Zfp780b-ps1 (zinc finger protein 780B, pseudogene 1) - Rat Genome Database

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Gene: Zfp780b-ps1 (zinc finger protein 780B, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Zfp780b-ps1
Name: zinc finger protein 780B, pseudogene 1
RGD ID: 2321719
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF780A (zinc finger protein 780A) and ZNF780B (zinc finger protein 780B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; cadmium dichloride.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC100360638; zinc finger protein 780A-like; zinc finger protein 780B-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Zfp780b  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,374,686 - 92,395,951 (-)NCBIGRCr8
mRatBN7.2183,247,793 - 83,265,406 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,244,124 - 83,268,168 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0184,878,906 - 84,896,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,879,973 - 84,894,805 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,096,156 - 86,116,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,016,772 - 83,062,444 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera177,647,540 - 77,665,169 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp780b-ps1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ZFP780B-PS1 mRNACTDPMID:33387578
Zfp780b-ps1Ratatrazine increases expressionEXP 6480464Atrazine results in increased expression of ZFP780B-PS1 mRNACTDPMID:36841081
Zfp780b-ps1Ratcadmium dichloride increases expressionEXP 6480464Cadmium Chloride results in increased expression of ZFP780B-PS1 mRNACTDPMID:33453195
Zfp780b-ps1Ratgentamycin decreases expressionEXP 6480464Gentamicins results in decreased expression of ZFP780B-PS1 mRNACTDPMID:33387578
Zfp780b-ps1Ratparacetamol increases expressionEXP 6480464Acetaminophen results in increased expression of ZFP780B-PS1 mRNACTDPMID:33387578
Zfp780b-ps1Rattetrachloromethane decreases expressionEXP 6480464Carbon Tetrachloride results in decreased expression of ZFP780B-PS1 mRNACTDPMID:33387578
Zfp780b-ps1Rattrichloroethene increases expressionEXP 6480464Trichloroethylene results in increased expression of ZFP780B-PS1 mRNACTDPMID:33387578


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp780b-ps1Ratregulation of DNA-templated transcription involved_inIEAInterPro:IPR001909|InterPro:IPR0360511600115GO_REF:0000002InterProGO_REF:0000002
Zfp780b-ps1Ratregulation of transcription by RNA polymerase II involved_inIBAMGI:109447|MGI:1916455|PANTHER:PTN002393781|RGD:1305084|UniProtKB:Q14587|UniProtKB:Q9NZL31600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp780b-ps1Ratnucleus is_active_inIBAFB:FBgn0263490|MGI:109447|MGI:1890618|MGI:1916160|MGI:2143340|PANTHER:PTN002393781|UniProtKB:P59923|UniProtKB:Q05481|UniProtKB:Q14587|UniProtKB:Q8N393|UniProtKB:Q8WTR7|UniProtKB:Q8WXB4|UniProtKB:Q96JF6|UniProtKB:Q96K83|UniProtKB:Q9NZL31600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp780b-ps1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Zfp780b-ps1Ratzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Zfp780b-ps1
139 total Variants

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:141
Interacting mature miRNAs:151
Transcripts:ENSRNOT00000037975, ENSRNOT00000051665
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 37 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 37 rows
D1S2862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,212,361 - 83,212,636 (+)MAPPERmRatBN7.2
mRatBN7.2946,294,637 - 46,296,180 (+)MAPPERmRatBN7.2
Rnor_6.0950,910,736 - 50,912,277NCBIRnor6.0
Rnor_6.0184,728,205 - 84,728,479NCBIRnor6.0
Rnor_5.0950,577,697 - 50,579,238UniSTSRnor5.0
Rnor_5.0185,958,228 - 85,958,502UniSTSRnor5.0
RGSC_v3.4183,010,606 - 83,010,880UniSTSRGSC3.4
RGSC_v3.4943,233,350 - 43,234,891UniSTSRGSC3.4
Celera943,997,869 - 43,999,414UniSTS
Celera177,612,118 - 77,612,392UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map9q22UniSTS
RH130320  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,247,132 - 83,247,313 (+)MAPPERmRatBN7.2
Rnor_6.0184,878,246 - 84,878,426NCBIRnor6.0
Rnor_5.0186,095,496 - 86,095,676UniSTSRnor5.0
RGSC_v3.4183,046,822 - 83,047,002UniSTSRGSC3.4
Celera177,646,880 - 77,647,060UniSTS
RH 3.4 Map1827.1UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 91 90 59 25 59 6 217 96 93 45 60 31



Ensembl Acc Id: ENSRNOT00000032991   ⟹   ENSRNOP00000034903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,244,124 - 83,268,168 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000037975   ⟹   ENSRNOP00000029434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,251,164 - 83,268,168 (-)Ensembl
Rnor_6.0 Ensembl184,893,778 - 84,894,805 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000051665   ⟹   ENSRNOP00000047014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,247,797 - 83,268,168 (-)Ensembl
Rnor_6.0 Ensembl184,879,973 - 84,894,805 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071261   ⟹   ENSRNOP00000065478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,257,921 - 83,268,168 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114263   ⟹   ENSRNOP00000094540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,258,957 - 83,268,168 (-)Ensembl
RefSeq Acc Id: XR_010059865
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,374,686 - 92,395,951 (-)NCBI
Ensembl Protein ENSRNOP00000029434.6
  ENSRNOP00000034903.7
  ENSRNOP00000047014.2
  ENSRNOP00000065478.3
  ENSRNOP00000094540.1
Ensembl Acc Id: ENSRNOP00000047014   ⟸   ENSRNOT00000051665
Ensembl Acc Id: ENSRNOP00000029434   ⟸   ENSRNOT00000037975
Ensembl Acc Id: ENSRNOP00000094540   ⟸   ENSRNOT00000114263
Ensembl Acc Id: ENSRNOP00000034903   ⟸   ENSRNOT00000032991
Ensembl Acc Id: ENSRNOP00000065478   ⟸   ENSRNOT00000071261
C2H2-type   KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-D4A327-F1-model_v2 AlphaFold D4A327 1-807 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60275 BioCyc
Ensembl Genes ENSRNOG00000018936 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032991.7 UniProtKB/TrEMBL
  ENSRNOT00000037975.6 UniProtKB/TrEMBL
  ENSRNOT00000051665 ENTREZGENE
  ENSRNOT00000051665.6 UniProtKB/TrEMBL
  ENSRNOT00000071261.3 UniProtKB/TrEMBL
  ENSRNOT00000114263.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 100360638 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 525 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 780B UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp780b-ps1 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018936 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6GKT5_RAT UniProtKB/TrEMBL
  D3Z9B3_RAT UniProtKB/TrEMBL
  D3ZAE8_RAT UniProtKB/TrEMBL
  D4A327_RAT UniProtKB/TrEMBL
  M0R7P6_RAT UniProtKB/TrEMBL
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-30 Znf780b  zinc finger protein 780B  LOC100360638  zinc finger protein 780B-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-30 Zfp780b-ps1  zinc finger protein 780B, pseudogene 1  Znf780b  zinc finger protein 780B  Name and Symbol changed 629549 APPROVED
2010-05-06 LOC100360638  zinc finger protein 780B-like      Symbol and Name status set to provisional 70820 PROVISIONAL