Foxa2 (forkhead box A2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Foxa2 (forkhead box A2) Rattus norvegicus
Analyze
Symbol: Foxa2
Name: forkhead box A2
RGD ID: 2808
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Involved in positive regulation of transcription by RNA polymerase II and response to insulin. Located in nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human FOXA2 (forkhead box A2); PARTICIPATES IN forkhead class A signaling pathway; Hedgehog signaling pathway; maturity-onset diabetes of the young pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: forkhead box protein A2; hepatocyte nuclear factor 3 beta; hepatocyte nuclear factor 3, beta; hepatocyte nuclear factor 3-beta; HNF-3-beta; HNF-3B; Hnf3b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83155,923,305 - 155,927,508 (-)NCBIGRCr8
mRatBN7.23135,470,123 - 135,474,326 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,470,131 - 135,474,326 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3139,406,140 - 139,410,336 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03147,990,259 - 147,994,455 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03145,698,089 - 145,702,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,383,084 - 142,387,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,383,278 - 142,387,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03148,793,310 - 148,797,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43136,739,009 - 136,743,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13136,644,581 - 136,648,777 (-)NCBI
Celera3134,324,023 - 134,328,218 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2RatExperimental Diabetes Mellitus  IEP 2312358mRNA:increased expression:kidney cortexRGD 
Foxa2Rathyperinsulinism  ISOFoxa2 (Mus musculus)2313243 RGD 
Foxa2Ratlung non-small cell carcinoma  ISOFOXA2 (Homo sapiens)11554787mRNA:decreased expression:lungRGD 
Foxa2Ratobesity  ISOFoxa2 (Mus musculus)1627574 RGD 
Foxa2Rattype 2 diabetes mellitus  ISOFOXA2 (Homo sapiens)2313242DNA:SNP and repeat: :rs1055080 (human)RGD 
Foxa2Rattype 2 diabetes mellitus  ISOFOXA2 (Homo sapiens)2313245DNA:missense mutation:p.A86T (human)RGD 
Foxa2Rattype 2 diabetes mellitus no_associationISOFOXA2 (Homo sapiens)2313246DNA:transversion more ...RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Ratcombined pituitary hormone deficiency 3  ISOFOXA2 (Homo sapiens)8554872ClinVar Annotator: match by term: Non-acquired combined pituitary hormone deficiencyClinVarPMID:25741868 more ...
Foxa2Ratfamilial hyperinsulinemic hypoglycemia 1  ISOFOXA2 (Homo sapiens)8554872ClinVar Annotator: match by term: Hyperinsulinemic hypoglycemia more ...ClinVarPMID:38605124
Foxa2Ratgenetic disease  ISOFOXA2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2RatDiaphragmatic Hernia  ISOFOXA2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16863852
Foxa2RatExperimental Liver Cirrhosis  ISOFOXA2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Foxa2Ratlung disease  ISOFOXA2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16863852

1 to 20 of 174 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Rat(1->4)-beta-D-glucan multiple interactionsISOFoxa2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of FOXA2 mRNACTDPMID:36331819
Foxa2Rat1,2-dichloroethane increases expressionISOFoxa2 (Mus musculus)6480464ethylene dichloride results in increased expression of FOXA2 mRNACTDPMID:28960355
Foxa2Rat1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of FOXA2 mRNACTDPMID:32387197
Foxa2Rat1,2-dimethylhydrazine decreases expressionISOFoxa2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of FOXA2 mRNACTDPMID:22206623
Foxa2Rat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of FOXA2 mRNACTDPMID:25380136
Foxa2Rat17beta-estradiol increases expressionISOFOXA2 (Homo sapiens)6480464Estradiol results in increased expression of FOXA2 mRNACTDPMID:23184660
Foxa2Rat17beta-estradiol increases expressionISOFoxa2 (Mus musculus)6480464Estradiol results in increased expression of FOXA2 mRNACTDPMID:39298647
Foxa2Rat17beta-estradiol multiple interactionsEXP 6480464[Testosterone co-treated with Estradiol] results in decreased expression of FOXA2 mRNACTDPMID:32741896
Foxa2Rat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of FOXA2 mRNACTDPMID:32145629
Foxa2Rat17beta-estradiol multiple interactionsISOFOXA2 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of FOXA2 mRNACTDPMID:30165855
Foxa2Rat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISOFoxa2 (Mus musculus)6480464FOXA2 protein inhibits the reaction [Dihydrotestosterone results in increased expression of LCN5 mRNA]CTDPMID:16740652
Foxa2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOFoxa2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of FOXA2 mRNACTDPMID:21570461 and PMID:24058054
Foxa2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOFoxa2 (Mus musculus)6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of FOXA2 mRNACTDPMID:25975270
Foxa2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOFoxa2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of FOXA2 mRNACTDPMID:19933214 and PMID:25975270
Foxa2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOFoxa2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of FOXA2 mRNACTDPMID:24052564 and PMID:37172768
Foxa2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of FOXA2 mRNACTDPMID:19490992
Foxa2Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOFoxa2 (Mus musculus)64804642 more ...CTDPMID:38648751
Foxa2Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of FOXA2 mRNACTDPMID:21346803
Foxa2Rat3,3',4,4',5-pentachlorobiphenyl increases expressionEXP 64804643 more ...CTDPMID:23196670
Foxa2Rat3,3',4,4',5-pentachlorobiphenyl affects expressionISOFoxa2 (Mus musculus)64804643 more ...CTDPMID:37080397

1 to 20 of 174 rows

Biological Process
1 to 20 of 82 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Ratadult locomotory behavior involved_inISSUniProtKB:P355831600115GO_REF:0000024ParkinsonsUK-UCLGO_REF:0000024
Foxa2Ratadult locomotory behavior acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:1857725 PMID:18076286RGDPMID:18076286
Foxa2Ratanatomical structure formation involved in morphogenesis acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:1347472 more ...RGDPMID:10498685 and PMID:23383217
Foxa2Ratanatomical structure morphogenesis involved_inIBAFB:FBgn0000659 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Foxa2Ratanatomical structure morphogenesis acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:95841 PMID:9226455RGDPMID:9226455
Foxa2Ratanterior/posterior pattern specification acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:99783 PMID:10498685RGDPMID:10498685
Foxa2Ratcell development acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:2177337 more ...RGDPMID:15680365
Foxa2Ratcell differentiation involved_inIBAFB:FBgn0000659 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Foxa2Ratcell differentiation in hindbrain acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:1347476 more ...RGDPMID:17922007
Foxa2Ratcell fate specification involved_inISSUniProtKB:P355831600115GO_REF:0000024ParkinsonsUK-UCLGO_REF:0000024
Foxa2Ratcell fate specification acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291 PMID:18076286RGDPMID:18076286
Foxa2Ratcellular response to cadmium ion acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291 PMID:15219627RGDPMID:15219627
Foxa2Ratchromatin organization involved_inIEAUniProtKB-KW:KW-01561600115GO_REF:0000043UniProtGO_REF:0000043
Foxa2Ratconnective tissue development acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:1347472 PMID:23383217RGDPMID:23383217
Foxa2Ratdopaminergic neuron differentiation involved_inIEAUniProtKB:Q9Y261 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2Ratdopaminergic neuron differentiation acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:1857725 PMID:18076286RGDPMID:18076286
Foxa2Ratdopaminergic neuron differentiation acts_upstream_ofISOFoxa2 (Mus musculus)1624291MGI:1347472 more ...RGDPMID:17596284
Foxa2Ratdopaminergic neuron differentiation involved_inISSUniProtKB:P355831600115GO_REF:0000024ParkinsonsUK-UCLGO_REF:0000024
Foxa2Ratdopaminergic neuron differentiation involved_inISOFOXA2 (Homo sapiens)1624291UniProtKB:P32243 more ...RGDPMID:19951692
Foxa2Ratdorsal/ventral neural tube patterning acts_upstream_of_or_withinISOFoxa2 (Mus musculus)1624291MGI:1347472 more ...RGDPMID:18590716 more ...
1 to 20 of 82 rows

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Ratcell junction located_inIEAUniProtKB:Q9Y261 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2Ratcell junction located_inISOFOXA2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Foxa2Ratcell junction located_inIEAUniProtKB:B0ZTD4 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Foxa2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Foxa2Ratnucleoplasm located_inIEAUniProtKB:B0ZTD4 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2Ratnucleoplasm located_inISOFOXA2 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Foxa2Ratnucleoplasm located_inIEAUniProtKB:Q9Y261 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2Ratnucleus located_inISOFOXA2 (Homo sapiens)1624291 PMID:20160041 more ...RGDPMID:20160041 more ...
Foxa2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Foxa2Ratnucleus located_inIEAUniRule:UR0004137411600115GO_REF:0000104UniProtGO_REF:0000104
Foxa2Ratnucleus located_inISOFoxa2 (Mus musculus)1624291 PMID:12488434 more ...RGDPMID:12488434 more ...
Foxa2Ratnucleus located_inIEAUniProtKB:Q9Y261 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2Ratnucleus located_inIDA 8553263PMID:11875061BHF-UCL 
Foxa2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Foxa2Rattranscription regulator complex part_ofISOFoxa2 (Mus musculus)1624291 PMID:26494787RGDPMID:26494787
1 to 16 of 16 rows

Molecular Function
1 to 20 of 43 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Ratchromatin binding enablesISOFoxa2 (Mus musculus)1624291 PMID:22780989RGDPMID:22780989
Foxa2RatDNA binding enablesISOFOXA2 (Homo sapiens)1624291 PMID:9931457RGDPMID:9931457
Foxa2RatDNA binding enablesIEAUniProtKB:Q9Y261 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2RatDNA binding enablesIEAUniRule:UR0004137411600115GO_REF:0000104UniProtGO_REF:0000104
Foxa2RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
Foxa2RatDNA-binding transcription activator activity, RNA polymerase II-specific  IDA 1627570 RGD 
Foxa2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOFoxa2 (Mus musculus)1624291 PMID:11875061 and PMID:22696295RGDPMID:11875061 and PMID:22696295
Foxa2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIDA 598092472PMID:12642491BHF-UCL 
Foxa2RatDNA-binding transcription factor activity  IDA 70587 RGD 
Foxa2RatDNA-binding transcription factor activity enablesIEAUniProtKB:Q9Y261 and ensembl:ENSP000004003411600115GO_REF:0000107EnsemblGO_REF:0000107
Foxa2RatDNA-binding transcription factor activity enablesISOFoxa2 (Mus musculus)1624291 PMID:11914369 more ...RGDPMID:11914369 more ...
Foxa2RatDNA-binding transcription factor activity enablesIEAInterPro:IPR001766 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Foxa2RatDNA-binding transcription factor activity enablesISOFOXA2 (Homo sapiens)1624291 PMID:12124776 more ...RGDPMID:12124776 more ...
Foxa2RatDNA-binding transcription factor activity enablesIEAARBA:ARBA000282951600115GO_REF:0000117UniProtGO_REF:0000117
Foxa2RatDNA-binding transcription factor activity  IMP 1626707 RGD 
Foxa2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAFB:FBgn0000659 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Foxa2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesISOFoxa2 (Mus musculus)1624291 PMID:10859308 and PMID:14701942RGDPMID:10859308 and PMID:14701942
Foxa2RatDNA-binding transcription repressor activity, RNA polymerase II-specific enablesISOFoxa2 (Mus musculus)1624291 PMID:11875061RGDPMID:11875061
Foxa2Ratdouble-stranded DNA binding  IDA 1626707 RGD 
Foxa2Ratdouble-stranded DNA binding enablesISOFoxa2 (Mus musculus)1624291MGI:1890508 PMID:23117660RGDPMID:23117660
1 to 20 of 43 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Ratmaturity-onset diabetes of the young pathway  IEA 6907045 KEGGrno:04950

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foxa2Ratforkhead class A signaling pathway  ISOFOXA2 (Homo sapiens)6484113 PIDPID:200226
Foxa2Ratforkhead class A signaling pathway  ISOFOXA2 (Homo sapiens)6484113 PIDPID:200087
Foxa2RatHedgehog signaling pathway   ISOFOXA2 (Homo sapiens)6484113 PIDPID:200172

1 to 20 of 27 rows
#
Reference Title
Reference Citation
1. Genetic variation in the hepatocyte nuclear factor-3beta gene (HNF3B) does not contribute to maturity-onset diabetes of the young in French Caucasians. Abderrahmani A, etal., Diabetes. 2000 Feb;49(2):306-8.
2. Hepatocyte nuclear factor 3beta inhibits hepatitis B virus replication in vivo. Banks KE, etal., J Virol 2002 Dec;76(24):12974-80.
3. Transcriptional regulation of the distal promoter of the rat pyruvate carboxylase gene by hepatocyte nuclear factor 3beta/Foxa2 and upstream stimulatory factors in insulinoma cells. Boonsaen T, etal., Biochem J. 2007 Jul 15;405(2):359-67.
4. Joint regulation of the MAP1B promoter by HNF3beta/Foxa2 and Engrailed is the result of a highly conserved mechanism for direct interaction of homeoproteins and Fox transcription factors. Foucher I, etal., Development. 2003 May;130(9):1867-76. doi: 10.1242/dev.00414.
5. SLC2A2 gene expression in kidney of diabetic rats is regulated by HNF-1alpha and HNF-3beta. Freitas HS, etal., Mol Cell Endocrinol. 2009 Jun 16;305(1-2):63-70. Epub 2009 Mar 4.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Upstream region of rat serum albumin gene promoter contributes to promoter activity: presence of functional binding site for hepatocyte nuclear factor-3. Hsiang CH, etal., Biochem J. 1999 Mar 1;338 ( Pt 2):241-9.
8. Hepatocyte nuclear factor 3 alpha belongs to a gene family in mammals that is homologous to the Drosophila homeotic gene fork head. Lai E, etal., Genes Dev 1991 Mar;5(3):416-27.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. SMAD3 prevents binding of NKX2.1 and FOXA1 to the SpB promoter through its MH1 and MH2 domains. Minoo P, etal., Nucleic Acids Res. 2008 Jan;36(1):179-88. Epub 2007 Nov 14.
11. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
12. Identification of DNA-dependent protein kinase as a cofactor for the forkhead transcription factor FoxA2. Nock A, etal., J Biol Chem. 2009 Jul 24;284(30):19915-26. Epub 2009 May 28.
13. Inhibitory cross-talk between STAT5b and liver nuclear factor HNF3beta: impact on the regulation of growth hormone pulse-stimulated, male-specific liver cytochrome P-450 gene expression. Park SH and Waxman DJ, J Biol Chem 2001 Nov 16;276(46):43031-9.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. GOA pipeline RGD automated data pipeline
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Tissue-specific deletion of Foxa2 in pancreatic beta cells results in hyperinsulinemic hypoglycemia. Sund NJ, etal., Genes Dev. 2001 Jul 1;15(13):1706-15.
19. Genetic variants of FOXA2: risk of type 2 diabetes and effect on metabolic traits in North Indians. Tabassum R, etal., J Hum Genet. 2008;53(11-12):957-65. Epub 2008 Sep 17.
20. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
1 to 20 of 27 rows
PMID:8813084   PMID:9152011   PMID:9226455   PMID:9931457   PMID:10498685   PMID:10859308   PMID:11291865   PMID:11914369   PMID:12124776   PMID:12488434   PMID:12911579   PMID:14701942  
PMID:15485926   PMID:15539431   PMID:15567715   PMID:15668254   PMID:15680365   PMID:15737987   PMID:15987774   PMID:16364283   PMID:16522789   PMID:16912278   PMID:17596284   PMID:17922007  
PMID:18076286   PMID:18462699   PMID:18590716   PMID:19951692   PMID:20160041   PMID:21269961   PMID:21385937   PMID:22696295   PMID:22737085   PMID:22780989   PMID:22921202   PMID:23117660  
PMID:23118920   PMID:23383217   PMID:24157454   PMID:24399192   PMID:25057789   PMID:25446530   PMID:26494787   PMID:29200841   PMID:30082727   PMID:30341519   PMID:31843527   PMID:32495363  
PMID:38135007  



Foxa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83155,923,305 - 155,927,508 (-)NCBIGRCr8
mRatBN7.23135,470,123 - 135,474,326 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3135,470,131 - 135,474,326 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3139,406,140 - 139,410,336 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03147,990,259 - 147,994,455 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03145,698,089 - 145,702,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03142,383,084 - 142,387,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3142,383,278 - 142,387,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03148,793,310 - 148,797,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43136,739,009 - 136,743,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13136,644,581 - 136,648,777 (-)NCBI
Celera3134,324,023 - 134,328,218 (-)NCBICelera
Cytogenetic Map3q41NCBI
FOXA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382022,580,998 - 22,585,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2022,580,998 - 22,585,455 (-)EnsemblGRCh38hg38GRCh38
GRCh372022,561,636 - 22,566,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362022,509,823 - 22,514,102 (-)NCBINCBI36Build 36hg18NCBI36
Celera2022,635,086 - 22,639,544 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2022,523,682 - 22,527,950 (-)NCBIHuRef
CHM1_12022,562,253 - 22,566,723 (-)NCBICHM1_1
T2T-CHM13v2.02022,640,367 - 22,644,859 (-)NCBIT2T-CHM13v2.0
Foxa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392147,884,797 - 147,888,889 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2147,884,797 - 147,888,889 (-)EnsemblGRCm39 Ensembl
GRCm382148,042,877 - 148,046,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,042,877 - 148,046,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv372147,868,614 - 147,872,705 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362147,734,364 - 147,738,410 (-)NCBIMGSCv36mm8
Celera2149,306,403 - 149,310,523 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.38NCBI
Foxa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541529,982,940 - 29,986,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541529,982,940 - 29,987,093 (-)NCBIChiLan1.0ChiLan1.0
FOXA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,451,059 - 23,454,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12023,447,894 - 23,451,489 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02022,519,942 - 22,524,262 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12022,872,251 - 22,874,997 (-)NCBIpanpan1.1PanPan1.1panPan2
FOXA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1241,010,370 - 1,013,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl241,010,651 - 1,013,072 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha241,034,459 - 1,038,788 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0241,413,104 - 1,417,432 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl241,414,234 - 1,417,447 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1241,010,961 - 1,015,301 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0241,114,770 - 1,118,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,388,439 - 1,392,767 (+)NCBIUU_Cfam_GSD_1.0
Foxa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640149,544,748 - 149,549,068 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,966,341 - 2,969,349 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,966,341 - 2,969,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1729,997,401 - 30,001,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11729,997,397 - 30,001,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,053,453 - 34,057,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,577,127 - 51,585,168 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,577,833 - 51,580,297 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660786,377,377 - 6,381,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxa2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474122,645,519 - 22,649,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474122,645,580 - 22,649,722 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Foxa2
8 total Variants

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:65
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000017742
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat

1 to 10 of 30 rows
PMC86995P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,471,448 - 135,471,736 (-)MAPPERmRatBN7.2
Rnor_6.03142,385,880 - 142,386,167NCBIRnor6.0
Rnor_5.03148,796,077 - 148,796,364UniSTSRnor5.0
RGSC_v3.43136,740,327 - 136,740,614UniSTSRGSC3.4
Celera3134,325,341 - 134,325,628UniSTS
Cytogenetic Map3q41UniSTS
Foxa2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,471,443 - 135,471,646 (-)MAPPERmRatBN7.2
Rnor_6.03142,385,970 - 142,386,172NCBIRnor6.0
Rnor_5.03148,796,167 - 148,796,369UniSTSRnor5.0
RGSC_v3.43136,740,322 - 136,740,524UniSTSRGSC3.4
Celera3134,325,336 - 134,325,538UniSTS
Cytogenetic Map3q41UniSTS
UniSTS:474762  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,471,091 - 135,471,539 (-)MAPPERmRatBN7.2
Rnor_6.03142,386,077 - 142,386,524NCBIRnor6.0
Rnor_5.03148,796,274 - 148,796,721UniSTSRnor5.0
RGSC_v3.43136,739,970 - 136,740,417UniSTSRGSC3.4
Celera3134,324,984 - 134,325,431UniSTS
Cytogenetic Map3q41UniSTS
UniSTS:547510  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23135,471,502 - 135,471,639 (-)MAPPERmRatBN7.2
Rnor_6.03142,385,977 - 142,386,113NCBIRnor6.0
Rnor_5.03148,796,174 - 148,796,310UniSTSRnor5.0
Celera3134,325,395 - 134,325,531UniSTS
Cytogenetic Map3q41UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 2 12 74 82 86 59 17 59 6 129 41 59 18 58 27



Ensembl Acc Id: ENSRNOT00000017742   ⟹   ENSRNOP00000017742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3135,470,131 - 135,474,326 (-)Ensembl
Rnor_6.0 Ensembl3142,383,278 - 142,387,481 (+)Ensembl
RefSeq Acc Id: NM_001399085   ⟹   NP_001386014
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83155,923,305 - 155,926,488 (-)NCBI
mRatBN7.23135,470,123 - 135,473,306 (-)NCBI
RefSeq Acc Id: NM_012743   ⟹   NP_036875
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83155,923,307 - 155,927,508 (-)NCBI
mRatBN7.23135,470,125 - 135,474,326 (-)NCBI
Rnor_6.03142,383,290 - 142,387,485 (+)NCBI
Rnor_5.03148,793,310 - 148,797,690 (+)NCBI
RGSC_v3.43136,739,009 - 136,743,204 (-)RGD
Celera3134,324,023 - 134,328,218 (-)RGD
Sequence:
Protein RefSeqs NP_001386014 (Get FASTA)   NCBI Sequence Viewer  
  NP_036875 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41338 (Get FASTA)   NCBI Sequence Viewer  
  EDL95107 (Get FASTA)   NCBI Sequence Viewer  
  EDL95108 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017742
  ENSRNOP00000017742.1
GenBank Protein P32182 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036875   ⟸   NM_012743
- Peptide Label: isoform 2
- UniProtKB: P32182 (UniProtKB/Swiss-Prot),   G3V7Q2 (UniProtKB/TrEMBL),   A6K7B1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017742   ⟸   ENSRNOT00000017742
RefSeq Acc Id: NP_001386014   ⟸   NM_001399085
- Peptide Label: isoform 1
- UniProtKB: P32182 (UniProtKB/Swiss-Prot)
Fork-head

Name Modeler Protein Id AA Range Protein Structure
AF-P32182-F1-model_v2 AlphaFold P32182 1-458 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692494
Promoter ID:EPDNEW_R3019
Type:multiple initiation site
Name:Foxa2_1
Description:forkhead box A2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03142,383,261 - 142,383,321EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47523 BioCyc
Ensembl Genes ENSRNOG00000013133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017742 ENTREZGENE
  ENSRNOT00000017742.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fork-head_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Forkhead_box_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOX_domain-containing UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25099 UniProtKB/Swiss-Prot
NCBI Gene 25099 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEPATOCYTE NUCLEAR FACTOR 3-BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Forkhead_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HNF_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxa2 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013133 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC209148
UniProt A6K7B1 ENTREZGENE, UniProtKB/TrEMBL
  FOXA2_RAT UniProtKB/Swiss-Prot
  G3V7Q2 ENTREZGENE, UniProtKB/TrEMBL
  P32182 ENTREZGENE
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Foxa2  forkhead box A2  Hnf3b  hepatocyte nuclear factor 3, beta  Symbol and Name updated 1299863 APPROVED
2002-11-06 Hnf3b  hepatocyte nuclear factor 3, beta    Hepatocyte nuclear factor 3 beta  Name updated 625702 APPROVED
2002-06-10 Hnf3b  Hepatocyte nuclear factor 3 beta      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_process modulates stimulation of male-specific liver Cyp2c11 expression by Stat5b 70587
gene_process in combination with with other liver transcription factors, including Hnf1, Cebpa (C/EBP)and Hnf6, mediates liver-specific expression of hepatic Cyp genes. 70587