Pcyt2 (phosphate cytidylyltransferase 2, ethanolamine) - Rat Genome Database

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Gene: Pcyt2 (phosphate cytidylyltransferase 2, ethanolamine) Chinchilla lanigera
Analyze
Symbol: Pcyt2
Name: phosphate cytidylyltransferase 2, ethanolamine
RGD ID: 8983394
Description: ENCODES a protein that exhibits ethanolamine-phosphate cytidylyltransferase activity (ortholog); INVOLVED IN phosphatidylethanolamine biosynthetic process (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 82 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ethanolamine-phosphate cytidylyltransferase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,256,770 - 1,266,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,258,993 - 1,266,108 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pcyt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,256,770 - 1,266,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,258,993 - 1,266,108 (+)NCBIChiLan1.0ChiLan1.0
PCYT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,900,958 - 81,911,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,900,958 - 81,911,432 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,858,834 - 79,869,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,455,384 - 77,462,586 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,464,784 - 76,473,410 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,262,457 - 75,287,046 (-)NCBIHuRef
CHM1_11779,946,981 - 79,955,542 (-)NCBICHM1_1
T2T-CHM13v2.01782,768,118 - 82,778,559 (-)NCBIT2T-CHM13v2.0
Pcyt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,500,888 - 120,508,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,500,913 - 120,508,762 (-)EnsemblGRCm39 Ensembl
GRCm3811120,610,062 - 120,617,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,610,087 - 120,617,936 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,471,401 - 120,479,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,426,177 - 120,433,980 (-)NCBIMGSCv36mm8
Celera11132,345,379 - 132,353,183 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.33NCBI
Pcyt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,387,150 - 106,394,500 (-)NCBIGRCr8
mRatBN7.210105,888,769 - 105,896,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,888,775 - 105,896,172 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,992,673 - 110,999,983 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,455,701 - 110,463,011 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,809,284 - 105,816,596 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,788,348 - 109,795,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,788,350 - 109,795,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,381,397 - 109,388,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,002,023 - 110,009,335 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,016,526 - 110,023,839 (-)NCBI
Celera10104,432,228 - 104,439,540 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
PCYT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,440,330 - 98,447,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,341,093 - 103,348,358 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,309,798 - 76,317,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,010,262 - 82,018,515 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,010,262 - 82,018,515 (-)Ensemblpanpan1.1panPan2
PCYT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19383,714 - 390,164 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9376,445 - 442,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9985,814 - 992,258 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09977,032 - 983,475 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9977,078 - 983,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,002,181 - 1,008,623 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,128,807 - 1,135,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,207,457 - 1,213,883 (+)NCBIUU_Cfam_GSD_1.0
Pcyt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602994,046 - 1,001,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,410,948 - 5,417,988 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,410,975 - 5,417,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCYT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,084,410 - 1,091,029 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,084,416 - 1,091,031 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PCYT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,777,641 - 73,784,800 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,776,092 - 73,784,724 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,226,524 - 45,236,947 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcyt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,746,373 - 10,753,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,746,551 - 10,753,221 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000009927   ⟹   ENSCLAP00000009798
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555061,256,770 - 1,266,762 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000009928   ⟹   ENSCLAP00000009799
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555061,259,113 - 1,265,537 (+)Ensembl
RefSeq Acc Id: XM_005407247   ⟹   XP_005407304
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555061,258,995 - 1,266,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506061   ⟹   XP_013361515
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555061,258,993 - 1,266,108 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407304 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361515 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009798
  ENSCLAP00000009798.1
  ENSCLAP00000009799.1
RefSeq Acc Id: XP_005407304   ⟸   XM_005407247
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V9S4 (UniProtKB/TrEMBL),   A0A8C2V605 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361515   ⟸   XM_013506061
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V605 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000009799   ⟸   ENSCLAT00000009928
Ensembl Acc Id: ENSCLAP00000009798   ⟸   ENSCLAT00000009927
Protein Domains
Cytidyltransferase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006792 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009927 ENTREZGENE
  ENSCLAT00000009927.1 UniProtKB/TrEMBL
  ENSCLAT00000009928.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.620 UniProtKB/TrEMBL
InterPro CCT UniProtKB/TrEMBL
  Cyt_trans-like UniProtKB/TrEMBL
  Ect1/PCYT2 UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
NCBI Gene Pcyt2 ENTREZGENE
PANTHER ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE UniProtKB/TrEMBL
  PTHR45780 UniProtKB/TrEMBL
Pfam CTP_transf_like UniProtKB/TrEMBL
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/TrEMBL
UniProt A0A8C2V605 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V9S4 ENTREZGENE, UniProtKB/TrEMBL