 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
Molecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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Cellular Component
Molecular Function
Molecular Pathway AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway Annotations
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Pipeline to import KEGG annotations from KEGG into RGD |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Pla2g4f (Rattus norvegicus - Norway rat) |
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| PLA2G4F (Homo sapiens - human) |
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| Pla2g4f (Mus musculus - house mouse) |
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| Pla2g4f (Chinchilla lanigera - long-tailed chinchilla) |
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| PLA2G4F (Pan paniscus - bonobo/pygmy chimpanzee) |
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| PLA2G4F (Canis lupus familiaris - dog) |
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| Pla2g4f (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| PLA2G4F (Sus scrofa - pig) |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | |||||||||||||||
| Medium | |||||||||||||||
| Low | 11 | 6 | 10 | 4 | 4 | 2 | 1 | 10 | 17 | 9 | 10 | 4 | 6 | 8 | |
| Below cutoff | 11 | 33 | 13 | 11 | 1 | 7 | 16 | 8 | 2 | 1 | 34 | 29 | 2 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_006224568 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006234810 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008762122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008775482 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008775483 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592205 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592206 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017602594 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07053510 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07053511 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01024646 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | XM_006224568 ⟹ XP_006224630 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAGGCATGGGGAGATGGCTTCCGAGCAGAGAATGTGGTTTAAGCCCAAAAAGCACTCAACCAhide sequence |
| RefSeq Acc Id: | XM_006234810 ⟹ XP_006234872 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GTCCTCTACTGGGACCTGAGCTGCTGCTGGCCATGCCCTGGACTCTCCAGCCGAAGTGGCTGGChide sequence |
| RefSeq Acc Id: | XM_008762122 ⟹ XP_008760344 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCTCTACTGGGACCTGAGCTGCTGCTGGCCATGCCCTGGACTCTCCAGCCGAAGTGGCTGGChide sequence |
| RefSeq Acc Id: | XM_008775482 ⟹ XP_008773704 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAGGCATGGGGAGATGGCTTCCGAGCAGAGAATGTGGTTTAAGCCCAAAAAGCACTCAACCAhide sequence |
| RefSeq Acc Id: | XM_008775483 ⟹ XP_008773705 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAGGCATGGGGAGATGGCTTCCGAGCAGAGAATGTGGTTTAAGCCCAAAAAGCACTCAACCAhide sequence |
| RefSeq Acc Id: | XM_017592205 ⟹ XP_017447694 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCTCTACTGGGACCTGAGCTGCTGCTGGCCATGCCCTGGACTCTCCAGCCGAAGTGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017592206 ⟹ XP_017447695 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCTCTACTGGGACCTGAGCTGCTGCTGGCCATGCCCTGGACTCTCCAGCCGAAGTGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017602594 ⟹ XP_017458083 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAGGCATGGGGAGATGGCTTCCGAGCAGAGAATGTGGTTTAAGCCCAAAAAGCACTCAACCAhide sequence |
Protein Sequences| Protein RefSeqs | XP_006224630 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006234872 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008760344 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008773704 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008773705 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447694 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447695 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017458083 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_006224630 ⟸ XM_006224568 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRQETHPYYDLQVKVLRARNIQHTDKLSKhide sequence |
| RefSeq Acc Id: | XP_006234872 ⟸ XM_006234810 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRQETHPYYDLQVKVLRARNIQHTDKLSKhide sequence |
| RefSeq Acc Id: | XP_008773705 ⟸ XM_008775483 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRQETHPYYDLQVKVLRARNIQHTDKLSKhide sequence |
| RefSeq Acc Id: | XP_008773704 ⟸ XM_008775482 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRQETHPYYDLQVKVLRARNIQHTDKLSKhide sequence |
| RefSeq Acc Id: | XP_008760344 ⟸ XM_008762122 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRQETHPYYDLQVKVLRARNIQHTDKLSKhide sequence |
| RefSeq Acc Id: | XP_017458083 ⟸ XM_017602594 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRETHPYYDLQVKVLRARNIQHTDKLSKAhide sequence |
| RefSeq Acc Id: | XP_017447695 ⟸ XM_017592206 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRETHPYYDLQVKVLRARNIQHTDKLSKAhide sequence |
| RefSeq Acc Id: | XP_017447694 ⟸ XM_017592205 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPWTLQPKWLASKGLPLLGAILLRETEKRETQWKHWRQETHPYYDLQVKVLRARNIQHTDKLSKhide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1593370 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000008135 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000010959 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000010959 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.60.40.150 | UniProtKB/TrEMBL |
| InterPro | Acyl_Trfase/lysoPlipase | UniProtKB/TrEMBL |
| C2_Ca-dep | UniProtKB/TrEMBL | |
| C2_cPLA2 | UniProtKB/TrEMBL | |
| C2_domain_sf | UniProtKB/TrEMBL | |
| cPLA2_C2 | UniProtKB/TrEMBL | |
| Lysophospholipase_cat_dom | UniProtKB/TrEMBL | |
| NCBI Gene | 691907 | ENTREZGENE |
| Pfam | cPLA2_C2 | UniProtKB/TrEMBL |
| PF00168 | UniProtKB/TrEMBL | |
| PLA2_B | UniProtKB/TrEMBL | |
| PhenoGen | Pla2g4f | PhenoGen |
| PROSITE | PLA2C | UniProtKB/TrEMBL |
| PS50004 | UniProtKB/TrEMBL | |
| SMART | PLAc | UniProtKB/TrEMBL |
| SM00239 | UniProtKB/TrEMBL | |
| Superfamily-SCOP | Acyl_Trfase/lysoPlipase | UniProtKB/TrEMBL |
| UniProt | D3Z9B7_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-03-06 | Pla2g4f | phospholipase A2, group IVF | LOC691907 | similar to cytosolic phospholipase A2 zeta | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-01-09 | LOC691907 | similar to cytosolic phospholipase A2 zeta | LOC688015 | similar to cytosolic phospholipase A2 zeta | Data Merged | 1643240 | APPROVED |
| 2006-11-20 | LOC691907 | similar to cytosolic phospholipase A2 zeta | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2006-11-20 | LOC688015 | similar to cytosolic phospholipase A2 zeta | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Pla2g4f | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1593370 |
| Created: | 2006-11-20 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-08-20 |
| Status: | ACTIVE |
