Pla2g4f (phospholipase A2, group IVF) - Rat Genome Database

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Gene: Pla2g4f (phospholipase A2, group IVF) Rattus norvegicus
Analyze
Symbol: Pla2g4f
Name: phospholipase A2, group IVF
RGD ID: 1593370
Description: Predicted to enable calcium ion binding activity; calcium-dependent phospholipid binding activity; and phospholipase activity. Predicted to be involved in glycerophospholipid catabolic process. Predicted to act upstream of or within arachidonate secretion; cellular response to antibiotic; and prostaglandin biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol; ruffle membrane; and vesicle. Orthologous to human PLA2G4F (phospholipase A2 group IVF); PARTICIPATES IN alpha-linolenic acid metabolic pathway; arachidonic acid metabolic pathway; ether lipid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytosolic phospholipase A2 zeta; LOC691907; similar to cytosolic phospholipase A2 zeta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,702,603 - 127,720,429 (-)NCBIGRCr8
mRatBN7.23107,249,053 - 107,266,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,250,075 - 107,264,689 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03112,068,617 - 112,083,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,072,330 - 112,084,144 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,616,780 - 118,631,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,786,813 - 106,800,543 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3106,157,546 - 106,174,304 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pla2g4fRatBloom syndrome  ISOPLA2G4F (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Pla2g4fRatcolorectal cancer  ISOPLA2G4F (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532

1 to 20 of 38 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pla2g4fRat1,2-dimethylhydrazine increases expressionISOPla2g4f (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of PLA2G4F mRNACTDPMID:22206623
Pla2g4fRat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOPla2g4f (Mus musculus)64804642 more ...CTDPMID:31388691
Pla2g4fRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PLA2G4F mRNACTDPMID:33387578
Pla2g4fRat2,3,7,8-Tetrachlorodibenzofuran increases expressionEXP 64804642 more ...CTDPMID:32109520
Pla2g4fRat2-hydroxypropanoic acid increases expressionISOPLA2G4F (Homo sapiens)6480464Lactic Acid results in increased expression of PLA2G4F mRNACTDPMID:30851411
Pla2g4fRat3,4-methylenedioxymethamphetamine decreases expressionISOPla2g4f (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of PLA2G4F mRNACTDPMID:20188158
Pla2g4fRataflatoxin B1 increases methylationISOPLA2G4F (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of PLA2G4F geneCTDPMID:27153756
Pla2g4fRataristolochic acid A increases expressionISOPLA2G4F (Homo sapiens)6480464aristolochic acid I results in increased expression of PLA2G4F mRNACTDPMID:33212167
Pla2g4fRatarsane multiple interactionsISOPLA2G4F (Homo sapiens)6480464[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of PLA2G4F mRNACTDPMID:32525701
Pla2g4fRatarsenic atom multiple interactionsISOPLA2G4F (Homo sapiens)6480464[sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of PLA2G4F mRNACTDPMID:32525701
Pla2g4fRatAzoxymethane multiple interactionsISOPla2g4f (Mus musculus)6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of PLA2G4F mRNACTDPMID:29950665
Pla2g4fRatbenzene increases expressionISOPla2g4f (Mus musculus)6480464Benzene results in increased expression of PLA2G4F mRNACTDPMID:34624356
Pla2g4fRatbeta-damascenone increases expressionISOPla2g4f (Mus musculus)6480464beta-damascenone results in increased expression of PLA2G4F mRNACTDPMID:22982537
Pla2g4fRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of PLA2G4F mRNACTDPMID:25181051
Pla2g4fRatdextran sulfate multiple interactionsISOPla2g4f (Mus musculus)6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of PLA2G4F mRNACTDPMID:29950665
Pla2g4fRatdimethylarsinic acid multiple interactionsISOPla2g4f (Mus musculus)6480464[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in increased expression of PLA2G4F mRNACTDPMID:34876320
Pla2g4fRatendosulfan increases expressionEXP 6480464Endosulfan results in increased expression of PLA2G4F mRNACTDPMID:29391264
Pla2g4fRatethylparaben increases expressionISOPLA2G4F (Homo sapiens)6480464ethyl-p-hydroxybenzoate results in increased expression of PLA2G4F mRNACTDPMID:37690743
Pla2g4fRatfulvestrant increases methylationISOPLA2G4F (Homo sapiens)6480464Fulvestrant results in increased methylation of PLA2G4F geneCTDPMID:31601247
Pla2g4fRatgenistein decreases expressionISOPla2g4f (Mus musculus)6480464Genistein results in decreased expression of PLA2G4F mRNACTDPMID:32186404

1 to 20 of 38 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pla2g4fRatarachidonate secretion acts_upstream_of_or_withinISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatarachidonate secretion acts_upstream_of_or_withinIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatcellular response to antibiotic acts_upstream_of_or_withinIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatcellular response to antibiotic acts_upstream_of_or_withinISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatfatty acid transport acts_upstream_of_or_withinISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatfatty acid transport acts_upstream_of_or_withinIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatglycerophospholipid catabolic process involved_inIBAMGI:1195256 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRatlipid catabolic process involved_inIEAUniProtKB-KW:KW-04421600115GO_REF:0000043UniProtGO_REF:0000043
Pla2g4fRatlipid catabolic process involved_inIEAUniRule:UR0004155831600115GO_REF:0000104UniProtGO_REF:0000104
Pla2g4fRatlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Pla2g4fRatphospholipid catabolic process involved_inIEAInterPro:IPR0026421600115GO_REF:0000002InterProGO_REF:0000002
Pla2g4fRatprostaglandin biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatprostaglandin biosynthetic process acts_upstream_of_or_withinISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
1 to 13 of 13 rows

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pla2g4fRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Pla2g4fRatcytoplasm located_inIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatcytoplasm located_inISOPla2g4f (Mus musculus)1624291 PMID:15866882RGDPMID:15866882
Pla2g4fRatcytosol located_inIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
Pla2g4fRatcytosol located_inISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatcytosol is_active_inIBAMGI:1195256 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Pla2g4fRatruffle membrane located_inIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatruffle membrane located_inISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatruffle membrane is_active_inIBAMGI:2685493 and PANTHER:PTN0085047631600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRatvesicle is_active_inIBAMGI:2685493 and PANTHER:PTN0085047631600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRatvesicle located_inIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatvesicle located_inISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
1 to 14 of 14 rows

Molecular Function
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pla2g4fRatcalcium ion binding enablesIBAPANTHER:PTN000842854 and UniProtKB:P477121600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRatcalcium ion binding enablesIEAInterPro:IPR0418471600115GO_REF:0000002InterProGO_REF:0000002
Pla2g4fRatcalcium-dependent phospholipase A2 activity enablesIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatcalcium-dependent phospholipase A2 activity enablesISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatcalcium-dependent phospholipase A2 activity enablesIBAMGI:1195256 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRatcalcium-dependent phospholipid binding enablesIBAPANTHER:PTN000842854 and UniProtKB:P477121600115GO_REF:0000033GO_CentralGO_REF:0000033
Pla2g4fRathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Pla2g4fRathydrolase activity enablesIEAUniRule:UR0004155831600115GO_REF:0000104UniProtGO_REF:0000104
Pla2g4fRatlysophospholipase activity enablesISOPla2g4f (Mus musculus)1624291 PMID:17293613RGDPMID:17293613
Pla2g4fRatlysophospholipase activity enablesIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Pla2g4fRatphospholipase A2 activity enablesIEAUniProtKB:Q50L41 and ensembl:ENSMUSP000000626071600115GO_REF:0000107EnsemblGO_REF:0000107
Pla2g4fRatphospholipase A2 activity enablesIEAARBA:ARBA000285441600115GO_REF:0000117UniProtGO_REF:0000117
Pla2g4fRatphospholipase A2 activity enablesIEARHEA:158011600115GO_REF:0000116RHEAGO_REF:0000116
Pla2g4fRatphospholipase A2 activity enablesIEAEC:3.1.1.41600115GO_REF:0000003UniProtGO_REF:0000003
Pla2g4fRatphospholipase A2 activity enablesISOPla2g4f (Mus musculus)1624291 PMID:15866882 and PMID:17293613RGDPMID:15866882 and PMID:17293613
Pla2g4fRatphospholipase activity enablesIEAInterPro:IPR0026421600115GO_REF:0000002InterProGO_REF:0000002
1 to 17 of 17 rows

Imported Annotations - KEGG (archival)

1 to 13 of 13 rows
1 to 13 of 13 rows

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:15866882   PMID:17293613  



Pla2g4f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,702,603 - 127,720,429 (-)NCBIGRCr8
mRatBN7.23107,249,053 - 107,266,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,250,075 - 107,264,689 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03112,068,617 - 112,083,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,072,330 - 112,084,144 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,616,780 - 118,631,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,786,813 - 106,800,543 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3106,157,546 - 106,174,304 (-)NCBICelera
Cytogenetic Map3q35NCBI
PLA2G4F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,139,034 - 42,156,636 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,139,034 - 42,156,636 (-)EnsemblGRCh38hg38GRCh38
GRCh371542,431,232 - 42,448,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,220,688 - 40,236,102 (-)NCBINCBI36Build 36hg18NCBI36
Celera1519,201,035 - 19,216,542 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1519,281,808 - 19,297,315 (-)NCBIHuRef
CHM1_11542,551,786 - 42,567,298 (-)NCBICHM1_1
T2T-CHM13v2.01539,945,057 - 39,962,659 (-)NCBIT2T-CHM13v2.0
Pla2g4f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,130,433 - 120,144,646 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,130,438 - 120,144,646 (-)EnsemblGRCm39 Ensembl
GRCm382120,299,952 - 120,314,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,299,957 - 120,314,165 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,125,693 - 120,139,901 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,991,407 - 120,005,606 (-)NCBIMGSCv36mm8
Celera2121,454,326 - 121,468,544 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.31NCBI
Pla2g4f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,873,356 - 8,889,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,876,560 - 8,889,764 (-)NCBIChiLan1.0ChiLan1.0
PLA2G4F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,382,843 - 31,400,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,536,001 - 35,553,667 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,095,474 - 21,110,983 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,253,819 - 39,271,482 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,253,819 - 39,271,482 (-)Ensemblpanpan1.1panPan2
PLA2G4F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,150,325 - 9,165,610 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,150,971 - 9,164,608 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,205,449 - 9,223,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,281,972 - 9,299,572 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,285,977 - 9,299,492 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,202,339 - 9,219,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,307,320 - 9,324,957 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,441,666 - 9,459,261 (-)NCBIUU_Cfam_GSD_1.0
Pla2g4f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,591,311 - 87,607,176 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,439,866 - 5,454,331 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,439,389 - 5,454,437 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G4F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,201,069 - 129,217,008 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,200,568 - 129,218,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,142,382 - 144,149,527 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G4F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,835,777 - 40,852,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,836,266 - 40,852,054 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,149,142 - 100,167,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g4f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,271,674 - 9,279,991 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,271,237 - 9,286,101 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pla2g4f
131 total Variants

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:96
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000010959
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat

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alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 45 113 83 82 51 25 51 6 201 90 93 43 59 31



Ensembl Acc Id: ENSRNOT00000010959   ⟹   ENSRNOP00000010959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3107,250,075 - 107,264,689 (-)Ensembl
Rnor_6.0 Ensembl3112,072,330 - 112,084,144 (-)Ensembl
RefSeq Acc Id: XM_063284968   ⟹   XP_063141038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83127,702,603 - 127,720,429 (-)NCBI
RefSeq Acc Id: XM_063284969   ⟹   XP_063141039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83127,702,603 - 127,720,429 (-)NCBI
Protein RefSeqs NP_001418722 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418723 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141038 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141039 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010959
  ENSRNOP00000010959.6
Ensembl Acc Id: ENSRNOP00000010959   ⟸   ENSRNOT00000010959
RefSeq Acc Id: XP_063141039   ⟸   XM_063284969
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063141038   ⟸   XM_063284968
- Peptide Label: isoform X1
C2   PLA2c

Name Modeler Protein Id AA Range Protein Structure
AF-D3Z9B7-F1-model_v2 AlphaFold D3Z9B7 1-733 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48179 BioCyc
Ensembl Genes ENSRNOG00000008135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010959 ENTREZGENE
  ENSRNOT00000010959.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  Cytosolic phospholipase A2 catalytic domain UniProtKB/TrEMBL
InterPro Acyl_Trfase/lysoPlipase UniProtKB/TrEMBL
  C2_Ca-dep UniProtKB/TrEMBL
  C2_cPLA2 UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  cPLA2_C2 UniProtKB/TrEMBL
  Lysophospholipase_cat_dom UniProtKB/TrEMBL
NCBI Gene 691907 ENTREZGENE
PANTHER CYTOSOLIC PHOSPHOLIPASE A2 UniProtKB/TrEMBL
  CYTOSOLIC PHOSPHOLIPASE A2 ZETA UniProtKB/TrEMBL
Pfam cPLA2_C2 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  PLA2_B UniProtKB/TrEMBL
PhenoGen Pla2g4f PhenoGen
PROSITE PLA2C UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008135 RatGTEx
SMART PLAc UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP Acyl_Trfase/lysoPlipase UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
UniProt D3Z9B7 ENTREZGENE, UniProtKB/TrEMBL
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Pla2g4f  phospholipase A2, group IVF  LOC691907  similar to cytosolic phospholipase A2 zeta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC691907  similar to cytosolic phospholipase A2 zeta  LOC688015  similar to cytosolic phospholipase A2 zeta  Data merged from RGD:1593647 1643240 APPROVED
2006-11-20 LOC691907  similar to cytosolic phospholipase A2 zeta      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC688015  similar to cytosolic phospholipase A2 zeta      Symbol and Name status set to provisional 70820 PROVISIONAL