Mup4-ps6 (major urinary protein 4, pseudogene 6) - Rat Genome Database

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Gene: Mup4-ps6 (major urinary protein 4, pseudogene 6) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Mup4-ps6
Name: major urinary protein 4, pseudogene 6
RGD ID: 41225607
Description: Predicted to enable pheromone binding activity and small molecule binding activity. Predicted to be located in extracellular region.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AABR07048463.1; LOC120102892; major urinary protein-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8579,809,294 - 79,811,588 (-)NCBIGRCr8
mRatBN7.2575,014,393 - 75,016,663 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,986,802 - 75,016,663 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl574,986,802 - 75,016,663 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl577,744,450 - 77,749,613 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mup4-ps6Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Mup4-ps6Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mup4-ps6Ratpheromone binding enablesIEAUniProtKB-KW:KW-05901600115GO_REF:0000043UniProtGO_REF:0000043
Mup4-ps6Ratsmall molecule binding enablesIEAInterPro:IPR0023451600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.


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Variants in Mup4-ps6
28 total Variants

1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat

1 to 10 of 39 rows





GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000075988   ⟹   ENSRNOP00000068231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl574,986,802 - 75,016,663 (-)Ensembl
Ensembl Protein ENSRNOP00000068231.2
Ensembl Acc Id: ENSRNOP00000068231   ⟸   ENSRNOT00000075988
Lipocalin/cytosolic fatty-acid binding


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 20 of 20 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-41123 BioCyc
Ensembl Genes ENSRNOG00000047613 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075988.4 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Lipocalin UniProtKB/TrEMBL
  Lipocalin_CS UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
  Maj_urinary UniProtKB/TrEMBL
NCBI Gene LOC120102892 ENTREZGENE
PANTHER MAJOR URINARY PROTEIN 1-RELATED UniProtKB/TrEMBL
  PTHR11430 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PhenoGen Mup4-ps6 PhenoGen
PRINTS LIPOCALIN UniProtKB/TrEMBL
  MAJORURINARY UniProtKB/TrEMBL
PROSITE LIPOCALIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047613 RatGTEx
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A096MJR3_RAT UniProtKB/TrEMBL
1 to 20 of 20 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Mup4-ps6  major urinary protein 4, pseudogene 6  LOC120102892  major urinary protein-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC120102892  major urinary protein-like  AABR07048463.1    Data merged from RGD:15005301 737654 PROVISIONAL
2021-01-27 LOC120102892  major urinary protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07048463.1        Symbol and Name status set to provisional 45752 PROVISIONAL