Gspt1 (G1 to S phase transition 1) - Rat Genome Database

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Gene: Gspt1 (G1 to S phase transition 1) Rattus norvegicus
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Symbol: Gspt1
Name: G1 to S phase transition 1
RGD ID: 2751
Description: Predicted to enable GTPase activity and translation release factor activity. Predicted to be involved in regulation of translational termination and translational termination. Predicted to act upstream of or within protein methylation. Predicted to be part of translation release factor complex. Predicted to be active in cytosolic ribosome. Orthologous to human GSPT1 (G1 to S phase transition 1); PARTICIPATES IN translation termination pathway; mRNA decay pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: eukaryotic peptide chain release factor GTP-binding subunit ERF3A; eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like; G1 to phase transition 1; G1 to S phase transition protein 1; G1-to-S phase transition 1; LOC100911685; MGC94063
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,867,687 - 4,904,186 (+)NCBIGRCr8
mRatBN7.2104,362,528 - 4,397,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl104,362,510 - 4,397,198 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx109,059,243 - 9,093,879 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,580,331 - 8,614,971 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0104,218,577 - 4,253,220 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0104,313,100 - 4,347,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl104,312,863 - 4,446,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,179,171 - 3,213,732 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,249,196 - 4,283,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera103,386,388 - 3,421,025 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1Ratschizophrenia  ISOGSPT1 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311

1 to 20 of 115 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1Rat(-)-demecolcine increases expressionISOGSPT1 (Homo sapiens)6480464Demecolcine results in increased expression of GSPT1 mRNACTDPMID:23649840
Gspt1Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionEXP 6480464o and p'-DDT results in increased expression of GSPT1 mRNACTDPMID:24096037
Gspt1Rat1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISOGspt1 (Mus musculus)6480464o and p'-DDT results in increased expression of GSPT1 mRNACTDPMID:24096037
Gspt1Rat1,2-dimethylhydrazine multiple interactionsISOGspt1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of GSPT1 mRNACTDPMID:22206623
Gspt1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of GSPT1 mRNACTDPMID:16174780 and PMID:24096037
Gspt1Rat17alpha-ethynylestradiol multiple interactionsISOGspt1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GSPT1 mRNACTDPMID:17942748
Gspt1Rat17alpha-ethynylestradiol affects expressionISOGspt1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of GSPT1 mRNACTDPMID:17555576
Gspt1Rat17alpha-ethynylestradiol increases expressionISOGspt1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of GSPT1 mRNACTDPMID:16174780 more ...
Gspt1Rat17beta-estradiol increases expressionISOGspt1 (Mus musculus)6480464Estradiol results in increased expression of GSPT1 mRNACTDPMID:39298647
Gspt1Rat17beta-estradiol increases expressionISOGSPT1 (Homo sapiens)6480464Estradiol results in increased expression of GSPT1 mRNACTDPMID:31614463
Gspt1Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOGSPT1 (Homo sapiens)6480464Metribolone results in increased expression of GSPT1 proteinCTDPMID:17152098
Gspt1Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOGspt1 (Mus musculus)64804642 more ...CTDPMID:30294300
Gspt1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOGspt1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of GSPT1 mRNACTDPMID:21570461
Gspt1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOGspt1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GSPT1 mRNACTDPMID:17942748
Gspt1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOGspt1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of GSPT1 mRNACTDPMID:17942748
Gspt1Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of GSPT1 mRNACTDPMID:21346803
Gspt1Rat2-amino-2-deoxy-D-glucopyranose multiple interactionsISOGSPT1 (Homo sapiens)6480464Glucosamine analog inhibits the reaction [TNF results in increased expression of GSPT1 mRNA] and Glucosamine inhibits the reaction [TNF results in increased expression of GSPT1 mRNA]CTDPMID:18173918
Gspt1Rat2-hydroxypropanoic acid decreases expressionISOGSPT1 (Homo sapiens)6480464Lactic Acid results in decreased expression of GSPT1 mRNACTDPMID:30851411
Gspt1Rat2-methylcholine affects expressionISOGSPT1 (Homo sapiens)6480464beta-methylcholine affects the expression of GSPT1 mRNACTDPMID:21179406
Gspt1Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of GSPT1 mRNACTDPMID:28522335

1 to 20 of 115 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1Ratprotein methylation acts_upstream_of_or_withinISOGSPT1 (Homo sapiens)1624291 PMID:18539146RGDPMID:18539146
Gspt1Ratregulation of translational termination involved_inISOGSPT1 (Homo sapiens)1624291 PMID:30682371RGDPMID:30682371
Gspt1Ratregulation of translational termination involved_inIEAUniProtKB:P15170 and ensembl:ENSP000003981311600115GO_REF:0000107EnsemblGO_REF:0000107
Gspt1Rattranslation involved_inIBACGD:CAL0000176993 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gspt1Rattranslation involved_inIEAUniProtKB-KW:KW-06481600115GO_REF:0000043UniProtGO_REF:0000043
Gspt1Rattranslational termination involved_inISOGSPT1 (Homo sapiens)1624291 PMID:15987998 more ...RGDPMID:15987998 more ...
Gspt1Rattranslational termination involved_inIEAUniProtKB:P15170 and ensembl:ENSP000003981311600115GO_REF:0000107EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1Ratcytosolic ribosome is_active_inISOGSPT1 (Homo sapiens)1624291 PMID:15987998RGDPMID:15987998
Gspt1Ratcytosolic ribosome is_active_inIEAUniProtKB:P15170 and ensembl:ENSP000003981311600115GO_REF:0000107EnsemblGO_REF:0000107
Gspt1Rattranslation release factor complex part_ofISOGSPT1 (Homo sapiens)1624291 PMID:19417105 and PMID:27863242RGDPMID:19417105 and PMID:27863242
Gspt1Rattranslation release factor complex part_ofIEAUniProtKB:P15170 and ensembl:ENSP000003981311600115GO_REF:0000107EnsemblGO_REF:0000107
Gspt1Rattranslation release factor complex part_ofIBAPANTHER:PTN000562411 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1RatGTP binding enablesIEAUniProtKB-KW:KW-03421600115GO_REF:0000043UniProtGO_REF:0000043
Gspt1RatGTP binding enablesIEAInterPro:IPR000795 and InterPro:IPR0041611600115GO_REF:0000002InterProGO_REF:0000002
Gspt1RatGTPase activity enablesIEAInterPro:IPR0007951600115GO_REF:0000002InterProGO_REF:0000002
Gspt1RatGTPase activity enablesIEAUniProtKB:P15170 and ensembl:ENSP000003981311600115GO_REF:0000107EnsemblGO_REF:0000107
Gspt1RatGTPase activity enablesIBAPANTHER:PTN000561878 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gspt1RatGTPase activity enablesISOGSPT1 (Homo sapiens)1624291 PMID:15987998RGDPMID:15987998
Gspt1Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Gspt1Ratprotein binding enablesISOGSPT1 (Homo sapiens)1624291UniProtKB:P11940 more ...RGDPMID:12489690 more ...
Gspt1Ratprotein binding enablesISOGSPT1 (Homo sapiens) and UniProtKB:P15170-21624291UniProtKB:P11940 and PMID:20418951RGDPMID:20418951
Gspt1Rattranslation release factor activity enablesISOGSPT1 (Homo sapiens)1624291 PMID:15326224 more ...RGDPMID:15326224 more ...
Gspt1Rattranslation release factor activity enablesIEAUniProtKB:P15170 and ensembl:ENSP000003981311600115GO_REF:0000107EnsemblGO_REF:0000107
Gspt1Rattranslation release factor activity enablesIBACGD:CAL0000176993 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 12 of 12 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1Rattranslation termination pathway  ISOGSPT1 (Homo sapiens)9068941 RGDPMID:22751155 and REF_RGD_ID:10044026

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gspt1RatmRNA decay pathway  IEA 6907045 KEGGrno:03015

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The polypeptide chain-releasing factor GSPT1/eRF3 is proteolytically processed into an IAP-binding protein. Hegde R, etal., J Biol Chem 2003 Oct 3;278(40):38699-706. Epub 2003 Jul 15.
3. Molecular cloning of a novel member of the eukaryotic polypeptide chain-releasing factors (eRF). Its identification as eRF3 interacting with eRF1. Hoshino S, etal., J Biol Chem 1998 Aug 28;273(35):22254-9.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:1300226   PMID:15326224   PMID:18539146   PMID:22658674   PMID:22871113   PMID:30682371  



Gspt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,867,687 - 4,904,186 (+)NCBIGRCr8
mRatBN7.2104,362,528 - 4,397,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl104,362,510 - 4,397,198 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx109,059,243 - 9,093,879 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,580,331 - 8,614,971 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0104,218,577 - 4,253,220 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0104,313,100 - 4,347,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl104,312,863 - 4,446,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,179,171 - 3,213,732 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,249,196 - 4,283,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera103,386,388 - 3,421,025 (+)NCBICelera
Cytogenetic Map10q11NCBI
GSPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,868,128 - 11,916,654 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,868,128 - 11,916,082 (-)EnsemblGRCh38hg38GRCh38
GRCh371611,961,985 - 12,010,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,874,040 - 11,917,309 (-)NCBINCBI36Build 36hg18NCBI36
Build 341611,874,039 - 11,917,309NCBI
Celera1612,136,295 - 12,184,521 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1611,878,684 - 11,927,176 (-)NCBIHuRef
CHM1_11611,962,002 - 12,010,568 (-)NCBICHM1_1
T2T-CHM13v2.01611,904,164 - 11,952,697 (-)NCBIT2T-CHM13v2.0
Gspt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,034,104 - 11,072,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1611,037,156 - 11,072,189 (-)EnsemblGRCm39 Ensembl
GRCm381611,216,240 - 11,254,325 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,219,292 - 11,254,325 (-)EnsemblGRCm38mm10GRCm38
MGSCv371611,216,333 - 11,254,418 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361611,133,977 - 11,167,574 (-)NCBIMGSCv36mm8
Celera1611,847,904 - 11,885,863 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map166.38NCBI
Gspt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554426,704,573 - 6,740,207 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554426,704,272 - 6,740,207 (+)NCBIChiLan1.0ChiLan1.0
GSPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21812,419,646 - 12,462,643 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11616,185,795 - 16,233,237 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,807,248 - 10,854,698 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,031,243 - 12,057,794 (-)NCBIpanpan1.1PanPan1.1panPan2
GSPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1630,931,937 - 30,971,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl630,933,398 - 30,967,476 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha632,312,804 - 32,352,081 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0631,109,408 - 31,149,538 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl631,110,044 - 31,149,470 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1630,923,766 - 30,963,908 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0630,798,059 - 30,838,371 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0631,221,314 - 31,261,658 (+)NCBIUU_Cfam_GSD_1.0
Gspt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344111,783,470 - 111,818,051 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365309,628,844 - 9,650,397 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365309,628,905 - 9,663,491 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,237,194 - 31,273,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,237,155 - 31,273,832 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GSPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1511,335,211 - 11,382,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl511,340,187 - 11,382,310 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606818,763,074 - 18,811,569 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gspt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247826,411,591 - 6,446,182 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Gspt1
175 total Variants

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000003213
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1034063205387112Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat

1 to 9 of 9 rows
RH133814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2104,362,126 - 4,362,333 (+)MAPPERmRatBN7.2
Rnor_6.0104,411,123 - 4,411,329NCBIRnor6.0
Rnor_6.0104,312,651 - 4,312,857NCBIRnor6.0
Rnor_5.0103,178,722 - 3,178,928UniSTSRnor5.0
Rnor_5.0103,277,052 - 3,277,258UniSTSRnor5.0
RGSC_v3.4104,248,747 - 4,248,953UniSTSRGSC3.4
Celera103,385,939 - 3,386,145UniSTS
Cytogenetic Map10q11UniSTS
WI-19180  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2104,396,780 - 4,397,013 (+)MAPPERmRatBN7.2
Rnor_6.0104,445,775 - 4,446,007NCBIRnor6.0
Rnor_6.0104,347,227 - 4,347,459NCBIRnor6.0
Rnor_5.0103,213,298 - 3,213,530UniSTSRnor5.0
Rnor_5.0103,311,704 - 3,311,936UniSTSRnor5.0
RGSC_v3.4104,283,399 - 4,283,631UniSTSRGSC3.4
Celera103,420,591 - 3,420,823UniSTS
Cytogenetic Map10q11UniSTS
RH128035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2104,396,936 - 4,397,138 (+)MAPPERmRatBN7.2
Rnor_6.0104,445,931 - 4,446,132NCBIRnor6.0
Rnor_6.0104,347,383 - 4,347,584NCBIRnor6.0
Rnor_5.0103,213,454 - 3,213,655UniSTSRnor5.0
Rnor_5.0103,311,860 - 3,312,061UniSTSRnor5.0
RGSC_v3.4104,283,555 - 4,283,756UniSTSRGSC3.4
Celera103,420,747 - 3,420,948UniSTS
Cytogenetic Map10q11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000003213   ⟹   ENSRNOP00000003213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,362,510 - 4,395,221 (+)Ensembl
Rnor_6.0 Ensembl104,411,766 - 4,445,769 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000074487   ⟹   ENSRNOP00000067103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,362,548 - 4,397,198 (+)Ensembl
Rnor_6.0 Ensembl104,313,100 - 4,347,659 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091610   ⟹   ENSRNOP00000071846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl104,312,863 - 4,446,200 (+)Ensembl
RefSeq Acc Id: NM_001003978   ⟹   NP_001003978
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,869,549 - 4,904,186 (+)NCBI
mRatBN7.2104,362,576 - 4,397,215 (+)NCBI
Rnor_6.0104,313,100 - 4,347,661 (+)NCBI
Rnor_5.0103,179,171 - 3,213,732 (+)NCBI
RGSC_v3.4104,249,196 - 4,283,833 (+)RGD
Celera103,386,388 - 3,421,025 (+)RGD
Sequence:
RefSeq Acc Id: XM_017596996   ⟹   XP_017452485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,867,687 - 4,904,169 (+)NCBI
mRatBN7.2104,362,528 - 4,397,187 (+)NCBI
Rnor_6.0104,313,294 - 4,347,644 (+)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_001003978 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416816 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452485 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79092 (Get FASTA)   NCBI Sequence Viewer  
  AAN39139 (Get FASTA)   NCBI Sequence Viewer  
  EDL96197 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003213.4
  ENSRNOP00000067103
  ENSRNOP00000067103.1
1 to 9 of 9 rows
RefSeq Acc Id: NP_001003978   ⟸   NM_001003978
- UniProtKB: Q6AYD5 (UniProtKB/TrEMBL),   M0RC00 (UniProtKB/TrEMBL),   F7F6J0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452485   ⟸   XM_017596996
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000067103   ⟸   ENSRNOT00000074487
Ensembl Acc Id: ENSRNOP00000003213   ⟸   ENSRNOT00000003213
Ensembl Acc Id: ENSRNOP00000071846   ⟸   ENSRNOT00000091610
tr-type G

Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYD5-F1-model_v2 AlphaFold Q6AYD5 1-636 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 37 of 37 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-26169 BioCyc
Ensembl Genes ENSRNOG00000046271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003213.7 UniProtKB/TrEMBL
  ENSRNOT00000074487 ENTREZGENE
  ENSRNOT00000074487.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123818 IMAGE-MGC_LOAD
InterPro Ataxin-2_C UniProtKB/TrEMBL
  G_TR_CS UniProtKB/TrEMBL
  GTP-eEF1A_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  ProtSyn_GTP_bd UniProtKB/TrEMBL
  TRAFAC_GTPase_members UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_2 UniProtKB/TrEMBL
  Transl_elong_init/rib_B-barrel UniProtKB/TrEMBL
KEGG Report rno:24420 UniProtKB/TrEMBL
MGC_CLONE MGC:94063 IMAGE-MGC_LOAD
NCBI Gene 24420 ENTREZGENE
PANTHER TRANSLATION FACTOR UniProtKB/TrEMBL
Pfam GTP-eEF1A_C UniProtKB/TrEMBL
  GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
  PAM2 UniProtKB/TrEMBL
PhenoGen Gspt1 PhenoGen
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE EFACTOR_GTP UniProtKB/TrEMBL
  G_TR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046271 RatGTEx
Superfamily-SCOP Elong_init_C UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  Translat_factor UniProtKB/TrEMBL
UniProt F7F6J0 ENTREZGENE, UniProtKB/TrEMBL
  M0RC00 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYD5 ENTREZGENE, UniProtKB/TrEMBL
  Q812C3_RAT UniProtKB/TrEMBL
1 to 37 of 37 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Gspt1  G1 to S phase transition 1  LOC100911685  eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like  Data merged from RGD:6491148 737654 PROVISIONAL
2012-07-05 LOC100911685  eukaryotic peptide chain release factor GTP-binding subunit ERF3B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Gspt1  G1-to-S phase transition 1      Symbol and Name status set to approved 70586 APPROVED