104,439,540 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247935   ⟹   XP_006247997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,387,150 - 106,394,497 (-)NCBI
mRatBN7.210105,888,769 - 105,896,180 (-)NCBI
Rnor_6.010109,788,348 - 109,795,743 (-)NCBI
Rnor_5.010109,381,397 - 109,388,794 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087002   ⟹   XP_038942930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,387,150 - 106,394,266 (-)NCBI
mRatBN7.210105,888,769 - 105,895,916 (-)NCBI
RefSeq Acc Id: XM_039087004   ⟹   XP_038942932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,387,150 - 106,390,028 (-)NCBI
mRatBN7.210105,888,769 - 105,891,704 (-)NCBI
RefSeq Acc Id: XM_039087005   ⟹   XP_038942933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,387,962 - 106,394,500 (-)NCBI
mRatBN7.210105,889,636 - 105,896,182 (-)NCBI
RefSeq Acc Id: XM_063270003   ⟹   XP_063126073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,387,150 - 106,394,266 (-)NCBI
RefSeq Acc Id: XR_005489961
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,389,503 - 106,394,499 (-)NCBI
mRatBN7.210105,888,769 - 105,896,181 (-)NCBI
RefSeq Acc Id: NP_446020   ⟸   NM_053568
- UniProtKB: Q6AZ30 (UniProtKB/Swiss-Prot),   O88637 (UniProtKB/Swiss-Prot),   A6HLG4 (UniProtKB/TrEMBL),   A0A8I6AET7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247997   ⟸   XM_006247935
- Peptide Label: isoform X1
- UniProtKB: A6HLG3 (UniProtKB/TrEMBL),   A0A8L2QPS4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051835   ⟸   ENSRNOT00000054952
RefSeq Acc Id: XP_038942930   ⟸   XM_039087002
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZT93 (UniProtKB/TrEMBL),   A0A8I6AET7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942932   ⟸   XM_039087004
- Peptide Label: isoform X4
Cytidyltransferase-like

Name Modeler Protein Id AA Range Protein Structure
AF-O88637-F1-model_v2 AlphaFold O88637 1-404 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697970
Promoter ID:EPDNEW_R8493
Type:initiation region
Name:Pcyt2_1
Description:phosphate cytidylyltransferase 2, ethanolamine
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010109,795,716 - 109,795,776EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-22403 BioCyc
BioCyc Pathway PWY-7782 [plasmalogen biosynthesis] BioCyc
  PWY4FS-6 [phosphatidylethanolamine biosynthesis II] BioCyc
BioCyc Pathway Image PWY-7782 BioCyc
  PWY4FS-6 BioCyc
Ensembl Genes ENSRNOG00000036684 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000054952 ENTREZGENE
  ENSRNOT00000109346 ENTREZGENE
  ENSRNOT00000131310 ENTREZGENE
Gene3D-CATH 3.40.50.620 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7111560 IMAGE-MGC_LOAD
InterPro CCT UniProtKB/Swiss-Prot
  Cyt_trans-like UniProtKB/Swiss-Prot
  Ect1/PCYT2 UniProtKB/Swiss-Prot
  Rossmann-like_a/b/a_fold UniProtKB/Swiss-Prot
KEGG Report rno:89841 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93299 IMAGE-MGC_LOAD
NCBI Gene 89841 ENTREZGENE
PANTHER ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE UniProtKB/Swiss-Prot
  PTHR45780 UniProtKB/Swiss-Prot
Pfam CTP_transf_like UniProtKB/Swiss-Prot
PhenoGen Pcyt2 PhenoGen
RatGTEx ENSRNOG00000036684 RatGTEx
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/Swiss-Prot
UniProt A0A8I5ZT93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AET7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QPS4 ENTREZGENE, UniProtKB/TrEMBL
  A6HLG3 ENTREZGENE, UniProtKB/TrEMBL
  A6HLG4 ENTREZGENE, UniProtKB/TrEMBL
  A6HLG5_RAT UniProtKB/TrEMBL
  O88637 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6AZ30 ENTREZGENE
UniProt Secondary Q6AZ30 UniProtKB/Swiss-Prot
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Pcyt2  phosphate cytidylyltransferase 2, ethanolamine      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Pcyt2  phosphate cytidylyltransferase 2, ethanolamine      Symbol and Name status set to provisional 70820 PROVISIONAL