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Gene: Tcp11l1 (t-complex 11 like 1) Rattus norvegicus

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Symbol:

Tcp11l1

Name:

t-complex 11 like 1

RGD ID:

1562313

Description:

Predicted to be involved in signal transduction. Predicted to be located in microtubule. Orthologous to human TCP11L1 (t-complex 11 like 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC499846; RGD1562313; similar to RIKEN cDNA C130096D04 gene; t-complex 11, testis-specific-like 1; T-complex protein 11-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCP11L1 (t-complex 11 like 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tcp11l1 (t-complex 11 like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TCP11L1 (t-complex 11 like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tcp11l1 (t-complex 11, testis-specific-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16721	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	M05D6.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SOK1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tcp11l1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,478,787 - 111,547,553 (-)	NCBI		GRCr8
mRatBN7.2	3	91,047,006 - 91,092,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,998,270 - 91,092,006 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,550,387 - 94,585,662 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	103,149,454 - 103,184,730 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,979,523 - 101,014,809 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,621,433 - 94,657,467 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,624,071 - 94,657,377 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	101,247,426 - 101,282,177 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	90,010,390 - 90,046,373 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	90,115,833 - 90,150,770 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Rat	bladder exstrophy-epispadias-cloacal exstrophy complex		ISO	TCP11L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Exstrophy-epispadias complex	ClinVar	PMID:25741868
Tcp11l1	Rat	intellectual disability		ISO	TCP11L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Rat	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of TCP11L1 mRNA	CTD	PMID:22079256
Tcp11l1	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Tcp11l1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of TCP11L1 mRNA	CTD	PMID:36331819
Tcp11l1	Rat	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of TCP11L1 mRNA	CTD	PMID:29097150
Tcp11l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of TCP11L1 mRNA	CTD	PMID:22298810
Tcp11l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of TCP11L1 mRNA	CTD	PMID:33387578
Tcp11l1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Tcp11l1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of TCP11L1 mRNA	CTD	PMID:21570461
Tcp11l1	Rat	3-chloropropane-1,2-diol	increases expression	EXP		6480464	alpha-Chlorohydrin results in increased expression of TCP11L1 protein	CTD	PMID:34915118
Tcp11l1	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Tcp11l1 (Mus musculus)	6480464	bisphenol S results in decreased expression of TCP11L1 mRNA	CTD	PMID:39298647
Tcp11l1	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	TCP11L1 (Homo sapiens)	6480464	bisphenol S results in decreased methylation of TCP11L1 gene	CTD	PMID:31601247
Tcp11l1	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of TCP11L1 mRNA	CTD	PMID:31881176
Tcp11l1	Rat	aflatoxin B1	affects expression	ISO	TCP11L1 (Homo sapiens)	6480464	Aflatoxin B1 affects the expression of TCP11L1 protein	CTD	PMID:20106945
Tcp11l1	Rat	aflatoxin B1	increases methylation	ISO	TCP11L1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of TCP11L1 gene	CTD	PMID:27153756
Tcp11l1	Rat	aflatoxin B1	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of TCP11L1 mRNA	CTD	PMID:27153756
Tcp11l1	Rat	atrazine	decreases expression	EXP		6480464	Atrazine results in decreased expression of TCP11L1 mRNA	CTD	PMID:36841081
Tcp11l1	Rat	beauvericin	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[beauvericin co-treated with enniatins] results in decreased expression of TCP11L1 protein	CTD	PMID:32407736
Tcp11l1	Rat	benzo[a]pyrene	increases mutagenesis	ISO	TCP11L1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased mutagenesis of TCP11L1 gene	CTD	PMID:25435355
Tcp11l1	Rat	benzo[a]pyrene	decreases methylation	ISO	TCP11L1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of TCP11L1 5' UTR	CTD	PMID:27901495
Tcp11l1	Rat	benzo[a]pyrene	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of TCP11L1 mRNA	CTD	PMID:21632981 and PMID:26238291
Tcp11l1	Rat	benzo[a]pyrene diol epoxide I	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	7 more ...	CTD	PMID:26238291
Tcp11l1	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of TCP11L1 mRNA	CTD	PMID:25181051
Tcp11l1	Rat	bisphenol A	increases expression	ISO	Tcp11l1 (Mus musculus)	6480464	bisphenol A results in increased expression of TCP11L1 mRNA	CTD	PMID:35598803
Tcp11l1	Rat	bisphenol A	decreases expression	ISO	TCP11L1 (Homo sapiens)	6480464	bisphenol A results in decreased expression of TCP11L1 protein	CTD	PMID:33376534
Tcp11l1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of TCP11L1 mRNA	CTD	PMID:34947998
Tcp11l1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TCP11L1 mRNA	CTD	PMID:29097150
Tcp11l1	Rat	CGP 52608	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to TCP11L1 gene]	CTD	PMID:28238834
Tcp11l1	Rat	chlordecone	decreases expression	ISO	Tcp11l1 (Mus musculus)	6480464	Chlordecone results in decreased expression of TCP11L1 mRNA	CTD	PMID:29980752
Tcp11l1	Rat	choline	multiple interactions	ISO	Tcp11l1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of TCP11L1 mRNA	CTD	PMID:20938992
Tcp11l1	Rat	cobalt dichloride	decreases expression	ISO	TCP11L1 (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of TCP11L1 mRNA	CTD	PMID:19320972
Tcp11l1	Rat	coumarin	decreases phosphorylation	ISO	TCP11L1 (Homo sapiens)	6480464	coumarin results in decreased phosphorylation of TCP11L1 protein	CTD	PMID:35688186
Tcp11l1	Rat	crocidolite asbestos	increases expression	ISO	Tcp11l1 (Mus musculus)	6480464	Asbestos and Crocidolite results in increased expression of TCP11L1 mRNA	CTD	PMID:29279043
Tcp11l1	Rat	cyclosporin A	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Cyclosporine results in increased expression of TCP11L1 mRNA	CTD	PMID:25562108
Tcp11l1	Rat	dorsomorphin	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TCP11L1 mRNA	CTD	PMID:27188386
Tcp11l1	Rat	doxorubicin	decreases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of TCP11L1 mRNA	CTD	PMID:29803840
Tcp11l1	Rat	enniatin	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[beauvericin co-treated with enniatins] results in decreased expression of TCP11L1 protein	CTD	PMID:32407736
Tcp11l1	Rat	enzyme inhibitor	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of TCP11L1 protein	CTD	PMID:23301498
Tcp11l1	Rat	epoxiconazole	decreases expression	ISO	Tcp11l1 (Mus musculus)	6480464	epoxiconazole results in decreased expression of TCP11L1 mRNA	CTD	PMID:35436446
Tcp11l1	Rat	ethanol	increases expression	ISO	Tcp11l1 (Mus musculus)	6480464	Ethanol results in increased expression of TCP11L1 mRNA	CTD	PMID:30319688
Tcp11l1	Rat	ethyl methanesulfonate	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of TCP11L1 mRNA	CTD	PMID:23649840
Tcp11l1	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of TCP11L1 mRNA	CTD	PMID:30307764
Tcp11l1	Rat	folic acid	multiple interactions	ISO	Tcp11l1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of TCP11L1 mRNA	CTD	PMID:20938992
Tcp11l1	Rat	fragrance	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Perfume results in increased expression of TCP11L1 mRNA	CTD	PMID:24768652
Tcp11l1	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of TCP11L1 mRNA	CTD	PMID:25539665
Tcp11l1	Rat	glyphosate	increases expression	ISO	Tcp11l1 (Mus musculus)	6480464	Glyphosate results in increased expression of TCP11L1 mRNA	CTD	PMID:35897073
Tcp11l1	Rat	indole-3-methanol	multiple interactions	EXP		6480464	[indole-3-carbinol co-treated with Diethylnitrosamine] results in increased expression of TCP11L1 mRNA	CTD	PMID:22129741
Tcp11l1	Rat	L-methionine	multiple interactions	ISO	Tcp11l1 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of TCP11L1 mRNA	CTD	PMID:20938992
Tcp11l1	Rat	methyl methanesulfonate	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of TCP11L1 mRNA	CTD	PMID:23649840
Tcp11l1	Rat	methylmercury chloride	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	methylmercuric chloride results in increased expression of TCP11L1 mRNA	CTD	PMID:28001369
Tcp11l1	Rat	N-nitrosodiethylamine	multiple interactions	EXP		6480464	[indole-3-carbinol co-treated with Diethylnitrosamine] results in increased expression of TCP11L1 mRNA	CTD	PMID:22129741
Tcp11l1	Rat	paracetamol	affects expression	ISO	Tcp11l1 (Mus musculus)	6480464	Acetaminophen affects the expression of TCP11L1 mRNA	CTD	PMID:17562736
Tcp11l1	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of TCP11L1 mRNA	CTD	PMID:33387578
Tcp11l1	Rat	paracetamol	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Acetaminophen results in increased expression of TCP11L1 mRNA	CTD	PMID:22230336
Tcp11l1	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Tcp11l1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of TCP11L1 mRNA	CTD	PMID:36331819
Tcp11l1	Rat	potassium chromate	decreases expression	ISO	TCP11L1 (Homo sapiens)	6480464	potassium chromate(VI) results in decreased expression of TCP11L1 mRNA	CTD	PMID:22079256
Tcp11l1	Rat	potassium chromate	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of TCP11L1 mRNA	CTD	PMID:22079256
Tcp11l1	Rat	quercetin	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Quercetin results in increased expression of TCP11L1 mRNA	CTD	PMID:21632981
Tcp11l1	Rat	SB 431542	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TCP11L1 mRNA	CTD	PMID:27188386
Tcp11l1	Rat	silicon dioxide	decreases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Silicon Dioxide results in decreased expression of TCP11L1 mRNA	CTD	PMID:25351596
Tcp11l1	Rat	sodium arsenite	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of TCP11L1 mRNA	CTD	PMID:38568856
Tcp11l1	Rat	sodium arsenite	decreases expression	ISO	Tcp11l1 (Mus musculus)	6480464	sodium arsenite results in decreased expression of TCP11L1 mRNA	CTD	PMID:37682722
Tcp11l1	Rat	sulforaphane	decreases expression	ISO	TCP11L1 (Homo sapiens)	6480464	sulforaphane results in decreased expression of TCP11L1 mRNA	CTD	PMID:31838189
Tcp11l1	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of TCP11L1 mRNA	CTD	PMID:31150632
Tcp11l1	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of TCP11L1 mRNA	CTD	PMID:23411599
Tcp11l1	Rat	titanium dioxide	decreases expression	ISO	Tcp11l1 (Mus musculus)	6480464	titanium dioxide results in decreased expression of TCP11L1 mRNA	CTD	PMID:35295148
Tcp11l1	Rat	valproic acid	increases expression	ISO	TCP11L1 (Homo sapiens)	6480464	Valproic Acid results in increased expression of TCP11L1 mRNA	CTD	PMID:23179753 and PMID:26272509
Tcp11l1	Rat	valproic acid	multiple interactions	ISO	TCP11L1 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TCP11L1 mRNA	CTD	PMID:27188386
Tcp11l1	Rat	valproic acid	affects splicing	EXP		6480464	Valproic Acid affects the splicing of TCP11L1 mRNA	CTD	PMID:29427782

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Rat	signal transduction	involved_in	IBA	MGI:98544 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Rat	microtubule	located_in	ISO	TCP11L1 (Homo sapiens)	1624291	PMID:21525035	RGD	PMID:21525035
Tcp11l1	Rat	microtubule	located_in	IEA	UniProtKB:Q9NUJ3 and ensembl:ENSP00000335595	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Rat	protein binding	enables	ISO	TCP11L1 (Homo sapiens)	1624291	UniProtKB:O95947 more ...	RGD	PMID:32296183

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:21525035

Tcp11l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,478,787 - 111,547,553 (-)	NCBI		GRCr8
mRatBN7.2	3	91,047,006 - 91,092,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,998,270 - 91,092,006 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,550,387 - 94,585,662 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	103,149,454 - 103,184,730 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,979,523 - 101,014,809 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,621,433 - 94,657,467 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,624,071 - 94,657,377 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	101,247,426 - 101,282,177 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	90,010,390 - 90,046,373 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	90,115,833 - 90,150,770 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

TCP11L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,039,572 - 33,073,563 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,039,417 - 33,105,943 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,061,118 - 33,095,109 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	33,017,720 - 33,051,454 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	33,207,691 - 33,241,809 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	32,755,664 - 32,789,782 (+)	NCBI		HuRef
CHM1_1	11	33,060,432 - 33,094,574 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,175,146 - 33,209,116 (+)	NCBI		T2T-CHM13v2.0

Tcp11l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	104,497,587 - 104,542,525 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	104,487,633 - 104,542,514 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	104,667,242 - 104,712,169 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	104,657,288 - 104,712,169 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	104,520,137 - 104,552,319 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	104,480,819 - 104,513,001 (-)	NCBI		MGSCv36	mm8
Celera	2	105,918,606 - 105,947,980 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.87	NCBI

Tcp11l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	13,130,304 - 13,161,318 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	13,097,785 - 13,161,623 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCP11L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	35,262,724 - 35,302,885 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	35,265,855 - 35,300,976 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	33,015,724 - 33,050,236 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	32,901,531 - 32,934,916 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	32,901,584 - 32,948,458 (+)	Ensembl	panpan1.1		panPan2

TCP11L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	34,566,940 - 34,605,678 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	34,570,501 - 34,601,648 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	34,178,597 - 34,217,379 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	35,178,063 - 35,216,862 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	35,177,453 - 35,216,831 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,746,563 - 34,785,342 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	34,330,489 - 34,369,088 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,967,883 - 35,004,468 (-)	NCBI		UU_Cfam_GSD_1.0

Tcp11l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	31,716,056 - 31,757,145 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,840,054 - 4,881,364 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,839,661 - 4,881,990 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCP11L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,855,471 - 27,899,766 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,854,394 - 27,903,166 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	30,353,850 - 30,399,032 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCP11L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	32,145,355 - 32,177,745 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	32,146,244 - 32,177,155 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	129,301,279 - 129,339,249 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcp11l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	14,150,338 - 14,180,501 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	14,144,617 - 14,180,626 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Tcp11l1
376 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	501
Count of miRNA genes:	243
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000060311
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

BI293324

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	91,057,258 - 91,057,367 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	94,623,273 - 94,623,381	NCBI	Rnor6.0
Rnor_5.0	3	101,248,296 - 101,248,404	UniSTS	Rnor5.0
RGSC_v3.4	3	90,011,260 - 90,011,368	UniSTS	RGSC3.4
Celera	3	90,116,703 - 90,116,811	UniSTS
RH 3.4 Map	3	731.0	UniSTS
Cytogenetic Map	3	q32	UniSTS

BF391084

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	91,057,816 - 91,057,983 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	94,623,831 - 94,623,997	NCBI	Rnor6.0
Rnor_5.0	3	101,248,854 - 101,249,020	UniSTS	Rnor5.0
RGSC_v3.4	3	90,011,818 - 90,011,984	UniSTS	RGSC3.4
Celera	3	90,117,261 - 90,117,427	UniSTS
RH 3.4 Map	3	731.8	UniSTS
Cytogenetic Map	3	q32	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001109202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000060311 ⟹ ENSRNOP00000057060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,998,270 - 91,092,006 (-)	Ensembl
Rnor_6.0 Ensembl	3	94,624,269 - 94,653,682 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077484 ⟹ ENSRNOP00000073788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	91,056,389 - 91,091,587 (-)	Ensembl
Rnor_6.0 Ensembl	3	94,624,071 - 94,657,377 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116484 ⟹ ENSRNOP00000080061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	91,055,320 - 91,092,006 (-)	Ensembl

RefSeq Acc Id:

NM_001109202 ⟹ NP_001102672

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,511,256 - 111,546,454 (-)	NCBI
mRatBN7.2	3	91,056,389 - 91,091,587 (-)	NCBI
Rnor_6.0	3	94,622,403 - 94,657,467 (-)	NCBI
Rnor_5.0	3	101,247,426 - 101,282,177 (-)	NCBI
RGSC_v3.4	3	90,010,390 - 90,046,373 (-)	RGD
Celera	3	90,115,833 - 90,150,770 (-)	RGD

Sequence:

show sequence

GCACAGAGCGCGGGCGCTGCCCACCGCCGCGGGGCTGAGAGGACAGCCCGCAGCTCGGCGGGCGAGCCAGGCGGCCCGGGGGCTCGAGGCCCAGGCGCCCAGCACGGCGCGCGCGTCCCTCCCGCCCT
TTCGCGTTGCGGGCCCCAGGGGACTGGCAGCGGGAGTGAACCCGGGGATATCGCGAACGCCGCGGCAGTCAACAGACTTAACTGAGGATGTCTGAAAACCTTGACAAGTCCCATGTAAATGAAGCAGG
AGAGTCAAAGTCGGCTGCCTCGGAGGAGGGCCAGAAAGGTGCTCTGGAGTGCTCTGATGAAGCCTTACAGGAAAAAGTAAAGTCGGACTCGCCTAGTCCCCTGAGAGTGGGAAGACCTCACTCTAGTC
CTCCTCGGCTTGTCACTGTAGAGGAACTGCTAGAAACAGCAAAAGGAGTCACCAACATGGCTCTGGCCCATGAAATTGTGGTAAATGGAGACTTCCGGATTAATGCTGTTGAATTAGCTGAAGGCAGC
TTGGAGAAGAGAGTGAAGGAGATTGTACACAAAGCATTCTGGGATTGCTTGAGTGTCCAGCTAAGTGAAGACCCCCCGACCTATGACCATGCCATCAAACTTGTAGGAGAGATCAAAGAGACTTTGTT
ATCTTTCTTGCTGCCTGGTCACACAAGACTGAGAAACCAGATAACAGAAACCTTGGATCTGGAGCTGATAAAACAGGAAGCAGAGAATGGGGCCCTAGACATTTCCAAGCTGGCAGAATTCATTGTTG
GCATGATGGGGATATTGTGCGCACCTGCTCGAGATGAGGAAGTTAAAAAACTAAAGGACGTTAAGGAAATAGTGCCTCTTTTCAGGGCAATATTTTCTGTGTTGGACCTAATGAAAGTCGACATGGCC
AACTTCGCTATCAGTAGCATTAGGCCACACCTCATGCAGCAGTCAGTCGAATATGAGAGAAAGAAGTTTCAGGAAGTGTTGGAGAAGCAGCCAAACTCCCTGGACTTTGTCACCCAGTGGCTGGAGGA
GGCCTCAAACGACCTTTTGACTCAGAAGTGCAAACATGCCCTGCCAGCCGGGGGAGGCGCTGCTGGCTCTGGGGATGCTCCACTACTGACCGCTGCTTCTGTCCAGAACTATGCCTACCTGAAGCTTC
TGAAATGGGACCACTTCCGGAGACCTTTCCCTGAGACAGTTTTGATGGACCAACCTCGTTTCCAAGAGCTGCAGCTCCAGCTGGAGCAGCTGGCCCTCCTGGGAGCTGTGCTGCTCGTCACGTTCAGT
ACCTCTGCACCTGCAGTTTCTGGGCATGCCGGCTTTGCGGAGAAGCTCAAGACGGTGGTGAAGATTCTGCTAGCAGACGTGCATCTGCCTTCCTTCCAACTGGAGGACGCCCTGACTTCCATTGGGGA
GAAAGTGTGCCTGGAGGTGAGCAGCTGCCTCTCCATGTGTGGATCCTCTCCATTCTCTGTCAGTAAGGAGACTGTGCTCAAGGGCCAGATTCAGGCCCTCGCCAGTCCTGACGACCCCATTCGCAGGA
TCATGGAGTCCCGAATTTTGACCTTCTTGGAGACATACCTTGCCTCTGGTCATCAGAAGCTCTTGCCTACAGTGCCTGGGGGATTGGGTCCCATTCAGAAAGAGCTAGAAGAAGTTGCCGTGAAATTT
GTGCGCCTGGTCAACTATAACAAGATGGTGTTCTGTCCGTACTATGACGAAATTCTCAGTAAGCTCCTCCTCCGCTCCTGAGGTGCACAGCTGCCACAGCTTGTTCCTCATCTCCTCAGAACCCCGCT
CTTGCAATGCCGTGGAGAATGGCATGTGACACATTCCTGTGTAATAGCACTGGTTCCACAGGGACTGAAGAATGCACTGAATTCTGTTTTGAGGACTGTATTTATGAGTGCAGGTTTACAAACCTAAG
AAGCTTTTGTTCTCTTGAGACTATAGGGACACATAGCTTTCAGTAATTGGCTGTCTGTCTCTCTGCTCCCGCTTCATCAGGTTGGAGGAGCTGCTTCTCCCAAGGAACCTGAGACAGTTGTCTCTTTC
TCAGATACTCTGTGCTCATAATCATAAGCCAAGCCTTGTCCTCCTGCCCCGTGTACAACCTCCCTCCCACTACTCTTCCCTGTGGGTACTTTATGACAGGGCTGCCTGTAGCCATACAGGGTCCTAGC
CCTCTCCTTCCCACTCTGTCCATTTATTGCTTCTTGGGTCTGACCTAACAGTGTTCCAGAGCCCTTTTGTTCTACAGCAGAGTTACTTAATAATTTATTTTATATTATTATTAAAACAGCACCTCTAT
ACTCCCCTGGCTGGTGTAAAACGTGCTGTCCCCAGACTTTCATCAGTCCTCCTGCCTCTGCCTCACAAATGCTAGGGTTACAGGCCTCTGCCGCCATACCCAATGGATAGAACTTAATTTTTCAAAGC
TTGCTTTGCTGGCTGGGATGTACTGTGGCCAGTGTTTGCCTAGCCTGCACAGGCCCTGGAGTTGACCTCTCCTAGTATTGAGAAGCCATAAGCCCCTGTAGCTTCAGTTACTTTTAAAAGGTAGACGA
CTTATCTGTGCCCAGGAGCTCAGGAGCAGCCTCAGTAACAGAGACTCCCAACTTAAGAGAATAAGAACAGCCAGGTGATAGGGCTCACCTTCAGTCCCGATACTTAGAAGGCAGAGGGAGGTGGATCT
CTTGAGTTCAGGACCAGCTTCATCTATAGAATGAGTTCCAGGACTGCTATCGATACACAGAGAGACCCTGTCTCACAAACCAAAACAGAAATACTGTTCCTTCTACAGAAGTAGTCCTGATTCTTGAT
GGTGGCAATTAAAGCCAGGCATGGTGACATATGCTGTAGATGGTCTTTGCCACTCTGTGGGTTCTGTTTCCCACCCTTTATCCTCCCCTCCACTTCTCCTTCTAACACTAGATAGGAGAGAAAGGAGG
GGGTGTCCCTGAATTTAATTTCTTGCTTTTGTTTCTTTTTTGACTATGGCTACTAACAGACCACAACCACCCTCCATTCTTCTTTAATGACCAGCAACCACCCAACTTACCTCTGAAAAGTTCCCAGA
ATTCCAAACTTCACGCAGTTGTAGAAACTAACTTTTTTATATATAAGATTTACTTATTTTATGTATACATTGCTGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCTCATTACAGATGGCTGGC
TGTTAGCCACCATGTGGTTGCTGGAAATTAAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACCTCAGAGCCATCTCTCCAGCCCAGAAACTAACTTTCATGAGGTAACTTTCCAATTCCTAG
AAAAACAGGGTATAGACATTTTGAAGTGGCCATTCTGAGTGCCAAGATCTTTGTGAAATGATAGTCACAGCAGCTCCTGTATCCACCATACCTTCTATTTCAGTATCATTCACTTGTAATTTTAATTT
TGGCCTCTGATCATGAACAACTATATGCTAGAACGTGTATCTTCCAGGGCTTCCACACCCTCCTGTTCATCCTCCTGGAATGGCTTTGCCTTTGATGCAGGGAAACCAACAGTTGTGCAGTCCTGTCA
CCTGTGTTAAATTGCATCTCTTTTTAC

hide sequence

RefSeq Acc Id:

XM_017591977 ⟹ XP_017447466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,501,876 - 111,547,515 (-)	NCBI
mRatBN7.2	3	91,057,146 - 91,091,530 (-)	NCBI
Rnor_6.0	3	94,621,433 - 94,657,360 (-)	NCBI

Sequence:

show sequence

CGCGCGCGTCCCTCCCGCCCTTTCGCGTTGCGGGCCCCAGGGGACTGGCAGCGGGAGTGAACCC
GGGGATATCGCGAACGCCGCGGCAGGAAAGTCAACAGACTTAACTGAGGATGTCTGAAAACCTTGACAAGTCCCATGTAAATGAAGCAGGAGAGTCAAAGTCGGCTGCCTCGGAGGAGGGCCAGAAAG
GTGCTCTGGAGTGCTCTGATGAAGCCTTACAGGAAAAAGTAAAGTCGGACTCGCCTAGTCCCCTGAGAGTGGGAAGACCTCACTCTAGTCCTCCTCGGCTTGTCACTGTAGAGGAACTGCTAGAAACA
GCAAAAGGAGTCACCAACATGGCTCTGGCCCATGAAATTGTGGTAAATGGAGACTTCCGGATTAATGCTGTTGAATTAGCTGAAGGCAGCTTGGAGAAGAGAGTGAAGGAGATTGTACACAAAGCATT
CTGGGATTGCTTGAGTGTCCAGCTAAGTGAAGACCCCCCGACCTATGACCATGCCATCAAACTTGTAGGAGAGATCAAAGAGACTTTGTTATCTTTCTTGCTGCCTGGTCACACAAGACTGAGAAACC
AGATAACAGAAACCTTGGATCTGGAGCTGATAAAACAGGAAGCAGAGAATGGGGCCCTAGACATTTCCAAGCTGGCAGAATTCATTGTTGGCATGATGGGGATATTGTGCGCACCTGCTCGAGATGAG
GAAGTTAAAAAACTAAAGGACGTTAAGGAAATAGTGCCTCTTTTCAGGGCAATATTTTCATGTGTTGGACCTGAATTGAAAGTCGACATGGCAACTTCGCTATCAGCTAGGCATGTAGGCCACACCTC
AGCCAGCAGTCAGTCGAATATGAGAGAAAGAAGTTTCAGGAAGTGTTGGAGAAGCAGGCCAAACTCCCTGGACTTTGTCACCCAGTGGCTGGAGGAGGCCTCAAACGACCTTTTGACTCAGAAGTGCA
AACATGCCCTGCCAGCCGGGGGAGGCGCTGCTGGCTCTGGGGATGCTCCACTACTGACCGCTGCTTCTGTCCAGAACTATGCCTACCTGAAGCTTCTGAAATGGGACCACTTCCGGAGACCTTTCCCT
GAGACAGTTTTGATGGACCAACCTCGTTTCCAAGAGCTGCAGCTCCAGCTGGAGCAGCTGGCCCTCCTGGGAGCTGTGCTGCTCGTCACGTTCAGTACCTCTGCACCTGCAGTTTCTGGGCATGCCGG
CTTTGCGGAGAAGCTCAAGACGGTGGTGAAGATTCTGCTAGCAGACGTGCATCTGCCTTCCTTCCAACTGGAGGACGCCCTGACTTCCATTGGGGAGAAAGTGTGCCTGGAGGTGAGCAGCTGCCTCT
CCATGTGTGGATCCTCTCCATTCTCTGTCAGTAAGGAGACTGTGCTCAAGGGCCAGATTCAGGCCCTCGCCAGTCCTGACGACCCCATTCGCAGGATCATGGAGTCCCGAATTTTGACCTTCTTGGAG
ACATACCTTGCCTCTGGTCATCAGAAGCTCTTGCCTACAGTGCCTGGGGGATTGGGTCCCATTCAGAAAGAGCTAGAAGAAGTTGCCGTGAAATTTGTGCGCCTGGTCAACTATAACAAGATGGTGTT
CTGTCCGTACTATGACGAAATTCTCAGTAAGCTCCTCCTCCGCTCCTGAGGTGCACAGCTGCCACAGCTTGTTCCTCATCTCCTCAGAACCCCGCTCTTGCAATGCCGTGGAGAATGGCATGTGACAC
ATTCCTGTGTAATAGCACTGGTTCCACAGGGACTGAAGAATGCACTGAATTCTGTTTTGAGGACTGTATTTATGAGTGCAGGTTTACAAACCTAAGAAGCTTTTGTTCTCTTGAGACTATAGGGACAC
ATAGCTTTCAGTAATTGGCTGTCTGTCTCTCTGCTCCCGCTTCATCAGGTTGGAGGAGCTGCTTCTCCCAAGGAACCTGAGACAGTTGTCTCTTTCTCAGATACTCTGTGCTCATAATCATAAGCCAA
GCCTTGTCCTCCTGCCCCGTGTACAACCTCCCTCCCACTACTCTTCCCTGTGGGTACTTTATGACAGGGCTGCCTGTAGCCATACAGGGTCCTAGCCCTCTCCTTCCCACTCTGTCCATTTATTGCTT
CTTGGGTCTGACCTAACAGTGTTCCAGAGCCCTTTTGTTCTACAGCAGAGTTACTTAATAATTTATTTTATATTATTATTAAAACAGCACCTCTATACTCCCCTGGCTGGTGTAAAACGTGCTGTCCC
CAGACTTTCATCAGTCCTCCTGCCTCTGCCTCACAAATGCTAGGGTTACAGGCCTCTGCCGCCATACCCAATGGATAGAACTTAATTTTTCAAAGCTTGCTTTGCTGGCTGGGATGTACTGTGGCCAG
TGTTTGCCTAGCCTGCACAGGCCCTGGAGTTGACCTCTCCTAGTATTGAGAAGCCATAAGCCCCTGTAGCTTCAGTTACTTTTAAAAGGTAGACGACTTATCTGTGCCCAGGAGCTCAGGAGCAGCCT
CAGTAACAGAGACTCCCAACTTAAGAGAATAAGAACAGCCAGGTGATAGGGCTCACCTTCAGTCCCGATACTTAGAAGGCAGAGGGAGGTGGATCTCTTGAGTTCAGGACCAGCTTCATCTATAGAAT
GAGTTCCAGGACTGCTATCGATACACAGAGAGACCCTGTCTCACAAACCAAAACAGAAATACTGTTCCTTCTACAGAAGTAGTCCTGATTCTTGATGGTGGCAATTAAAGCCAGGCATGGTGACATAT
GCTGTAGATGGTCTTTGCCACTCTGTGGGTTCTGTTTCCCACCCTTTATCCTCCCCTCCACTTCTCCTTCTAACACTAGATAGGAGAGAAAGGAGGGGGTGTCCCTGAATTTAATTTCTTGCTTTTGT
TTCTTTTTTGACTATGGCTACTAACAGACCACAACCACCCTCCATTCTTCTTTAATGACCAGCAACCACCCAACTTACCTCTGAAAAGTTCCCAGAATTCCAAACTTCACGCAGTTGTAGAAACTAAC
TTTTTTATATATAAGATTTACTTATTTTATGTATACATTGCTGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCTCATTACAGATGGCTGGCTGTTAGCCACCATGTGGTTGCTGGAAATTAAA
CTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACCTCAGAGCCATCTCTCCAGCCCAGAAACTAACTTTCATGAGGTAACTTTCCAATTCCTAGAAAAACAGGGTATAGACATTTTGAAGTGGCCA
TTCTGAGTGCCAAGATCTTTGTGAAATGATAGTCACAGCAGCTCCTGTATCCACCATACCTTCTATTTCAGTATCATTCACTTGTAATTTTAATTTTGGCCTCTGATCATGAACAACTATATGCTAGA
ACGTGTATCTTCCAGGGCTTCCACACCCTCCTGTTCATCCTCCTGGAATGGCTTTGCCTTTGATGCAGGGAAACCAACAGTTGTGCAGTCCTGTCACCTGTGTTAAATTGCATCTCTTTTTACATCGG
CCATAATTTCAACTTCTTTGAAATCTTCATCTATAATTCCTGGGTGCACAATGAGTCCTTGGGAGGTCAAACCACTCCTTCCCAAGGTCATCCCTACTGTCCTCGAAGGCAAAGGGCCATGCTCTCCA
GTAGTTTGGGAGAAGAGGTTTGCCTGTGAACTGTTGTAGGGCAGCACTGCCTACGGCACTGCTCGTCAAGTATCTAGTGCCAGACGGAGGGACTTTGGTCTGTGTGCTGCTCCTTCAGTGGTGGCTCA
TGATTCTTGCTGCAGAGCCCTGAGCCGGACACCTAAGGCCGTTTCCAGCTGTAAGAAATTACCTTCAATCTCTCTTTTGGGTCAGCATTTCTGAACTCAGTGGCAGCCTTTGCCACTTTGCTTATAGA
CCCTGGAAAGCATAGGCCTTCTTTCTGCTTGAGATTTAAGAAAACCCATGCCCCTAGAAATTGTTCATTCACTTTTCCAGAGCAAAGTACTGTCTTTCTCAAAGTTAATGCACTGGCCATTTTGAGTT
CTGGGGCTTTTGGTTTAGACACAGTCTTTATAAATGACCATATTCCACAATTGAAGCACAGGGCTTTTGCTATTGGAGACCTCTAGTATAGCTTGATCTATCAACATGGTACGCATTCGAACCAATAT
GGGTCATATCCCTTACCTGTTAAAACATAGGCACTGCCCATGCCTTTACTGGTCTAAGGTAGCTTTTATTTATTTTTGCTACTTTGTGTGGGATCTTCATGGATTCTTCTTTCTCCTTACAGTATCTC
CTCTAGCTAGAATCAGCTTCTCCAGCTTAATCTCCTCTCTAACCCTACTGAGTCTTTTGTCTTCTGCATCATCTGTCTTCTCTGACCCCTACTCTCTCACCCTACCCCCTCTTCTTTCTCTCCAGTTC
TATTACCATTTCCTGGACTCCTTCCCAGGCTTTTATATCTTCTTCTGTTCCCAGAAGTACAAGAGGAAA

hide sequence

RefSeq Acc Id:

XM_039105674 ⟹ XP_038961602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,501,876 - 111,547,553 (-)	NCBI
mRatBN7.2	3	91,057,146 - 91,092,687 (-)	NCBI

RefSeq Acc Id:

XM_063284359 ⟹ XP_063140429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,478,787 - 111,547,515 (-)	NCBI


Protein RefSeqs	NP_001102672	(Get FASTA)	NCBI Sequence Viewer
	XP_017447466	(Get FASTA)	NCBI Sequence Viewer
	XP_038961602	(Get FASTA)	NCBI Sequence Viewer
	XP_063140429	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79698	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057060.5
	ENSRNOP00000073788
	ENSRNOP00000073788.2
	ENSRNOP00000080061.1
	ENSRNOP00000101296

RefSeq Acc Id:

NP_001102672 ⟸ NM_001109202

- UniProtKB:

A0A0G2K6F1 (UniProtKB/TrEMBL), A6HNU7 (UniProtKB/TrEMBL), F1M9Y7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSENLDKSHVNEAGESKSAASEEGQKGALECSDEALQEKVKSDSPSPLRVGRPHSSPPRLVTVEELLETAKGVTNMALAHEIVVNGDFRINAVELAEGSLEKRVKEIVHKAFWDCLSVQLSEDPPTYD
HAIKLVGEIKETLLSFLLPGHTRLRNQITETLDLELIKQEAENGALDISKLAEFIVGMMGILCAPARDEEVKKLKDVKEIVPLFRAIFSVLDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEVLEK
QPNSLDFVTQWLEEASNDLLTQKCKHALPAGGGAAGSGDAPLLTAASVQNYAYLKLLKWDHFRRPFPETVLMDQPRFQELQLQLEQLALLGAVLLVTFSTSAPAVSGHAGFAEKLKTVVKILLADVHL
PSFQLEDALTSIGEKVCLEVSSCLSMCGSSPFSVSKETVLKGQIQALASPDDPIRRIMESRILTFLETYLASGHQKLLPTVPGGLGPIQKELEEVAVKFVRLVNYNKMVFCPYYDEILSKLLLRS

hide sequence

RefSeq Acc Id:	XP_017447466 ⟸ XM_017591977
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K6F1 (UniProtKB/TrEMBL), A6HNU7 (UniProtKB/TrEMBL), F1M9Y7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSENLDKSHVNEAGESKSAASEEGQKGALECSDEALQEKVKSDSPSPLRVGRPHSSPPRLVTVEELLETAKGVTNMALAHEIVVNGDFRINAVELAEGSLEKRVKEIVHKAFWDCLSVQLSEDPPTYD HAIKLVGEIKETLLSFLLPGHTRLRNQITETLDLELIKQEAENGALDISKLAEFIVGMMGILCAPARDEEVKKLKDVKEIVPLFRAIFSCVGPELKVDMATSLSARHVGHTSASSQSNMRERSFRKCW RSRPNSLDFVTQWLEEASNDLLTQKCKHALPAGGGAAGSGDAPLLTAASVQNYAYLKLLKWDHFRRPFPETVLMDQPRFQELQLQLEQLALLGAVLLVTFSTSAPAVSGHAGFAEKLKTVVKILLADV HLPSFQLEDALTSIGEKVCLEVSSCLSMCGSSPFSVSKETVLKGQIQALASPDDPIRRIMESRILTFLETYLASGHQKLLPTVPGGLGPIQKELEEVAVKFVRLVNYNKMVFCPYYDEILSKLLLRS hide sequence

Ensembl Acc Id:

ENSRNOP00000073788 ⟸ ENSRNOT00000077484

Ensembl Acc Id:

ENSRNOP00000057060 ⟸ ENSRNOT00000060311

RefSeq Acc Id:	XP_038961602 ⟸ XM_039105674
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K6F1 (UniProtKB/TrEMBL), A6HNU7 (UniProtKB/TrEMBL), F1M9Y7 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K6F1-F1-model_v2	AlphaFold	A0A0G2K6F1	1-511	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13692262

Promoter ID:

EPDNEW_R2787

Type:

initiation region

Name:

Tcp11l1_1

Description:

t-complex 11 like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	94,657,465 - 94,657,525	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-48532	BioCyc
Ensembl Genes	ENSRNOG00000042576	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000060311.5	UniProtKB/TrEMBL
	ENSRNOT00000077484	ENTREZGENE
	ENSRNOT00000077484.2	UniProtKB/TrEMBL
	ENSRNOT00000116484.1	UniProtKB/TrEMBL
	ENSRNOT00000158084	ENTREZGENE
InterPro	Tcp11	UniProtKB/TrEMBL
KEGG Report	rno:499846	UniProtKB/TrEMBL
NCBI Gene	499846	ENTREZGENE
PANTHER	PTHR12832	UniProtKB/TrEMBL
	T-COMPLEX PROTEIN 11-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	Tcp11	UniProtKB/TrEMBL
PhenoGen	Tcp11l1	PhenoGen
RatGTEx	ENSRNOG00000042576	RatGTEx
UniProt	A0A0G2K6F1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPS2_RAT	UniProtKB/TrEMBL
	A6HNU7	ENTREZGENE, UniProtKB/TrEMBL
	F1M9Y7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	Tcp11l1	t-complex 11 like 1	Tcp11l1	t-complex 11, testis-specific-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-03-01	Tcp11l1	t-complex 11, testis-specific-like 1	Tcp11l1	t-complex 11 like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Tcp11l1	t-complex 11 like 1	RGD1562313_predicted	similar to RIKEN cDNA C130096D04 gene (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562313_predicted	similar to RIKEN cDNA C130096D04 gene (predicted)	LOC499846	similar to RIKEN cDNA C130096D04 gene	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499846	similar to RIKEN cDNA C130096D04 gene			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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