Snrpd1-ps1 (small nuclear ribonucleoprotein D1 polypeptide, pseudogene 1) - Rat Genome Database

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Gene: Snrpd1-ps1 (small nuclear ribonucleoprotein D1 polypeptide, pseudogene 1) Rattus norvegicus
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Symbol: Snrpd1-ps1
Name: small nuclear ribonucleoprotein D1 polypeptide, pseudogene 1
RGD ID: 1586777
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC684715; similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen)
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8933,052,409 - 33,052,974 (+)NCBIGRCr8
mRatBN7.2925,556,102 - 25,556,765 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0929,361,463 - 29,362,114 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0928,199,250 - 28,199,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4921,955,905 - 21,960,792 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera923,104,911 - 23,105,562 (+)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline


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Variants in Snrpd1-ps1
10 total Variants

1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat

1 to 10 of 27 rows
RH124565  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,556,361 - 25,556,542 (+)MAPPERmRatBN7.2
Rnor_6.0929,361,761 - 29,361,941NCBIRnor6.0
Rnor_5.0928,199,531 - 28,199,711UniSTSRnor5.0
RGSC_v3.4921,960,628 - 21,960,808UniSTSRGSC3.4
Celera923,105,209 - 23,105,389UniSTS
Cytogenetic Map18p13UniSTS
AW464517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,702,901 - 1,702,997 (+)MAPPERmRatBN7.2
mRatBN7.2925,556,248 - 25,556,351 (+)MAPPERmRatBN7.2
Rnor_6.0929,361,648 - 29,361,750NCBIRnor6.0
Rnor_5.0928,199,418 - 28,199,520UniSTSRnor5.0
RGSC_v3.4921,960,515 - 21,960,617UniSTSRGSC3.4
Celera923,105,096 - 23,105,198UniSTS
Cytogenetic Map18p13UniSTS






GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-27984 BioCyc
NCBI Gene 684715 ENTREZGENE
PhenoGen Snrpd1-ps1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Snrpd1-ps1  small nuclear ribonucleoprotein D1 polypeptide, pseudogene 1  LOC684715  similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen)  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC684715  similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen)      Symbol and Name status set to provisional 70820 PROVISIONAL