Symbol:
Alkbh6
Name:
alkB homolog 6
RGD ID:
1566318
Description:
Predicted to enable metal ion binding activity. Predicted to be located in focal adhesion and nucleoplasm. Predicted to be active in nucleus. Orthologous to human ALKBH6 (alkB homolog 6); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
alkB, alkylation repair homolog 6; alkB, alkylation repair homolog 6 (E. coli); alkylated DNA repair protein alkB homolog 6; alpha-ketoglutarate-dependent dioxygenase alkB homolog 6; LOC108348106; LOC292780; MGC112693; probable alpha-ketoglutarate-dependent dioxygenase ABH6; similar to hypothetical protein MGC15677
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
ALKBH6 (alkB homolog 6)
HGNC
Ensembl, Inparanoid, OMA, OrthoDB, Panther
Mus musculus (house mouse):
Alkbh6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Alkbh6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
ALKBH6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
ALKBH6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Alkbh6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
ALKBH6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
ALKBH6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Alkbh6 (alkB homolog 6)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
ALKBH6 (alkB homolog 6)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Alkbh6 (alkB homolog 6)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
alkbh6 (alkB homolog 6)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
B0564.2
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
CG6144
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
alkbh6
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 94,690,979 - 94,696,429 (+) NCBI GRCr8 mRatBN7.2 1 85,563,511 - 85,568,977 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 85,563,592 - 85,568,973 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 90,979,724 - 90,985,119 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 99,447,940 - 99,453,284 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 92,737,985 - 92,743,380 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 88,766,872 - 88,772,243 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 88,766,872 - 88,772,242 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 90,957,133 - 90,962,466 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 92,094,314 - 92,099,684 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 85,255,190 - 85,260,560 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 1 79,937,451 - 79,942,812 (+) NCBI Celera Cytogenetic Map 1 q21 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Alkbh6 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 94,690,979 - 94,696,429 (+) NCBI GRCr8 mRatBN7.2 1 85,563,511 - 85,568,977 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 85,563,592 - 85,568,973 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 90,979,724 - 90,985,119 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 99,447,940 - 99,453,284 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 92,737,985 - 92,743,380 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 88,766,872 - 88,772,243 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 88,766,872 - 88,772,242 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 90,957,133 - 90,962,466 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 92,094,314 - 92,099,684 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 85,255,190 - 85,260,560 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 1 79,937,451 - 79,942,812 (+) NCBI Celera Cytogenetic Map 1 q21 NCBI
ALKBH6 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 19 36,009,120 - 36,014,239 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 19 36,009,120 - 36,014,239 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 19 36,500,022 - 36,505,141 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 19 41,191,862 - 41,196,981 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 19 33,214,202 - 33,219,321 (-) NCBI Celera Cytogenetic Map 19 q13.12 NCBI HuRef 19 33,005,571 - 33,010,690 (-) NCBI HuRef CHM1_1 19 36,501,371 - 36,506,490 (-) NCBI CHM1_1 T2T-CHM13v2.0 19 38,554,919 - 38,560,038 (-) NCBI T2T-CHM13v2.0
Alkbh6 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 7 30,008,178 - 30,013,728 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 7 30,008,142 - 30,013,729 (+) Ensembl GRCm39 Ensembl GRCm38 7 30,308,753 - 30,314,303 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 7 30,308,717 - 30,314,304 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 7 31,093,772 - 31,099,322 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 7 30,017,513 - 30,023,063 (+) NCBI MGSCv36 mm8 Celera 7 24,904,872 - 24,910,436 (+) NCBI Celera Cytogenetic Map 7 B1 NCBI cM Map 7 17.38 NCBI
Alkbh6 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955468 2,575,568 - 2,582,032 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955468 2,575,469 - 2,580,632 (+) NCBI ChiLan1.0 ChiLan1.0
ALKBH6 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 20 42,010,025 - 42,015,162 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 19 43,993,666 - 43,998,802 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 19 32,927,382 - 32,932,519 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 19 41,675,899 - 41,681,015 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 19 41,675,899 - 41,681,015 (-) Ensembl panpan1.1 panPan2
ALKBH6 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 116,671,147 - 116,676,784 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 1 116,670,841 - 116,680,515 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 116,076,834 - 116,082,479 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 117,274,284 - 117,279,932 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 117,274,286 - 117,279,361 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 116,838,319 - 116,843,973 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 116,461,885 - 116,467,539 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 117,517,091 - 117,522,745 (+) NCBI UU_Cfam_GSD_1.0
Alkbh6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
ALKBH6 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 45,384,957 - 45,390,244 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 45,384,955 - 45,390,247 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 40,787,631 - 40,792,954 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
ALKBH6 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 6 30,920,192 - 30,925,659 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 6 30,920,185 - 30,925,362 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666073 8,715,150 - 8,720,323 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Alkbh6 (Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HetGla_female_1.0 Ensembl NW_004624794 10,271,116 - 10,274,845 (-) Ensembl HetGla_female_1.0 HetGla_female_1.0 Ensembl hetGla2 HetGla_female_1.0 Ensembl NW_004624794 10,275,555 - 10,280,725 (-) Ensembl HetGla_female_1.0 HetGla_female_1.0 Ensembl hetGla2 HetGla 1.0 NW_004624794 10,271,107 - 10,281,055 (-) NCBI HetGla_female_1.0 HetGla 1.0 hetGla2
.
Predicted Target Of
Count of predictions: 180 Count of miRNA genes: 84 Interacting mature miRNAs: 89 Transcripts: ENSRNOT00000051259, ENSRNOT00000071180 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
2313059 Bss55 Bone structure and strength QTL 55 3.2 0.0001 tibia size trait (VT:0100001) tibia midshaft cross-sectional area (CMO:0001717) 1 43284731 118944897 Rat 631688 Hcas2 Hepatocarcinoma susceptibility QTL 2 3 0.0001 liver integrity trait (VT:0010547) liver tumorous lesion number (CMO:0001068) 1 5925874 115540829 Rat 1578649 Bmd8 Bone mineral density QTL 8 4.9 femur mineral mass (VT:0010011) trabecular volumetric bone mineral density (CMO:0001729) 1 49393172 94393172 Rat 1582234 Gluco18 Glucose level QTL 18 3.4 0.0003 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 1 78479925 123479925 Rat 1358359 Sradr1 Stress Responsive Adrenal Weight QTL 1 4.74 adrenal gland mass (VT:0010420) both adrenal glands wet weight (CMO:0000164) 1 30882023 123479925 Rat 634314 Niddm44 Non-insulin dependent diabetes mellitus QTL 44 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 1 49393289 199050459 Rat 1578780 Cm52 Cardiac mass QTL 52 3.3 0.0001 heart mass (VT:0007028) heart wet weight (CMO:0000069) 1 81591954 219808434 Rat 1578654 Bss10 Bone structure and strength QTL 10 4 femur morphology trait (VT:0000559) femoral neck cortical cross-sectional area (CMO:0001702) 1 49393172 159356837 Rat 1554320 Bmd1 Bone mineral density QTL 1 12.2 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 1 509108 86060548 Rat 2300324 Fetw1 Fetal weight QTL 1 12.1 0.005 fetal growth trait (VT:0004201) fetal body weight (CMO:0002080) 1 85424647 100358001 Rat 2302059 Pia36 Pristane induced arthritis QTL 36 3.8 0.001 blood immunoglobulin amount (VT:0002460) serum immunoglobulin G1 level (CMO:0002115) 1 43333002 88333002 Rat 1300121 Hrtrt1 Heart rate QTL 1 3.7 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 1 65789093 115540829 Rat 7421628 Bp361 Blood pressure QTL 361 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 1 66023617 118608521 Rat 631495 Bp96 Blood pressure QTL 96 4.52 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 1 22340647 102268831 Rat 70225 Bp58 Blood pressure QTL 58 3.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 1 32356093 162846471 Rat 631512 Scl6 Serum cholesterol level QTL 6 9.6 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 1 72197680 90508767 Rat 2298545 Neuinf8 Neuroinflammation QTL 8 4.6 nervous system integrity trait (VT:0010566) spinal cord beta-2 microglobulin mRNA level (CMO:0002125) 1 57336763 151090257 Rat 2313072 Bss53 Bone structure and strength QTL 53 4.3 0.0001 tibia length (VT:0004357) tibia length (CMO:0000450) 1 43284731 118944897 Rat 10059597 Bp377 Blood pressure QTL 377 3.42 0.025 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 1 32737458 199368955 Rat 2313078 Bss54 Bone structure and strength QTL 54 3.5 0.0001 tibia area (VT:1000281) tibia midshaft cross-sectional area (CMO:0001717) 1 43284731 118944897 Rat 1549903 Bp267 Blood pressure QTL 267 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 1 77876254 106047988 Rat 2313083 Bmd74 Bone mineral density QTL 74 4 0.0001 tibia mineral mass (VT:1000283) total volumetric bone mineral density (CMO:0001728) 1 82174743 118944897 Rat 2313402 Anxrr24 Anxiety related response QTL 24 aggression-related behavior trait (VT:0015014) tameness/aggressiveness composite score (CMO:0002136) 1 48963584 144267916 Rat 4889494 Scort2 Serum corticosterone level QTL 2 4.2 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 1 80592172 125592172 Rat 61342 Bp27 Blood pressure QTL 27 3.4 0.0006 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 1 56732668 98773277 Rat 1300172 Bp172 Blood pressure QTL 172 3.56 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 1 32737273 90665040 Rat 61344 Bp29 Blood pressure QTL 29 7.5 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 1 78350581 123350581 Rat 1358192 Ept13 Estrogen-induced pituitary tumorigenesis QTL 13 3.4 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 1 77494165 122494165 Rat 2313094 Bss58 Bone structure and strength QTL 58 3.7 0.0001 tibia strength trait (VT:1000284) tibia total energy absorbed before break (CMO:0001736) 1 43284731 118944897 Rat 6903308 Scl36 Serum cholesterol QTL 36 2 0.0125 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 1 53863041 90532583 Rat 2300164 Bmd44 Bone mineral density QTL 44 5.4 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 1 56949932 101949932 Rat 2313099 Bss56 Bone structure and strength QTL 56 2.4 0.0001 tibia size trait (VT:0100001) tibia midshaft endosteal cross-sectional area (CMO:0001716) 1 43284731 118944897 Rat 2313098 Bmd70 Bone mineral density QTL 70 3.6 0.0001 tibia mineral mass (VT:1000283) compact volumetric bone mineral density (CMO:0001730) 1 43284731 118944897 Rat 738022 Anxrr13 Anxiety related response QTL 13 4.6 0.00039 locomotor behavior trait (VT:0001392) number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514) 1 83547917 128547917 Rat 152025249 Scl82 Serum cholesterol level QTL 82 4.77 blood cholesterol amount (VT:0000180) 1 50343510 99980958 Rat 10054135 Gmadr2 Adrenal mass QTL 2 1.97 0.0129 adrenal gland mass (VT:0010420) both adrenal glands wet weight (CMO:0000164) 1 77857876 122857876 Rat 7411712 Strs4 Sensitivity to stroke QTL 4 8.7 cerebrum integrity trait (VT:0010549) percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932) 1 78430536 123430536 Rat 2313051 Bss57 Bone structure and strength QTL 57 3.7 0.0001 tibia strength trait (VT:1000284) bone polar moment of inertia (CMO:0001558) 1 43284731 118944897 Rat 61433 Cia2 Collagen induced arthritis QTL 2 5 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 1 78430754 91209302 Rat
AI844915
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 1 85,563,010 - 85,563,149 (+) MAPPER mRatBN7.2 mRatBN7.2 1 85,563,010 - 85,563,149 (-) MAPPER mRatBN7.2 Rnor_6.0 1 88,766,277 - 88,766,415 NCBI Rnor6.0 Rnor_6.0 1 90,962,959 - 90,963,097 NCBI Rnor6.0 Rnor_5.0 1 92,100,141 - 92,100,279 UniSTS Rnor5.0 Rnor_5.0 1 89,922,295 - 89,922,433 UniSTS Rnor5.0 RGSC_v3.4 1 85,254,595 - 85,254,733 UniSTS RGSC3.4 Celera 1 79,936,856 - 79,936,994 UniSTS Cytogenetic Map 1 q21 UniSTS
AI044262
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 1 85,562,964 - 85,563,151 (+) MAPPER mRatBN7.2 mRatBN7.2 1 85,562,964 - 85,563,151 (-) MAPPER mRatBN7.2 Rnor_6.0 1 90,962,957 - 90,963,143 NCBI Rnor6.0 Rnor_6.0 1 88,766,231 - 88,766,417 NCBI Rnor6.0 Rnor_5.0 1 89,922,249 - 89,922,435 UniSTS Rnor5.0 Rnor_5.0 1 92,100,139 - 92,100,325 UniSTS Rnor5.0 RGSC_v3.4 1 85,254,549 - 85,254,735 UniSTS RGSC3.4 Celera 1 79,936,810 - 79,936,996 UniSTS RH 3.4 Map 1 882.29 UniSTS Cytogenetic Map 1 q21 UniSTS
UniSTS:235641
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 1 85,562,890 - 85,563,026 (+) MAPPER mRatBN7.2 mRatBN7.2 1 85,562,890 - 85,563,026 (-) MAPPER mRatBN7.2 Rnor_6.0 1 88,766,157 - 88,766,292 NCBI Rnor6.0 Rnor_6.0 1 90,963,082 - 90,963,217 NCBI Rnor6.0 Rnor_5.0 1 92,100,264 - 92,100,399 UniSTS Rnor5.0 Rnor_5.0 1 89,922,175 - 89,922,310 UniSTS Rnor5.0 RGSC_v3.4 1 85,254,475 - 85,254,610 UniSTS RGSC3.4 Celera 1 79,936,736 - 79,936,871 UniSTS Cytogenetic Map 1 q21 UniSTS
CLIPR-59__4586
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 1 85,562,383 - 85,563,184 (+) MAPPER mRatBN7.2 mRatBN7.2 1 85,562,383 - 85,563,184 (-) MAPPER mRatBN7.2 Rnor_6.0 1 88,765,650 - 88,766,450 NCBI Rnor6.0 Rnor_6.0 1 90,962,924 - 90,963,724 NCBI Rnor6.0 Rnor_5.0 1 92,100,106 - 92,100,906 UniSTS Rnor5.0 Rnor_5.0 1 89,921,668 - 89,922,468 UniSTS Rnor5.0 RGSC_v3.4 1 85,253,968 - 85,254,768 UniSTS RGSC3.4 Celera 1 79,936,229 - 79,937,029 UniSTS Cytogenetic Map 1 q21 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
6
19
84
155
99
104
67
38
67
299
144
139
69
79
37
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000051259 ⟹ ENSRNOP00000043754
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 1 85,563,592 - 85,568,973 (+) Ensembl Rnor_6.0 Ensembl 1 88,766,872 - 88,772,242 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000071180 ⟹ ENSRNOP00000064657
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 1 90,957,261 - 90,961,717 (-) Ensembl
Ensembl Acc Id:
ENSRNOT00000080613 ⟹ ENSRNOP00000072260
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 1 85,563,592 - 85,568,973 (+) Ensembl Rnor_6.0 Ensembl 1 90,957,133 - 90,962,466 (-) Ensembl
RefSeq Acc Id:
NM_001127450 ⟹ NP_001120922
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 1 94,691,062 - 94,696,429 (+) NCBI mRatBN7.2 1 85,563,606 - 85,568,973 (+) NCBI Rnor_6.0 1 88,766,872 - 88,772,243 (+) NCBI Rnor_5.0 1 92,094,314 - 92,099,684 (-) NCBI RGSC_v3.4 1 85,255,190 - 85,260,560 (+) RGD Celera 1 79,937,451 - 79,942,812 (+) RGD
Sequence:
CTGGGGGGGCGTGCGACCATGAGCATGTTGAGTCTGGAAATTGGAGAAGACGTTGTGGACGGACGGCACACAAGGAGTTGATATCCATGGAGGAGCAGGACGCCAGGATCCCAGCACTGGAACCATTC AGGGTGGAACAGGCGCCACCTCTAATCTACTATGTCCCTGACTTCATCTCCAAGGAAGAGGAGGAGTATTTGCTTCGACAGGTTTTCAATGCCCCAAAGCCAAAGTGGACCCAGCTGTCCGGGAGGAA GCTTCAGAACTGGGGTGGGCTCCCCCACCCCCGGGGGATGGTCCCTGAGCGACTCCCTCCATGGCTTCAACGCTACGTGGACAAAGTGTCTGACCTCAGCCTTTTTGGGGGTCTCCCAGCTAACCATG TCCTTGTGAACCAGTACCTGCCTGGGGAGGGCATCATGCCTCATGAAGATGGACCATTGTACTACCCAACAGTCAGCACCATTAGCCTGGGCTCCCATACTGTCCTTGACTTCTATGAACCTCGGCAG CCAGACGATGACGTCCCTCCAGAACAGCCCAGGCCTCCTCAGCAGCCCATCACCTCGCTGCTGGTGGAACCACGGAGCCTGCTGGTGCTCCGGGGCACGGCTTACACACGTCTGCTCCACGGCATCAC AGCCACCCGCGTAGATGAGCTGGACTCCACCTCGCTGCCGCCCAATGCCGCTGCCTGCCAGTCGGCGTTGCCCGGAGCCCGCCTGGTGCGTGGCACCCGTGTCTCGCTGACCATTCGACGTGTACCCC GCGTGCTGCGCGCCAGCCTCCTGCTGAGCAAGTGACCACCAGGCTCCAAAACTCCTGACCTTGGAACCTTAGGGCAGAGGTAGCTGCCCAGGGTTATTTATTTTCCCAGTAACTGTGGAAACCACGGA GAAGTCACCATTCCAAATAAACAGAAAATACCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
hide sequence
RefSeq Acc Id:
XM_039104487 ⟹ XP_038960415
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 1 94,690,979 - 94,696,429 (+) NCBI mRatBN7.2 1 85,563,511 - 85,568,977 (+) NCBI
RefSeq Acc Id:
XM_063283620 ⟹ XP_063139690
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 1 94,692,417 - 94,696,429 (+) NCBI
RefSeq Acc Id:
XR_005501802
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 1 94,690,984 - 94,696,175 (+) NCBI mRatBN7.2 1 85,563,512 - 85,568,977 (+) NCBI
RefSeq Acc Id:
NP_001120922 ⟸ NM_001127450
- UniProtKB:
G3V9E2 (UniProtKB/TrEMBL), A6J9W2 (UniProtKB/TrEMBL)
- Sequence:
MEEQDARIPALEPFRVEQAPPLIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSDLSLFGGLPANHVLVNQYLPGEGIMPHEDGPLYYPTVSTIS LGSHTVLDFYEPRQPDDDVPPEQPRPPQQPITSLLVEPRSLLVLRGTAYTRLLHGITATRVDELDSTSLPPNAAACQSALPGARLVRGTRVSLTIRRVPRVLRASLLLSK
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Ensembl Acc Id:
ENSRNOP00000072260 ⟸ ENSRNOT00000080613
Ensembl Acc Id:
ENSRNOP00000064657 ⟸ ENSRNOT00000071180
RefSeq Acc Id:
XP_038960415 ⟸ XM_039104487
- Peptide Label:
isoform X2
Ensembl Acc Id:
ENSRNOP00000043754 ⟸ ENSRNOT00000051259
RefSeq Acc Id:
XP_063139690 ⟸ XM_063283620
- Peptide Label:
isoform X1
RGD ID: 13689910
Promoter ID: EPDNEW_R435
Type: initiation region
Name: Alkbh6_1
Description: alkB homolog 6
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 1 88,766,896 - 88,766,956 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2021-03-09
Alkbh6
alkB homolog 6
LOC108348106
alpha-ketoglutarate-dependent dioxygenase alkB homolog 6
Data merged from RGD:11413490
737654
PROVISIONAL
2016-08-02
LOC108348106
alpha-ketoglutarate-dependent dioxygenase alkB homolog 6
Symbol and Name status set to provisional
70820
PROVISIONAL
2015-07-02
Alkbh6
alkB homolog 6
Alkbh6
alkB, alkylation repair homolog 6 (E. coli)
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-03-04
Alkbh6
alkB, alkylation repair homolog 6 (E. coli)
LOC292780
similar to hypothetical protein MGC15677
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2006-02-09
LOC292780
similar to hypothetical protein MGC15677
Symbol and Name status set to provisional
70820
PROVISIONAL