Symbol:
Ccdc6
Name:
coiled-coil domain containing 6
RGD ID:
1587433
Description:
Predicted to enable identical protein binding activity. Predicted to be located in cytosol. Orthologous to human CCDC6 (coiled-coil domain containing 6); PARTICIPATES IN thyroid cancer pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
coiled-coil domain-containing protein 6; LOC691155; similar to coiled-coil domain containing 6
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 18,431,243 - 18,527,227 (-) NCBI GRCr8 mRatBN7.2 20 18,432,177 - 18,528,186 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 20 18,433,695 - 18,528,658 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 20 19,729,005 - 19,825,219 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 19,732,894 - 19,825,150 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 20 21,865,813 - 21,961,494 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 20 19,160,547 - 19,253,922 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 20 19,819,225 - 19,915,464 (-) NCBI Celera Cytogenetic Map 20 p11 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Ccdc6 Rat (+)-catechin multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Catechin co-treated with Grape Seed Proanthocyanidins] results in increased expression of CCDC6 mRNA CTD PMID:24763279 Ccdc6 Rat 1,1-dichloroethene decreases expression ISO Ccdc6 (Mus musculus) 6480464 vinylidene chloride results in decreased expression of CCDC6 mRNA CTD PMID:26682919 Ccdc6 Rat 1,2-dimethylhydrazine multiple interactions ISO Ccdc6 (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CCDC6 mRNA CTD PMID:22206623 Ccdc6 Rat 17beta-estradiol increases expression ISO Ccdc6 (Mus musculus) 6480464 Estradiol results in increased expression of CCDC6 mRNA CTD PMID:39298647 Ccdc6 Rat 2,3',4,4',5-Pentachlorobiphenyl increases expression ISO Ccdc6 (Mus musculus) 6480464 2 more ... CTD PMID:31388691 Ccdc6 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO CCDC6 (Homo sapiens) 6480464 Tetrachlorodibenzodioxin results in decreased expression of CCDC6 mRNA CTD PMID:17517823 Ccdc6 Rat 2,3,7,8-Tetrachlorodibenzofuran decreases expression EXP 6480464 2 more ... CTD PMID:32109520 Ccdc6 Rat 2-methylcholine affects expression ISO CCDC6 (Homo sapiens) 6480464 beta-methylcholine affects the expression of CCDC6 mRNA CTD PMID:21179406 Ccdc6 Rat 3-chloropropane-1,2-diol increases expression EXP 6480464 alpha-Chlorohydrin results in increased expression of CCDC6 protein CTD PMID:34915118 Ccdc6 Rat 3-methylcholanthrene multiple interactions ISO CCDC6 (Homo sapiens) 6480464 Methylcholanthrene promotes the reaction [AHR protein binds to CCDC6 promoter] CTD PMID:20348232 Ccdc6 Rat 4,4'-sulfonyldiphenol increases expression ISO CCDC6 (Homo sapiens) 6480464 bisphenol S results in increased expression of CCDC6 protein CTD PMID:34186270 Ccdc6 Rat 6-propyl-2-thiouracil decreases expression EXP 6480464 Propylthiouracil results in decreased expression of CCDC6 mRNA CTD PMID:24780913 Ccdc6 Rat 6-propyl-2-thiouracil increases expression EXP 6480464 Propylthiouracil results in increased expression of CCDC6 mRNA CTD PMID:30047161 Ccdc6 Rat actinomycin D multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Dactinomycin co-treated with nutlin 3] results in increased secretion of CCDC6 protein CTD PMID:38460933 Ccdc6 Rat aflatoxin B1 decreases methylation ISO CCDC6 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of CCDC6 gene CTD PMID:27153756 Ccdc6 Rat all-trans-retinoic acid increases expression EXP 6480464 Tretinoin results in increased expression of CCDC6 mRNA CTD PMID:20488242 Ccdc6 Rat all-trans-retinoic acid decreases expression ISO CCDC6 (Homo sapiens) 6480464 Tretinoin results in decreased expression of CCDC6 mRNA CTD PMID:33167477 Ccdc6 Rat amitrole increases expression EXP 6480464 Amitrole results in increased expression of CCDC6 mRNA CTD PMID:30047161 Ccdc6 Rat amphetamine decreases expression EXP 6480464 Amphetamine results in decreased expression of CCDC6 mRNA CTD PMID:30779732 Ccdc6 Rat aristolochic acid A decreases expression ISO CCDC6 (Homo sapiens) 6480464 aristolochic acid I results in decreased expression of CCDC6 mRNA CTD PMID:33212167 Ccdc6 Rat arsane affects methylation ISO CCDC6 (Homo sapiens) 6480464 Arsenic affects the methylation of CCDC6 gene CTD PMID:25304211 Ccdc6 Rat arsane multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of CCDC6 mRNA CTD PMID:39836092 Ccdc6 Rat arsenic atom affects methylation ISO CCDC6 (Homo sapiens) 6480464 Arsenic affects the methylation of CCDC6 gene CTD PMID:25304211 Ccdc6 Rat arsenic atom multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of CCDC6 mRNA CTD PMID:39836092 Ccdc6 Rat arsenous acid multiple interactions ISO CCDC6 (Homo sapiens) 6480464 Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to CCDC6 protein] CTD PMID:26598702 Ccdc6 Rat benzo[a]pyrene decreases methylation ISO Ccdc6 (Mus musculus) 6480464 Benzo(a)pyrene results in decreased methylation of CCDC6 intron CTD PMID:27901495 Ccdc6 Rat benzo[a]pyrene diol epoxide I decreases expression ISO CCDC6 (Homo sapiens) 6480464 7 more ... CTD PMID:19150397 Ccdc6 Rat bisphenol A affects expression EXP 6480464 bisphenol A affects the expression of CCDC6 mRNA CTD PMID:25181051 Ccdc6 Rat bisphenol A decreases expression ISO CCDC6 (Homo sapiens) 6480464 bisphenol A results in decreased expression of CCDC6 protein CTD PMID:37567409 Ccdc6 Rat bisphenol A multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [bisphenol A co-treated with Fulvestrant] results in decreased methylation of CCDC6 gene CTD PMID:31601247 Ccdc6 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of CCDC6 mRNA CTD PMID:34947998 Ccdc6 Rat bisphenol A increases expression ISO CCDC6 (Homo sapiens) 6480464 bisphenol A results in increased expression of CCDC6 mRNA and bisphenol A results in increased expression of CCDC6 protein CTD PMID:33670352 and PMID:34186270 Ccdc6 Rat bisphenol AF increases expression ISO CCDC6 (Homo sapiens) 6480464 bisphenol AF results in increased expression of CCDC6 protein CTD PMID:34186270 Ccdc6 Rat bortezomib decreases expression ISO CCDC6 (Homo sapiens) 6480464 Bortezomib results in decreased expression of CCDC6 mRNA CTD PMID:20977926 Ccdc6 Rat buspirone increases expression EXP 6480464 Buspirone results in increased expression of CCDC6 mRNA CTD PMID:24136188 Ccdc6 Rat cadmium atom multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC6 mRNA CTD PMID:35301059 Ccdc6 Rat cadmium dichloride multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC6 mRNA CTD PMID:35301059 Ccdc6 Rat caffeine decreases phosphorylation ISO CCDC6 (Homo sapiens) 6480464 Caffeine results in decreased phosphorylation of CCDC6 protein CTD PMID:35688186 Ccdc6 Rat chloropicrin decreases expression ISO CCDC6 (Homo sapiens) 6480464 chloropicrin results in decreased expression of CCDC6 mRNA CTD PMID:26352163 Ccdc6 Rat chlorpyrifos decreases expression ISO Ccdc6 (Mus musculus) 6480464 Chlorpyrifos results in decreased expression of CCDC6 mRNA CTD PMID:37019170 Ccdc6 Rat cisplatin decreases expression ISO CCDC6 (Homo sapiens) 6480464 Cisplatin results in decreased expression of CCDC6 mRNA CTD PMID:27594783 Ccdc6 Rat cobalt dichloride increases expression ISO CCDC6 (Homo sapiens) 6480464 cobaltous chloride results in increased expression of CCDC6 mRNA CTD PMID:19320972 Ccdc6 Rat coumarin decreases phosphorylation ISO CCDC6 (Homo sapiens) 6480464 coumarin results in decreased phosphorylation of CCDC6 protein CTD PMID:35688186 Ccdc6 Rat cyclosporin A increases expression ISO CCDC6 (Homo sapiens) 6480464 Cyclosporine results in increased expression of CCDC6 mRNA CTD PMID:20106945 and PMID:25562108 Ccdc6 Rat diarsenic trioxide multiple interactions ISO CCDC6 (Homo sapiens) 6480464 Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to CCDC6 protein] CTD PMID:26598702 Ccdc6 Rat disodium selenite increases expression ISO CCDC6 (Homo sapiens) 6480464 Sodium Selenite results in increased expression of CCDC6 mRNA CTD PMID:18175754 Ccdc6 Rat doxorubicin decreases expression ISO CCDC6 (Homo sapiens) 6480464 Doxorubicin results in decreased expression of CCDC6 mRNA CTD PMID:29803840 Ccdc6 Rat enzyme inhibitor multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of CCDC6 protein CTD PMID:23301498 Ccdc6 Rat ethanol affects splicing ISO Ccdc6 (Mus musculus) 6480464 Ethanol affects the splicing of CCDC6 mRNA CTD PMID:30319688 Ccdc6 Rat ethanol affects expression ISO Ccdc6 (Mus musculus) 6480464 Ethanol affects the expression of CCDC6 mRNA CTD PMID:30319688 Ccdc6 Rat etoposide increases response to substance ISO CCDC6 (Homo sapiens) 6480464 CCDC6 results in increased susceptibility to Etoposide CTD PMID:22655027 Ccdc6 Rat etoposide decreases response to substance ISO CCDC6 (Homo sapiens) 6480464 CCDC6 results in decreased susceptibility to Etoposide CTD PMID:22363533 Ccdc6 Rat fenthion decreases expression ISO Ccdc6 (Mus musculus) 6480464 Fenthion results in decreased expression of CCDC6 mRNA CTD PMID:34813904 Ccdc6 Rat folic acid multiple interactions ISO Ccdc6 (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CCDC6 mRNA CTD PMID:22206623 Ccdc6 Rat folic acid decreases expression ISO Ccdc6 (Mus musculus) 6480464 Folic Acid results in decreased expression of CCDC6 mRNA CTD PMID:25629700 Ccdc6 Rat FR900359 decreases phosphorylation ISO CCDC6 (Homo sapiens) 6480464 FR900359 results in decreased phosphorylation of CCDC6 protein CTD PMID:37730182 Ccdc6 Rat fulvestrant multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [bisphenol A co-treated with Fulvestrant] results in decreased methylation of CCDC6 gene CTD PMID:31601247 Ccdc6 Rat gentamycin increases expression EXP 6480464 Gentamicins results in increased expression of CCDC6 mRNA CTD PMID:22061828 Ccdc6 Rat hexadecanoic acid decreases phosphorylation ISO CCDC6 (Homo sapiens) 6480464 Palmitic Acid results in decreased phosphorylation of CCDC6 protein CTD PMID:28073184 Ccdc6 Rat hydrogen peroxide decreases expression ISO CCDC6 (Homo sapiens) 6480464 Hydrogen Peroxide results in decreased expression of CCDC6 mRNA CTD PMID:18951874 Ccdc6 Rat hydrogen peroxide multiple interactions ISO Ccdc6 (Mus musculus) 6480464 [Hydrogen Peroxide co-treated with N-(oxo-5 more ... CTD PMID:31494107 Ccdc6 Rat ivermectin decreases expression ISO CCDC6 (Homo sapiens) 6480464 Ivermectin results in decreased expression of CCDC6 protein CTD PMID:32959892 Ccdc6 Rat lead diacetate multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [lead acetate co-treated with zinc protoporphyrin] results in decreased expression of CCDC6 mRNA CTD PMID:22839698 Ccdc6 Rat leflunomide increases expression EXP 6480464 leflunomide results in increased expression of CCDC6 mRNA CTD PMID:24136188 Ccdc6 Rat levofloxacin increases expression EXP 6480464 Levofloxacin results in increased expression of CCDC6 mRNA CTD PMID:24136188 Ccdc6 Rat maneb multiple interactions ISO Ccdc6 (Mus musculus) 6480464 [Maneb co-treated with Paraquat] results in decreased expression of CCDC6 mRNA CTD PMID:36117858 Ccdc6 Rat methyl methanesulfonate decreases expression ISO CCDC6 (Homo sapiens) 6480464 Methyl Methanesulfonate results in decreased expression of CCDC6 mRNA CTD PMID:23649840 Ccdc6 Rat nefazodone increases expression EXP 6480464 nefazodone results in increased expression of CCDC6 mRNA CTD PMID:24136188 Ccdc6 Rat nimesulide increases expression EXP 6480464 nimesulide results in increased expression of CCDC6 mRNA CTD PMID:24136188 Ccdc6 Rat Nor-9-carboxy-delta9-THC multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Cannabinoids results in increased abundance of 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid] which affects the methylation of CCDC6 gene CTD PMID:30521419 Ccdc6 Rat Nutlin-3 multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [Dactinomycin co-treated with nutlin 3] results in increased secretion of CCDC6 protein CTD PMID:38460933 Ccdc6 Rat oxaliplatin multiple interactions EXP 6480464 [oxaliplatin co-treated with Topotecan] results in decreased expression of CCDC6 mRNA CTD PMID:25729387 Ccdc6 Rat paracetamol affects expression ISO Ccdc6 (Mus musculus) 6480464 Acetaminophen affects the expression of CCDC6 mRNA CTD PMID:17562736 Ccdc6 Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of CCDC6 mRNA CTD PMID:33387578 Ccdc6 Rat paraquat multiple interactions ISO Ccdc6 (Mus musculus) 6480464 [Maneb co-treated with Paraquat] results in decreased expression of CCDC6 mRNA CTD PMID:36117858 Ccdc6 Rat pentachlorophenol increases expression ISO Ccdc6 (Mus musculus) 6480464 Pentachlorophenol results in increased expression of CCDC6 mRNA CTD PMID:23892564 Ccdc6 Rat rotenone increases expression EXP 6480464 Rotenone results in increased expression of CCDC6 mRNA CTD PMID:28374803 Ccdc6 Rat SB 431542 multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [LDN 193189 co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in decreased expression of CCDC6 protein CTD PMID:37664457 Ccdc6 Rat sodium arsenite multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of CCDC6 mRNA CTD PMID:39836092 Ccdc6 Rat titanium dioxide increases methylation ISO Ccdc6 (Mus musculus) 6480464 titanium dioxide results in increased methylation of CCDC6 gene CTD PMID:35295148 Ccdc6 Rat titanium dioxide decreases methylation ISO Ccdc6 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of CCDC6 gene and titanium dioxide results in decreased methylation of CCDC6 promoter CTD PMID:35295148 Ccdc6 Rat topotecan multiple interactions EXP 6480464 [oxaliplatin co-treated with Topotecan] results in decreased expression of CCDC6 mRNA CTD PMID:25729387 Ccdc6 Rat triphenyl phosphate affects expression ISO CCDC6 (Homo sapiens) 6480464 triphenyl phosphate affects the expression of CCDC6 mRNA CTD PMID:37042841 Ccdc6 Rat trovafloxacin multiple interactions ISO Ccdc6 (Mus musculus) 6480464 [trovafloxacin co-treated with lipopolysaccharide and E coli O55-B5] results in increased expression of CCDC6 mRNA CTD PMID:18930950 Ccdc6 Rat tungsten decreases expression ISO Ccdc6 (Mus musculus) 6480464 Tungsten results in decreased expression of CCDC6 mRNA CTD PMID:30912803 Ccdc6 Rat valproic acid affects expression ISO Ccdc6 (Mus musculus) 6480464 Valproic Acid affects the expression of CCDC6 mRNA CTD PMID:17963808 Ccdc6 Rat valproic acid affects expression ISO CCDC6 (Homo sapiens) 6480464 Valproic Acid affects the expression of CCDC6 mRNA CTD PMID:25979313 Ccdc6 Rat zinc protoporphyrin multiple interactions ISO CCDC6 (Homo sapiens) 6480464 [lead acetate co-treated with zinc protoporphyrin] results in decreased expression of CCDC6 mRNA CTD PMID:22839698
Imported Annotations - KEGG (archival)
(+)-catechin (ISO) 1,1-dichloroethene (ISO) 1,2-dimethylhydrazine (ISO) 17beta-estradiol (ISO) 2,3',4,4',5-Pentachlorobiphenyl (ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) 2,3,7,8-Tetrachlorodibenzofuran (EXP) 2-methylcholine (ISO) 3-chloropropane-1,2-diol (EXP) 3-methylcholanthrene (ISO) 4,4'-sulfonyldiphenol (ISO) 6-propyl-2-thiouracil (EXP) actinomycin D (ISO) aflatoxin B1 (ISO) all-trans-retinoic acid (EXP,ISO) amitrole (EXP) amphetamine (EXP) aristolochic acid A (ISO) arsane (ISO) arsenic atom (ISO) arsenous acid (ISO) benzo[a]pyrene (ISO) benzo[a]pyrene diol epoxide I (ISO) bisphenol A (EXP,ISO) bisphenol AF (ISO) bortezomib (ISO) buspirone (EXP) cadmium atom (ISO) cadmium dichloride (ISO) caffeine (ISO) chloropicrin (ISO) chlorpyrifos (ISO) cisplatin (ISO) cobalt dichloride (ISO) coumarin (ISO) cyclosporin A (ISO) diarsenic trioxide (ISO) disodium selenite (ISO) doxorubicin (ISO) enzyme inhibitor (ISO) ethanol (ISO) etoposide (ISO) fenthion (ISO) folic acid (ISO) FR900359 (ISO) fulvestrant (ISO) gentamycin (EXP) hexadecanoic acid (ISO) hydrogen peroxide (ISO) ivermectin (ISO) lead diacetate (ISO) leflunomide (EXP) levofloxacin (EXP) maneb (ISO) methyl methanesulfonate (ISO) nefazodone (EXP) nimesulide (EXP) Nor-9-carboxy-delta9-THC (ISO) Nutlin-3 (ISO) oxaliplatin (EXP) paracetamol (EXP,ISO) paraquat (ISO) pentachlorophenol (ISO) rotenone (EXP) SB 431542 (ISO) sodium arsenite (ISO) titanium dioxide (ISO) topotecan (EXP) triphenyl phosphate (ISO) trovafloxacin (ISO) tungsten (ISO) valproic acid (ISO) zinc protoporphyrin (ISO)
Ccdc6 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 18,431,243 - 18,527,227 (-) NCBI GRCr8 mRatBN7.2 20 18,432,177 - 18,528,186 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 20 18,433,695 - 18,528,658 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 20 19,729,005 - 19,825,219 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 19,732,894 - 19,825,150 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 20 21,865,813 - 21,961,494 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 20 19,160,547 - 19,253,922 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 20 19,819,225 - 19,915,464 (-) NCBI Celera Cytogenetic Map 20 p11 NCBI
CCDC6 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 59,788,747 - 59,906,556 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 59,788,747 - 59,906,556 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 61,548,505 - 61,666,314 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 61,218,527 - 61,336,824 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 61,218,527 - 61,336,314 NCBI Celera 10 54,814,284 - 54,932,343 (-) NCBI Celera Cytogenetic Map 10 q21.2 NCBI HuRef 10 55,536,106 - 55,653,768 (-) NCBI HuRef CHM1_1 10 61,830,646 - 61,948,180 (-) NCBI CHM1_1 T2T-CHM13v2.0 10 60,642,477 - 60,761,263 (-) NCBI T2T-CHM13v2.0
Ccdc6 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 10 69,932,709 - 70,029,030 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 10 69,932,951 - 70,029,030 (+) Ensembl GRCm39 Ensembl GRCm38 10 70,096,878 - 70,193,200 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 10 70,097,121 - 70,193,200 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 10 69,559,869 - 69,655,948 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 10 69,492,478 - 69,588,557 (+) NCBI MGSCv36 mm8 Celera 10 71,188,144 - 71,284,304 (+) NCBI Celera Cytogenetic Map 10 B5.3 NCBI cM Map 10 36.68 NCBI
Ccdc6 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955425 13,344,926 - 13,444,802 (-) NCBI ChiLan1.0 ChiLan1.0
CCDC6 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 72,000,268 - 72,118,624 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 72,005,589 - 72,123,475 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 56,322,619 - 56,440,410 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 58,537,553 - 58,655,454 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 58,537,553 - 58,655,454 (-) Ensembl panpan1.1 panPan2
CCDC6 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 4 11,966,366 - 12,077,797 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 4 11,970,097 - 12,077,484 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 4 12,163,831 - 12,275,285 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 4 12,228,962 - 12,340,439 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 4 12,232,696 - 12,340,130 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 4 12,209,626 - 12,317,324 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 4 12,324,478 - 12,435,855 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 4 12,635,446 - 12,747,202 (-) NCBI UU_Cfam_GSD_1.0
Ccdc6 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 69,006,842 - 69,119,891 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936614 3,092,882 - 3,394,303 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936614 3,093,083 - 3,206,147 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CCDC6 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 63,175,655 - 63,299,373 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 63,175,650 - 63,300,025 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 68,150,467 - 68,274,633 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CCDC6 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 71,382,842 - 71,501,589 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 71,383,032 - 71,497,403 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 32,267,861 - 32,386,892 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Ccdc6
.
Predicted Target Of
Count of predictions: 32 Count of miRNA genes: 31 Interacting mature miRNAs: 32 Transcripts: ENSRNOT00000032159 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
4889610 Pancm3 Pancreatic morphology QTL 3 3.75 0.001 pancreas mass (VT:0010144) pancreas wet weight (CMO:0000626) 20 17617832 47606836 Rat 1641915 Colcr9 Colorectal carcinoma resistance QTL 9 2.97 0.0024 intestine integrity trait (VT:0010554) benign colorectal tumor number (CMO:0001795) 20 1530655 46530655 Rat 2317057 Aia27 Adjuvant induced arthritis QTL 27 2.83 joint integrity trait (VT:0010548) right rear ankle joint diameter (CMO:0002150) 20 2892597 26381954 Rat 7387283 Uae44 Urinary albumin excretion QTL 44 0.1712 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 20 1 26123605 Rat 4889870 Pur30 Proteinuria QTL 30 19 0.005 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 20 8042410 29322208 Rat 7411668 Foco32 Food consumption QTL 32 8 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 20 1 36600972 Rat 2305926 Iddm37 Insulin dependent diabetes mellitus QTL 37 6 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 20 1527842 46527842 Rat 1354642 Despr15 Despair related QTL 15 0.0027 locomotor behavior trait (VT:0001392) amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) 20 1 24159021 Rat 1600382 Edcs3 Endometrial carcinoma susceptibility QTL3 3.5 0.003 uterus morphology trait (VT:0001120) percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) 20 1 25159026 Rat 8694189 Bw153 Body weight QTL 153 3.13 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 20 1 29191651 Rat 9590109 Sffal8 Serum free fatty acids level QTL 8 5.32 0.01 blood free fatty acid amount (VT:0001553) plasma free fatty acids level (CMO:0000546) 20 1 29191651 Rat 9590275 Scort15 Serum corticosterone level QTL 15 3.48 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 20 1 29191651 Rat 9589155 Insul32 Insulin level QTL 32 6.38 0.001 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 20 1 29191651 Rat 7411650 Foco23 Food consumption QTL 23 20.7 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 20 1 29191651 Rat 7411652 Foco24 Food consumption QTL 24 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 20 11757515 54435887 Rat 2317851 Alcrsp22 Alcohol response QTL 22 3.2 0.05 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 20 1 27339237 Rat 1598816 Memor12 Memory QTL 12 2.4 exploratory behavior trait (VT:0010471) average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) 20 2606836 47606836 Rat 2317880 Alcrsp25 Alcohol response QTL 25 2.3 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 20 17697550 54435887 Rat 1641893 Alcrsp7 Alcohol response QTL 7 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 20 1 27339237 Rat 6893685 Bw111 Body weight QTL 111 2.7 0.004 body mass (VT:0001259) body weight (CMO:0000012) 20 1 32578807 Rat 9590252 Scort12 Serum corticosterone level QTL 12 20.46 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 20 1 36600972 Rat 9590092 Insglur9 Insulin/glucose ratio QTL 9 18.38 0.001 blood insulin amount (VT:0001560) calculated plasma insulin level (CMO:0002170) 20 11757515 54435887 Rat
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000032159 ⟹ ENSRNOP00000033185
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 20 18,433,695 - 18,528,658 (-) Ensembl Rnor_6.0 Ensembl 20 19,732,894 - 19,825,150 (-) Ensembl
RefSeq Acc Id:
NM_001427373 ⟹ NP_001414302
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 20 18,431,243 - 18,527,227 (-) NCBI
Ensembl Acc Id:
ENSRNOP00000033185 ⟸ ENSRNOT00000032159
RefSeq Acc Id:
NP_001414302 ⟸ NM_001427373
- UniProtKB:
D4AEK9 (UniProtKB/TrEMBL)
RGD ID: 13701560 Promoter ID: EPDNEW_R12080 Type: initiation region Name: Ccdc6_1 Description: coiled-coil domain containing 6 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 20 19,825,220 - 19,825,280 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2013-05-24
Ccdc6
coiled-coil domain containing 6
LOC687820
similar to coiled-coil domain containing 6
Data merged from RGD:1596283
1643240 APPROVED
2008-03-06
Ccdc6
coiled-coil domain containing 6
LOC691155
similar to coiled-coil domain containing 6
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2006-11-20
LOC687820
similar to coiled-coil domain containing 6
Symbol and Name status set to provisional
70820 PROVISIONAL
2006-11-19
LOC691155
similar to coiled-coil domain containing 6
Symbol and Name status set to provisional
70820 PROVISIONAL
