Gngt1 (G protein subunit gamma transducin 1) - Rat Genome Database

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Gene: Gngt1 (G protein subunit gamma transducin 1) Rattus norvegicus
Analyze
Symbol: Gngt1
Name: G protein subunit gamma transducin 1
RGD ID: 1595475
Description: Predicted to enable G-protein beta-subunit binding activity. Acts upstream of or within cardiac muscle cell apoptotic process and cellular response to hypoxia. Located in photoreceptor inner segment and photoreceptor outer segment. Part of heterotrimeric G-protein complex. Orthologous to human GNGT1 (G protein subunit gamma transducin 1); PARTICIPATES IN visual phototransduction pathway; chemokine mediated signaling pathway; glutamate signaling pathway; INTERACTS WITH bisphenol A; methoxychlor; 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1; guanine nucleotide binding protein, gamma transducing activity polypeptide 1; guanine nucleotide-binding protein G(T) subunit gamma-T1; heterotrimeric guanine nucleotide-binding protein 3g1; Hg3g1; LOC680149; similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8432,960,945 - 32,963,930 (+)NCBIGRCr8
mRatBN7.2432,006,267 - 32,009,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,006,267 - 32,009,252 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx436,978,973 - 36,981,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0432,905,099 - 32,908,089 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,269,587 - 31,272,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0428,972,339 - 28,975,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl428,972,434 - 28,975,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0428,880,061 - 28,883,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,831,171 - 28,834,156 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera427,392,552 - 27,395,537 (+)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Ratpleomorphic xanthoastrocytoma  ISOGNGT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Gngt1Ratprostate cancer  ISOGNGT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Ratautism spectrum disorder  ISOGNGT1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35663546

1 to 20 of 39 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Rat4,4'-sulfonyldiphenol increases expressionISOGNGT1 (Homo sapiens)6480464bisphenol S results in increased expression of GNGT1 mRNACTDPMID:34979203
Gngt1Ratacrylamide increases expressionISOGNGT1 (Homo sapiens)6480464Acrylamide results in increased expression of GNGT1 mRNACTDPMID:32763439
Gngt1Rataflatoxin B1 decreases methylationISOGNGT1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of GNGT1 geneCTDPMID:27153756
Gngt1Ratall-trans-retinoic acid increases expressionISOGNGT1 (Homo sapiens)6480464Tretinoin results in increased expression of GNGT1 mRNACTDPMID:23724009
Gngt1Ratarsane affects methylationISOGNGT1 (Homo sapiens)6480464Arsenic affects the methylation of GNGT1 geneCTDPMID:25304211
Gngt1Ratarsenic atom affects methylationISOGNGT1 (Homo sapiens)6480464Arsenic affects the methylation of GNGT1 geneCTDPMID:25304211
Gngt1Ratbarium(0) multiple interactionsISOGNGT1 (Homo sapiens)6480464[GNB1 protein binds to GNGT1 protein] inhibits the reaction [CACNA1B protein results in increased transport of Barium] more ...CTDPMID:11007869
Gngt1Ratbis(2-ethylhexyl) phthalate multiple interactionsISOGngt1 (Mus musculus)6480464Diethylhexyl Phthalate inhibits the reaction [[Streptozocin co-treated with Dietary Fats] results in decreased expression of GNGT1 mRNA]CTDPMID:33484791
Gngt1Ratbisphenol A increases expressionISOGngt1 (Mus musculus)6480464bisphenol A results in increased expression of GNGT1 mRNACTDPMID:21932408
Gngt1Ratbisphenol A affects methylationISOGngt1 (Mus musculus)6480464bisphenol A affects the methylation of GNGT1 promoterCTDPMID:27334623
Gngt1Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of GNGT1 mRNACTDPMID:25181051
Gngt1Ratcarbon nanotube decreases expressionISOGngt1 (Mus musculus)6480464Nanotubes more ...CTDPMID:25620056
Gngt1RatCGP 52608 multiple interactionsISOGNGT1 (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to GNGT1 gene]CTDPMID:28238834
Gngt1Ratclothianidin decreases expressionISOGNGT1 (Homo sapiens)6480464clothianidin results in decreased expression of GNGT1 mRNACTDPMID:31626844
Gngt1Ratdorsomorphin multiple interactionsISOGNGT1 (Homo sapiens)6480464[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...CTDPMID:27188386
Gngt1Ratentinostat increases expressionISOGNGT1 (Homo sapiens)6480464entinostat results in increased expression of GNGT1 mRNACTDPMID:27188386
Gngt1Ratiron dichloride increases expressionISOGNGT1 (Homo sapiens)6480464ferrous chloride results in increased expression of GNGT1 mRNACTDPMID:35984750
Gngt1Ratlipopolysaccharide multiple interactionsISOGNGT1 (Homo sapiens)6480464[S-(1 more ...CTDPMID:35811015
Gngt1Ratlipopolysaccharide increases expressionISOGNGT1 (Homo sapiens)6480464Lipopolysaccharides results in increased expression of GNGT1 mRNACTDPMID:35811015
Gngt1Ratmercury atom increases expressionISOGNGT1 (Homo sapiens)6480464Mercury results in increased expression of GNGT1 mRNACTDPMID:16823088

1 to 20 of 39 rows

Biological Process
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Ratcardiac muscle cell apoptotic process acts_upstream_of_or_withinIDA 8554041PMID:19723622MGI 
Gngt1Ratcellular response to hypoxia acts_upstream_of_or_withinIDA 8554041PMID:19723622MGI 
Gngt1Rateye photoreceptor cell development acts_upstream_of_or_withinISOGngt1 (Mus musculus)1624291MGI:3783323 PMID:18367617RGDPMID:18367617
Gngt1Rateye photoreceptor cell development acts_upstream_of_or_withinIEAUniProtKB:Q61012 and ensembl:ENSMUSP000000316731600115GO_REF:0000107EnsemblGO_REF:0000107
Gngt1RatG protein-coupled receptor signaling pathway involved_inIBAMGI:102705 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gngt1RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR001770 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Gngt1Ratphototransduction acts_upstream_of_or_withinISOGngt1 (Mus musculus)1624291MGI:3783323 PMID:18367617RGDPMID:18367617
Gngt1Ratphototransduction acts_upstream_of_or_withinIEAUniProtKB:Q61012 and ensembl:ENSMUSP000000316731600115GO_REF:0000107EnsemblGO_REF:0000107
Gngt1Ratprotein localization acts_upstream_of_or_withinIEAUniProtKB:Q61012 and ensembl:ENSMUSP000000316731600115GO_REF:0000107EnsemblGO_REF:0000107
Gngt1Ratprotein localization acts_upstream_of_or_withinISOGngt1 (Mus musculus)1624291MGI:3783323 PMID:18367617RGDPMID:18367617
Gngt1Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043
1 to 11 of 11 rows

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Ratheterotrimeric G-protein complex  IDA 1599009 RGD 
Gngt1Ratheterotrimeric G-protein complex part_ofIEAInterPro:IPR0017701600115GO_REF:0000002InterProGO_REF:0000002
Gngt1Ratheterotrimeric G-protein complex part_ofIBAPANTHER:PTN001013516 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gngt1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Gngt1Ratphotoreceptor inner segment  IDA 1599009 RGD 
Gngt1Ratphotoreceptor outer segment  IDA 6893629 RGD 
Gngt1Ratphotoreceptor outer segment  IDA 1599009 RGD 
Gngt1Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Gngt1Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1RatG-protein beta-subunit binding enablesIBAPANTHER:PTN001013516 and UniProtKB:P597681600115GO_REF:0000033GO_CentralGO_REF:0000033
Gngt1RatG-protein beta-subunit binding enablesIEAInterPro:IPR0017701600115GO_REF:0000002InterProGO_REF:0000002
Gngt1Ratprotein binding enablesISOGNGT1 (Homo sapiens)1624291UniProtKB:G5E9M4 more ...RGDPMID:25416956 more ...

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Ratvisual phototransduction pathway   ISOGNGT1 (Homo sapiens)6893539 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gngt1Ratchemokine mediated signaling pathway  IEA 6907045 KEGGrno:04062
Gngt1Ratglutamate signaling pathway  IEA 6907045 KEGGrno:04724
Gngt1Ratvisual phototransduction pathway   IEA 6907045 KEGGrno:04744

#
Reference Title
Reference Citation
1. Photoreceptor signaling: supporting vision across a wide range of light intensities. Arshavsky VY and Burns ME, J Biol Chem. 2012 Jan 13;287(3):1620-6. Epub 2011 Nov 10.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Activator of G protein signaling 8 (AGS8) is required for hypoxia-induced apoptosis of cardiomyocytes: role of G betagamma and connexin 43 (CX43). Sato M, etal., J Biol Chem. 2009 Nov 6;284(45):31431-40. doi: 10.1074/jbc.M109.014068. Epub 2009 Sep 1.
7. Photoreceptor function of retinal transplants implicated by light-dark shift of S-antigen and rod transducin. Seiler MJ, etal., Vision Res. 1999 Jul;39(15):2589-96.
8. Massive light-driven translocation of transducin between the two major compartments of rod cells: a novel mechanism of light adaptation. Sokolov M, etal., Neuron. 2002 Mar 28;34(1):95-106.
PMID:18367617  



Gngt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8432,960,945 - 32,963,930 (+)NCBIGRCr8
mRatBN7.2432,006,267 - 32,009,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,006,267 - 32,009,252 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx436,978,973 - 36,981,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0432,905,099 - 32,908,089 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,269,587 - 31,272,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0428,972,339 - 28,975,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl428,972,434 - 28,975,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0428,880,061 - 28,883,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,831,171 - 28,834,156 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera427,392,552 - 27,395,537 (+)NCBICelera
Cytogenetic Map4q13NCBI
GNGT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,906,567 - 93,911,265 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,591,573 - 93,911,265 (+)EnsemblGRCh38hg38GRCh38
GRCh37793,535,879 - 93,540,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,373,756 - 93,378,421 (+)NCBINCBI36Build 36hg18NCBI36
Build 34793,180,470 - 93,185,039NCBI
Celera788,234,120 - 88,238,785 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,143,534 - 88,148,199 (+)NCBIHuRef
CHM1_1793,466,052 - 93,470,717 (+)NCBICHM1_1
T2T-CHM13v2.0795,143,218 - 95,147,911 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,864,986 - 92,869,650 (+)NCBI
Gngt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3963,989,082 - 3,997,441 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl63,993,792 - 3,997,436 (+)EnsemblGRCm39 Ensembl
GRCm3863,989,082 - 3,997,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl63,993,792 - 3,997,436 (+)EnsemblGRCm38mm10GRCm38
MGSCv3763,944,012 - 3,947,436 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3663,944,012 - 3,947,436 (+)NCBIMGSCv36mm8
Celera64,140,623 - 4,144,045 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Gngt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,643,674 - 10,658,933 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543210,653,508 - 10,657,811 (+)NCBIChiLan1.0ChiLan1.0
GNGT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26111,743,081 - 111,747,788 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,007,723 - 160,012,430 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,839,639 - 85,859,844 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1799,446,623 - 99,451,188 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl799,446,623 - 99,451,185 (+)Ensemblpanpan1.1panPan2
GNGT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,081,676 - 19,420,261 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,415,510 - 19,420,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1418,975,305 - 18,979,836 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01418,894,814 - 19,234,730 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,213,599 - 19,234,733 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,382,144 - 19,386,683 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,117,968 - 19,122,498 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,375,285 - 19,379,818 (+)NCBIUU_Cfam_GSD_1.0
Gngt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,714,879 - 32,731,965 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680367,608 - 71,541 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493680367,933 - 71,508 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNGT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl973,403,740 - 73,719,161 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1973,403,647 - 73,717,746 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2980,665,797 - 80,677,705 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Gngt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624813590,580 - 594,085 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624813579,173 - 594,039 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Gngt1
13 total Variants

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:89
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000014219
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat

1 to 10 of 31 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 1 2 34 20 20 16 7 16 32 12 34 2 23 4



Ensembl Acc Id: ENSRNOT00000014219   ⟹   ENSRNOP00000014219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl432,006,267 - 32,009,252 (+)Ensembl
Rnor_6.0 Ensembl428,972,434 - 28,975,419 (+)Ensembl
RefSeq Acc Id: NM_001135777   ⟹   NP_001129249
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,960,945 - 32,963,930 (+)NCBI
mRatBN7.2432,006,267 - 32,009,252 (+)NCBI
Rnor_6.0428,972,434 - 28,975,419 (+)NCBI
Rnor_5.0428,880,061 - 28,883,215 (+)NCBI
RGSC_v3.4428,831,171 - 28,834,156 (+)RGD
Celera427,392,552 - 27,395,537 (+)RGD
Sequence:
Protein RefSeqs NP_001129249 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAG9553626 (Get FASTA)   NCBI Sequence Viewer  
  EDL84393 (Get FASTA)   NCBI Sequence Viewer  
  EDL84395 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014219
  ENSRNOP00000014219.4
RefSeq Acc Id: NP_001129249   ⟸   NM_001135777
- UniProtKB: D4AAI1 (UniProtKB/TrEMBL),   A6K2B2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014219   ⟸   ENSRNOT00000014219
G protein gamma

Name Modeler Protein Id AA Range Protein Structure
AF-D4AAI1-F1-model_v2 AlphaFold D4AAI1 1-74 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692855
Promoter ID:EPDNEW_R3379
Type:single initiation site
Name:Gngt1_1
Description:G protein subunit gamma transducin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0428,972,487 - 28,972,547EPDNEW


1 to 21 of 21 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45729 BioCyc
Ensembl Genes ENSRNOG00000010546 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014219 ENTREZGENE
  ENSRNOT00000014219.5 UniProtKB/TrEMBL
Gene3D-CATH 4.10.260.10 UniProtKB/TrEMBL
InterPro G-protein_gamma-like UniProtKB/TrEMBL
  GGL_sf UniProtKB/TrEMBL
  Gprotein-gamma UniProtKB/TrEMBL
KEGG Report rno:680149 UniProtKB/TrEMBL
NCBI Gene 680149 ENTREZGENE
PANTHER Gprotein-gamma UniProtKB/TrEMBL
Pfam G-gamma UniProtKB/TrEMBL
PhenoGen Gngt1 PhenoGen
PRINTS GPROTEING UniProtKB/TrEMBL
PROSITE G_PROTEIN_GAMMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010546 RatGTEx
SMART G_gamma UniProtKB/TrEMBL
  GGL UniProtKB/TrEMBL
Superfamily-SCOP G-protein_gamma-like UniProtKB/TrEMBL
UniProt A6K2B2 ENTREZGENE, UniProtKB/TrEMBL
  D4AAI1 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Gngt1  G protein subunit gamma transducin 1  Gngt1  guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-22 Gngt1  guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1  LOC680149  similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680149  similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)  LOC683332  similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)  Data merged from RGD:1588037 1643240 APPROVED
2006-11-20 LOC680149  similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683332  similar to Guanine nucleotide-binding protein G(T) gamma-T1 subunit precursor (Transducin gamma chain)      Symbol and Name status set to provisional 70820 PROVISIONAL