Tcp11l1 (t-complex 11 like 1) - Rat Genome Database

Name: Tcp11l1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tcp11l1 (t-complex 11 like 1) Chinchilla lanigera

Analyze

Symbol:

Tcp11l1

Name:

t-complex 11 like 1

RGD ID:

8790201

Description:

ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN microtubule (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

t-complex 11, testis-specific-like 1; T-complex protein 11-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCP11L1 (t-complex 11 like 1)	NCBI	Ortholog
Mus musculus (house mouse):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	13,130,304 - 13,161,318 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	13,097,785 - 13,161,623 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bladder exstrophy-epispadias-cloacal exstrophy complex (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

microtubule (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tcp11l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	13,130,304 - 13,161,318 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	13,097,785 - 13,161,623 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCP11L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,039,572 - 33,073,563 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,039,417 - 33,105,943 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,061,118 - 33,095,109 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	33,017,720 - 33,051,454 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	33,207,691 - 33,241,809 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	32,755,664 - 32,789,782 (+)	NCBI		HuRef
CHM1_1	11	33,060,432 - 33,094,574 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,175,146 - 33,209,116 (+)	NCBI		T2T-CHM13v2.0

Tcp11l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	104,497,587 - 104,542,525 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	104,487,633 - 104,542,514 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	104,667,242 - 104,712,169 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	104,657,288 - 104,712,169 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	104,520,137 - 104,552,319 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	104,480,819 - 104,513,001 (-)	NCBI		MGSCv36	mm8
Celera	2	105,918,606 - 105,947,980 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.87	NCBI

Tcp11l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,478,787 - 111,547,553 (-)	NCBI		GRCr8
mRatBN7.2	3	91,047,006 - 91,092,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,998,270 - 91,092,006 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,550,387 - 94,585,662 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	103,149,454 - 103,184,730 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,979,523 - 101,014,809 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,621,433 - 94,657,467 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,624,071 - 94,657,377 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	101,247,426 - 101,282,177 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	90,010,390 - 90,046,373 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	90,115,833 - 90,150,770 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

TCP11L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	35,262,724 - 35,302,885 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	35,265,855 - 35,300,976 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	33,015,724 - 33,050,236 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	32,901,531 - 32,934,916 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	32,901,584 - 32,948,458 (+)	Ensembl	panpan1.1		panPan2

TCP11L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	34,566,940 - 34,605,678 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	34,570,501 - 34,601,648 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	34,178,597 - 34,217,379 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	35,178,063 - 35,216,862 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	35,177,453 - 35,216,831 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,746,563 - 34,785,342 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	34,330,489 - 34,369,088 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,967,883 - 35,004,468 (-)	NCBI		UU_Cfam_GSD_1.0

Tcp11l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	31,716,056 - 31,757,145 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,840,054 - 4,881,364 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,839,661 - 4,881,990 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCP11L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,855,471 - 27,899,766 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,854,394 - 27,903,166 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	30,353,850 - 30,399,032 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCP11L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	32,145,355 - 32,177,745 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	32,146,244 - 32,177,155 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	129,301,279 - 129,339,249 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcp11l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	14,150,338 - 14,180,501 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	14,144,617 - 14,180,626 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013513980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013513981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013513982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013513983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013513984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001233912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001233913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01022810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01022811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01017222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000020884 ⟹ ENSCLAP00000020686

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955422	13,130,304 - 13,161,318 (-)	Ensembl

RefSeq Acc Id:

XM_013513980 ⟹ XP_013369434

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,130,304 - 13,157,750 (-)	NCBI

Sequence:

show sequence

ATGTCTGAAAACATTGACAAGTCCAATATAAATCAGTCAAATGATTCTGAGCAGGGCCTGGATG
GTGCCGTGGAACATTCTGATGAAGCTTTACAGAAGAATGTAACATTGGACTCTTCTAGTCCCCA
CAGGGTGCAAAGACCTCACTCTAGTCCCCCTCGGTTCGTGACAGTCGAAGAACTTGTGGAGACA
GCAAAAGGCGTCACCAACATGGCTCTAGCCCATGAGATCGTGGTAAATGGAGACTTCCGGATTC
ACCCTGTGGACTTACCAGAGGACAGCTTGGAGAAGAGAGTAAAGGAGATCGTACATAAAGCTTT
TTGGGATTGCCTGAGTGTCCAACTAAGTGAAAACCCCCCGACGTACGACCATGCCATCAAACTT
GTGGGAGAGATCAAAGAGACACTTTTATCTTTCCTGCTGCCTGGTCACACTCGACTGAGAAACC
AGATAACAGAAGTCTTGGACCTGGATCTGATAAGGCAGGAAGCAGAGAACGGAGCCCTGGACAT
TGCTAAGCTGGCAGAATTCATCATTGGCATGATGGGGACACTGTGTGCGCCCGCTCGAGACGAG
GAAGTGAAGAAGCTGAAGGACATTAAGGAGATCGTGCCCCTTTTCAGGGCAATGTTTGCTGTGC
TGGACCTCATGAAAGTGGACATGGCCAACTTCGCCATCAGCAGCGTCAGACCCCACCTCATGCA
GCAGTCGGTTGAGTACGAGAGGGAGAAGTTTCAAGAACTGCTGGCGAGGCAGCCCAATTCCCTG
GACTTTGTCACCCAGTGGCTAGAAGAAGCCTCTGCTGACCTCATGGCTCAGCGGTACAAACACG
CCCTGTCAGCCCAGCGGGAGGCTGCTGGCTCCGAGGACGCCCTGGTGCTGAGCCCGGTGTCCGT
CCAGAACTACGCCTACCTGAAGCTGCTGAAGTGGGACCACCTCCACAGACCTTTCCCTGAGACA
GTGCTGATGGACCAGGCGCGTTTCCAAGAGCTGCAACATGAGCTGGAGCAGCTGACGGTCCTGG
GGGCCGTGCTGCTGGTCACGTTCAGCACGGCGGGCGCCGGCGTCTCCAGCCGGGCGGACTTCGC
GGAGAGACTCAAGATGATCGTGAAGGTGCTGCTGACTGACATGCACCTGCCCTCCTTCCGCCTG
GACGAGGCCCTGACCACCGTCGGGGAGAAAGTGTGCCAGGAGCTGAGCAGCTGCCTCGCGCTGT
GTGGATCCCCCGCCTTATCCAGCGACAGGGAGACCGTGCTCAAGGGCCGGATCCAGGCCGTGGG
CAGCCGCGACGACCCTGTCCGCAGGATCATGGAGTCCCGAATCCTGACCTTCTTGGAGACCTAC
CTGGCCTCGGGTCACCAGAAGCCATTGCCCGCAGTGCCCGGGGGCTTGGGGCCAGTTCACAAGG
AGCTGGAGGAAGTTGCCGTGAAATTCGTCCGCCTGGTCAACTATAACAAGATGGTCTTCTGCCC
CTACTACGACGCGATCCTCAGCAAACTCCTCCTCCGGTCCTAGCACGCAGGCGCCCCGCCGCGG
TGTTGGTCCTGGCGGCGCACACCTGGGCTCAGCTCTGCGTCGCTCCGGGAAGCGGCTAAGGAGT
ACAGTTCTGTCAACAGCATTCATTCCAAGGGCAAGGATATTGTGTATCGCTGGTGAAAAGACTT
GTTGAAGAAGGTACTGAATTCTATTTTGAGAGGTTGTATTTATGAGTGCAAGTTTACAAATCAA
AGGAGCTTTTGGTTGAGTGTGATAGGTGACACTCAGCTTTTTAGCGGGTAACCGCTGTGTCGCC
ACTGTTACCCCATAGAGAGGGCAGTGGCCGCGTCCTCCCAAGGAGGCTGGGACCCGGCCCTGCG
GCTGGGTGGTCTCCTGTCCGGCGGACCGTGCTGACCCCAGAGTCCAAGAGGCCAAGCCAGGACT
TCACCTCCTGCCCCTCCCGCACAGAGCCGCAGTCCCCTTCCCCCCCGGGTATTTTGTGACAGAA
GGGCAGTGTTTATAATCTCACACACACCTACTGCTTCCGCCACGCCTGGCCCAGCCAGGGCCCC
GGAGCCCTTTTGTTTTAGAGCAGAGTTGATTTTGAAAAGCTTGTTCTGTTGCATTGAGGAGATA
GTGCCCTGTTAAAGTGGTTGGCCAGTGTGGGCAAGGCCCTGGGTTCAATCCTTGGCACTTCAAA
AAAAAGAGGGGAGAGAAAGAGATACACAAGCTGGGCACGGTGCACGCCTGTAGTGCTGTAGCCC
CAGCTACTTGGGAGGCTGAGGCAAGAACGTGCTTTGAGCCCACGACTTCAGAGCCAGCCTGGGC
AACATAGAGACTGTCTCAAATGAAGCGTATTCTTTTTTACAGGATTCCTGTACCTGAACTGGGT
GATAGCAGTTCAGTCCTAGGAGAGCTAAAGAAAGGAATTTCTTTTACTTGTTAGCCTGGCAAGT
GAGGGGGGAAATTTTGAAGATGTGTTTTTATGTGTATACATACATATACGTATATGGACATACA
ATTTAATGTAATAAATGTCTGAAGTTTCTTTATTGAAAAATTCACTGTGATATAATATACAGAT
GCATTGACTGAATTTGAATTCTGGACCTAGATCGAAATATTTTTAGGTAAAATAGCCCAGTCTC
ACTAATCTAGATGGGAAGTCTTAAAATAACCCCTGGTGTTTGGATAGTAATTTCCAAGAACTTC
AGTGACCAGTATTCCTGACATGTTCTGTGACTGTAATTTGAATCTTACAGGTGATCTGCTAAAA
AAATAAATGAAATGTGTACA

hide sequence

RefSeq Acc Id:

XM_013513981 ⟹ XP_013369435

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,131,561 - 13,161,623 (-)	NCBI

Sequence:

show sequence

ACGAAAACATGGCGCTGCCCTAGGTTGGTCAGGCGCTTCTCTGATAGTATCAGTCGGCCCTTCC
CGACGCTGAGGAGCAGTCGCGGTGGCCGCTGCTCCTCGGAGCTGGGCAGCGAGGACAGCCCGCA
GCGGGGCGAGCGGGGAGGCGCCCGAAGGGCAGAAGAAGAACTGATCTCCCCGCCGCGCATCGCT
CCCCCCTGACTCGCGGCGGGGGCGGCAGGAGGGAGGCCCCCGACCCCGCGGCAGGAAAGTGAAT
ACACTTAATTGAGAATGTCTGAAAACATTGACAAGTCCAATATAAATCAGTCAAATGATTCTGA
GCAGGGCCTGGATGGTGCCGTGGAACATTCTGATGAAGCTTTACAGAAGAATGTAACATTGGAC
TCTTCTAGTCCCCACAGGGTGCAAAGACCTCACTCTAGTCCCCCTCGGTTCGTGACAGTCGAAG
AACTTGTGGAGACAGCAAAAGGCGTCACCAACATGGCTCTAGCCCATGAGATCGTGGTAAATGG
AGACTTCCGGATTCACCCTGTGGACTTACCAGAGGACAGCTTGGAGAAGAGAGTAAAGGAGATC
GTACATAAAGCTTTTTGGGATTGCCTGAGTGTCCAACTAAGTGAAAACCCCCCGACGTACGACC
ATGCCATCAAACTTGTGGGAGAGATCAAAGAGACACTTTTATCTTTCCTGCTGCCTGGTCACAC
TCGACTGAGAAACCAGATAACAGAAGTCTTGGACCTGGATCTGATAAGGCAGGAAGCAGAGAAC
GGAGCCCTGGACATTGCTAAGCTGGCAGAATTCATCATTGGCATGATGGGGACACTGTGTGCGC
CCGCTCGAGACGAGGAAGTGAAGAAGCTGAAGGACATTAAGGAGATCGTGCCCCTTTTCAGGGC
AATGTTTGCTGTGCTGGACCTCATGAAAGTGGACATGGCCAACTTCGCCATCAGCAGCGTCAGA
CCCCACCTCATGCAGCAGTCGGTTGAGTACGAGAGGGAGAAGTTTCAAGAACTGCTGGCGAGGC
AGCCCAATTCCCTGGACTTTGTCACCCAGTGGCTAGAAGAAGCCTCTGCTGACCTCATGGCTCA
GCGGTACAAACACGCCCTGTCAGCCCAGCGGGAGGCTGCTGGCTCCGAGGACGCCCTGGTGCTG
AGCCCGGTGTCCGTCCAGAACTACGCCTACCTGAAGCTGCTGAAGTGGGACCACCTCCACAGAC
CTTTCCCTGAGACAGTGCTGATGGACCAGGCGCGTTTCCAAGAGCTGCAACATGAGCTGGAGCA
GCTGACGGTCCTGGGGGCCGTGCTGCTGGTCACGTTCAGCACGGCGGGCGCCGGCGTCTCCAGC
CGGGCGGACTTCGCGGAGAGACTCAAGATGATCGTGAAGGTGCTGCTGACTGACATGCACCTGC
CCTCCTTCCGCCTGGACGAGGCCCTGACCACCGTCGGGGAGAAAGTGTGCCAGGAGCTGAGCAG
CTGCCTCGCGCTGTGTGGATCCCCCGCCTTATCCAGCGACAGGGAGACCGTGCTCAAGGGCCGG
ATCCAGGCCGTGGGCAGCCGCGACGACCCTGTCCGCAGGATCATGGAGTCCCGAATCCTGACCT
TCTTGGAGACCTACCTGGCCTCGGGTCACCAGAAGCCATTGCCCGCAGTGCCCGGGGGCTTGGG
GCCAGTTCACAAGGAGCTGGAGGAAGTTGCCGTGAAATTCGTCCGCCTGGTCAACTATAACAAG
ATGGTCTTCTGCCCCTACTACGACGCGATCCTCAGCAAACTCCTCCTCCGGTCCTAG

hide sequence

RefSeq Acc Id:

XM_013513982 ⟹ XP_013369436

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,131,561 - 13,161,318 (-)	NCBI

Sequence:

show sequence

CGATGACTGGGGGGGGACGGGGCAGCGGCTGGGAGGGCGGGCGGCGGGCGGCCTCCGGGCGCGC
CCCGCTGGGCTTGCGTCCCCGCCACTCCCTCCCTGGCCCAAACTGTTGTTTACACCGGAACCCA
GCCCGGGGGGTTGGGAGCGCTGCGCGCGGGGGACGCGCTGCTCGGCCTCCCGGGACGGACCCCG
CTCGGCCGCTGACAGACCTGCCGCAGGGCAGCGCGCCTGCTGTGTGCATCTTCGCGGAAGCGCG
GGGGCTCCGGCACGGCACGGAAAGTGAATACACTTAATTGAGAATGTCTGAAAACATTGACAAG
TCCAATATAAATCAGTCAAATGATTCTGAGCAGGGCCTGGATGGTGCCGTGGAACATTCTGATG
AAGCTTTACAGAAGAATGTAACATTGGACTCTTCTAGTCCCCACAGGGTGCAAAGACCTCACTC
TAGTCCCCCTCGGTTCGTGACAGTCGAAGAACTTGTGGAGACAGCAAAAGGCGTCACCAACATG
GCTCTAGCCCATGAGATCGTGGTAAATGGAGACTTCCGGATTCACCCTGTGGACTTACCAGAGG
ACAGCTTGGAGAAGAGAGTAAAGGAGATCGTACATAAAGCTTTTTGGGATTGCCTGAGTGTCCA
ACTAAGTGAAAACCCCCCGACGTACGACCATGCCATCAAACTTGTGGGAGAGATCAAAGAGACA
CTTTTATCTTTCCTGCTGCCTGGTCACACTCGACTGAGAAACCAGATAACAGAAGTCTTGGACC
TGGATCTGATAAGGCAGGAAGCAGAGAACGGAGCCCTGGACATTGCTAAGCTGGCAGAATTCAT
CATTGGCATGATGGGGACACTGTGTGCGCCCGCTCGAGACGAGGAAGTGAAGAAGCTGAAGGAC
ATTAAGGAGATCGTGCCCCTTTTCAGGGCAATGTTTGCTGTGCTGGACCTCATGAAAGTGGACA
TGGCCAACTTCGCCATCAGCAGCGTCAGACCCCACCTCATGCAGCAGTCGGTTGAGTACGAGAG
GGAGAAGTTTCAAGAACTGCTGGCGAGGCAGCCCAATTCCCTGGACTTTGTCACCCAGTGGCTA
GAAGAAGCCTCTGCTGACCTCATGGCTCAGCGGTACAAACACGCCCTGTCAGCCCAGCGGGAGG
CTGCTGGCTCCGAGGACGCCCTGGTGCTGAGCCCGGTGTCCGTCCAGAACTACGCCTACCTGAA
GCTGCTGAAGTGGGACCACCTCCACAGACCTTTCCCTGAGACAGTGCTGATGGACCAGGCGCGT
TTCCAAGAGCTGCAACATGAGCTGGAGCAGCTGACGGTCCTGGGGGCCGTGCTGCTGGTCACGT
TCAGCACGGCGGGCGCCGGCGTCTCCAGCCGGGCGGACTTCGCGGAGAGACTCAAGATGATCGT
GAAGGTGCTGCTGACTGACATGCACCTGCCCTCCTTCCGCCTGGACGAGGCCCTGACCACCGTC
GGGGAGAAAGTGTGCCAGGAGCTGAGCAGCTGCCTCGCGCTGTGTGGATCCCCCGCCTTATCCA
GCGACAGGGAGACCGTGCTCAAGGGCCGGATCCAGGCCGTGGGCAGCCGCGACGACCCTGTCCG
CAGGATCATGGAGTCCCGAATCCTGACCTTCTTGGAGACCTACCTGGCCTCGGGTCACCAGAAG
CCATTGCCCGCAGTGCCCGGGGGCTTGGGGCCAGTTCACAAGGAGCTGGAGGAAGTTGCCGTGA
AATTCGTCCGCCTGGTCAACTATAACAAGATGGTCTTCTGCCCCTACTACGACGCGATCCTCAG
CAAACTCCTCCTCCGGTCCTAG

hide sequence

RefSeq Acc Id:

XM_013513983 ⟹ XP_013369437

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,131,561 - 13,159,682 (-)	NCBI

Sequence:

show sequence

GTAGCCCAGGCTGGCCTCAAATGGGCAGCTTCCTCCTGCCTGGGCCTCCCAAATGGTGGGATTA
CAGGCAGGCTCCACTCCAGGCTCCAGATAAGCGAATGTTGAATGGAAGGAAGTGATGAACGCCA
GACGTCTCGCACCAGCCCTGCAGGAGTTGGAGAAAAGTGCAAACACTAATGAGGAAAGTGAATA
CACTTAATTGAGAATGTCTGAAAACATTGACAAGTCCAATATAAATCAGTCAAATGATTCTGAG
CAGGGCCTGGATGGTGCCGTGGAACATTCTGATGAAGCTTTACAGAAGAATGTAACATTGGACT
CTTCTAGTCCCCACAGGGTGCAAAGACCTCACTCTAGTCCCCCTCGGTTCGTGACAGTCGAAGA
ACTTGTGGAGACAGCAAAAGGCGTCACCAACATGGCTCTAGCCCATGAGATCGTGGTAAATGGA
GACTTCCGGATTCACCCTGTGGACTTACCAGAGGACAGCTTGGAGAAGAGAGTAAAGGAGATCG
TACATAAAGCTTTTTGGGATTGCCTGAGTGTCCAACTAAGTGAAAACCCCCCGACGTACGACCA
TGCCATCAAACTTGTGGGAGAGATCAAAGAGACACTTTTATCTTTCCTGCTGCCTGGTCACACT
CGACTGAGAAACCAGATAACAGAAGTCTTGGACCTGGATCTGATAAGGCAGGAAGCAGAGAACG
GAGCCCTGGACATTGCTAAGCTGGCAGAATTCATCATTGGCATGATGGGGACACTGTGTGCGCC
CGCTCGAGACGAGGAAGTGAAGAAGCTGAAGGACATTAAGGAGATCGTGCCCCTTTTCAGGGCA
ATGTTTGCTGTGCTGGACCTCATGAAAGTGGACATGGCCAACTTCGCCATCAGCAGCGTCAGAC
CCCACCTCATGCAGCAGTCGGTTGAGTACGAGAGGGAGAAGTTTCAAGAACTGCTGGCGAGGCA
GCCCAATTCCCTGGACTTTGTCACCCAGTGGCTAGAAGAAGCCTCTGCTGACCTCATGGCTCAG
CGGTACAAACACGCCCTGTCAGCCCAGCGGGAGGCTGCTGGCTCCGAGGACGCCCTGGTGCTGA
GCCCGGTGTCCGTCCAGAACTACGCCTACCTGAAGCTGCTGAAGTGGGACCACCTCCACAGACC
TTTCCCTGAGACAGTGCTGATGGACCAGGCGCGTTTCCAAGAGCTGCAACATGAGCTGGAGCAG
CTGACGGTCCTGGGGGCCGTGCTGCTGGTCACGTTCAGCACGGCGGGCGCCGGCGTCTCCAGCC
GGGCGGACTTCGCGGAGAGACTCAAGATGATCGTGAAGGTGCTGCTGACTGACATGCACCTGCC
CTCCTTCCGCCTGGACGAGGCCCTGACCACCGTCGGGGAGAAAGTGTGCCAGGAGCTGAGCAGC
TGCCTCGCGCTGTGTGGATCCCCCGCCTTATCCAGCGACAGGGAGACCGTGCTCAAGGGCCGGA
TCCAGGCCGTGGGCAGCCGCGACGACCCTGTCCGCAGGATCATGGAGTCCCGAATCCTGACCTT
CTTGGAGACCTACCTGGCCTCGGGTCACCAGAAGCCATTGCCCGCAGTGCCCGGGGGCTTGGGG
CCAGTTCACAAGGAGCTGGAGGAAGTTGCCGTGAAATTCGTCCGCCTGGTCAACTATAACAAGA
TGGTCTTCTGCCCCTACTACGACGCGATCCTCAGCAAACTCCTCCTCCGGTCCTAG

hide sequence

RefSeq Acc Id:

XM_013513984 ⟹ XP_013369438

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,130,304 - 13,157,692 (-)	NCBI

Sequence:

show sequence

TGGATGGTGCCGTGGAACATTCTGATGAAGCTTTACAGAAGAATGTAACATTGGACTCTTCTAG
TCCCCACAGGGTGCAAAGACCTCACTTCATTCTTTGATGGATGCCCTTGCCTTTGGCACTCTAC
CAGTCTGGTCACATGACACCCAATTAATGTCAGCCGAACCTGAGGCCATGTTATTTGATACTGT
GGTAGTTATATCACTAAGAAGAGTACTTATGCTGGAACCTGTGATCAAGTTTTAAAGGACCCAG
GAATAGCCAAAAAGCTAGTCCCCCTCGGTTCGTGACAGTCGAAGAACTTGTGGAGACAGCAAAA
GGCGTCACCAACATGGCTCTAGCCCATGAGATCGTGGTAAATGGAGACTTCCGGATTCACCCTG
TGGACTTACCAGAGGACAGCTTGGAGAAGAGAGTAAAGGAGATCGTACATAAAGCTTTTTGGGA
TTGCCTGAGTGTCCAACTAAGTGAAAACCCCCCGACGTACGACCATGCCATCAAACTTGTGGGA
GAGATCAAAGAGACACTTTTATCTTTCCTGCTGCCTGGTCACACTCGACTGAGAAACCAGATAA
CAGAAGTCTTGGACCTGGATCTGATAAGGCAGGAAGCAGAGAACGGAGCCCTGGACATTGCTAA
GCTGGCAGAATTCATCATTGGCATGATGGGGACACTGTGTGCGCCCGCTCGAGACGAGGAAGTG
AAGAAGCTGAAGGACATTAAGGAGATCGTGCCCCTTTTCAGGGCAATGTTTGCTGTGCTGGACC
TCATGAAAGTGGACATGGCCAACTTCGCCATCAGCAGCGTCAGACCCCACCTCATGCAGCAGTC
GGTTGAGTACGAGAGGGAGAAGTTTCAAGAACTGCTGGCGAGGCAGCCCAATTCCCTGGACTTT
GTCACCCAGTGGCTAGAAGAAGCCTCTGCTGACCTCATGGCTCAGCGGTACAAACACGCCCTGT
CAGCCCAGCGGGAGGCTGCTGGCTCCGAGGACGCCCTGGTGCTGAGCCCGGTGTCCGTCCAGAA
CTACGCCTACCTGAAGCTGCTGAAGTGGGACCACCTCCACAGACCTTTCCCTGAGACAGTGCTG
ATGGACCAGGCGCGTTTCCAAGAGCTGCAACATGAGCTGGAGCAGCTGACGGTCCTGGGGGCCG
TGCTGCTGGTCACGTTCAGCACGGCGGGCGCCGGCGTCTCCAGCCGGGCGGACTTCGCGGAGAG
ACTCAAGATGATCGTGAAGGTGCTGCTGACTGACATGCACCTGCCCTCCTTCCGCCTGGACGAG
GCCCTGACCACCGTCGGGGAGAAAGTGTGCCAGGAGCTGAGCAGCTGCCTCGCGCTGTGTGGAT
CCCCCGCCTTATCCAGCGACAGGGAGACCGTGCTCAAGGGCCGGATCCAGGCCGTGGGCAGCCG
CGACGACCCTGTCCGCAGGATCATGGAGTCCCGAATCCTGACCTTCTTGGAGACCTACCTGGCC
TCGGGTCACCAGAAGCCATTGCCCGCAGTGCCCGGGGGCTTGGGGCCAGTTCACAAGGAGCTGG
AGGAAGTTGCCGTGAAATTCGTCCGCCTGGTCAACTATAACAAGATGGTCTTCTGCCCCTACTA
CGACGCGATCCTCAGCAAACTCCTCCTCCGGTCCTAGCACGCAGGCGCCCCGCCGCGGTGTTGG
TCCTGGCGGCGCACACCTGGGCTCAGCTCTGCGTCGCTCCGGGAAGCGGCTAAGGAGTACAGTT
CTGTCAACAGCATTCATTCCAAGGGCAAGGATATTGTGTATCGCTGGTGAAAAGACTTGTTGAA
GAAGGTACTGAATTCTATTTTGAGAGGTTGTATTTATGAGTGCAAGTTTACAAATCAAAGGAGC
TTTTGGTTGAGTGTGATAGGTGACACTCAGCTTTTTAGCGGGTAACCGCTGTGTCGCCACTGTT
ACCCCATAGAGAGGGCAGTGGCCGCGTCCTCCCAAGGAGGCTGGGACCCGGCCCTGCGGCTGGG
TGGTCTCCTGTCCGGCGGACCGTGCTGACCCCAGAGTCCAAGAGGCCAAGCCAGGACTTCACCT
CCTGCCCCTCCCGCACAGAGCCGCAGTCCCCTTCCCCCCCGGGTATTTTGTGACAGAAGGGCAG
TGTTTATAATCTCACACACACCTACTGCTTCCGCCACGCCTGGCCCAGCCAGGGCCCCGGAGCC
CTTTTGTTTTAGAGCAGAGTTGATTTTGAAAAGCTTGTTCTGTTGCATTGAGGAGATAGTGCCC
TGTTAAAGTGGTTGGCCAGTGTGGGCAAGGCCCTGGGTTCAATCCTTGGCACTTCAAAAAAAAG
AGGGGAGAGAAAGAGATACACAAGCTGGGCACGGTGCACGCCTGTAGTGCTGTAGCCCCAGCTA
CTTGGGAGGCTGAGGCAAGAACGTGCTTTGAGCCCACGACTTCAGAGCCAGCCTGGGCAACATA
GAGACTGTCTCAAATGAAGCGTATTCTTTTTTACAGGATTCCTGTACCTGAACTGGGTGATAGC
AGTTCAGTCCTAGGAGAGCTAAAGAAAGGAATTTCTTTTACTTGTTAGCCTGGCAAGTGAGGGG
GGAAATTTTGAAGATGTGTTTTTATGTGTATACATACATATACGTATATGGACATACAATTTAA
TGTAATAAATGTCTGAAGTTTCTTTATTGAAAAATTCACTGTGATATAATATACAGATGCATTG
ACTGAATTTGAATTCTGGACCTAGATCGAAATATTTTTAGGTAAAATAGCCCAGTCTCACTAAT
CTAGATGGGAAGTCTTAAAATAACCCCTGGTGTTTGGATAGTAATTTCCAAGAACTTCAGTGAC
CAGTATTCCTGACATGTTCTGTGACTGTAATTTGAATCTTACAGGTGATCTGCTAAAAAAATAA
ATGAAATGTGTACA

hide sequence

RefSeq Acc Id:

XR_001233912

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,121,618 - 13,157,750 (-)	NCBI

Sequence:

show sequence

ATGTCTGAAAACATTGACAAGTCCAATATAAATCAGTCAAATGATTCTGAGCAGGGCCTGGATG
GTGCCGTGGAACATTCTGATGAAGCTTTACAGAAGAATGTAACATTGGACTCTTCTAGTCCCCA
CAGGGTGCAAAGACCTCACTCTAGTCCCCCTCGGTTCGTGACAGTCGAAGAACTTGTGGAGACA
GCAAAAGGCGTCACCAACATGGCTCTAGCCCATGAGATCGTGGTAAATGGAGACTTCCGGATTC
ACCCTGTGGACTTACCAGAGGACAGCTTGGAGAAGAGAGTAAAGGAGATCGTACATAAAGCTTT
TTGGGATTGCCTGAGTGTCCAACTAAGTGAAAACCCCCCGACGTACGACCATGCCATCAAACTT
GTGGGAGAGATCAAAGAGACACTTTTATCTTTCCTGCTGCCTGGTCACACTCGACTGAGAAACC
AGATAACAGAAGTCTTGGACCTGGATCTGATAAGGCAGGAAGCAGAGAACGGAGCCCTGGACAT
TGCTAAGCTGGCAGAATTCATCATTGGCATGATGGGGACACTGTGTGCGCCCGCTCGAGACGAG
GAAGTGAAGAAGCTGAAGGACATTAAGGAGATCGTGCCCCTTTTCAGGGCAATGTTTGCTGTGC
TGGACCTCATGAAAGTGGACATGGCCAACTTCGCCATCAGCAGCGTCAGACCCCACCTCATGCA
GCAGTCGGTTGAGTACGAGAGGGAGAAGTTTCAAGAACTGCTGGCGAGGCAGCCCAATTCCCTG
GACTTTGTCACCCAGTGGCTAGAAGAAGCCTCTGCTGACCTCATGGCTCAGCGGTACAAACACG
CCCTGTCAGCCCAGCGGGAGGCTGCTGGCTCCGAGGACGCCCTGGTGCTGAGCCCGGTGTCCGT
CCAGAACTACGCCTACCTGAAGCTGCTGAAGTGGGACCACCTCCACAGACCTTTCCCTGAGACA
GTGCTGATGGACCAGGCGCGTTTCCAAGAGCTGCAACATGAGCTGGAGCAGCTGACGGTCCTGG
GGGCCGTGCTGCTGGTCACGTTCAGCACGGCGGGCGCCGGCGTCTCCAGCCGGGCGGACTTCGC
GGAGAGACTCAAGATGATCGTGAAGGTGCTGCTGACTGACATGCACCTGCCCTCCTTCCGCCTG
GACGAGGCCCTGACCACCGTCGGGGAGAAAGTGTGCCAGGAGCTGAGCAGCTGCCTCGCGCTGT
GTGGATCCCCCGCCTTATCCAGCGACAGGGAGACCGTGCTCAAGGGCCGGATCCAGGCCGTGGG
CAGCCGCGACGACCCTGTCCGCAGGATCATGGAGTCCCGAATCCTGACCTTCTTGGAGACCTAC
CTGGCCTCGGGTCACCAGAAGCCATTGCCCGCAGTGCCCGGGGGCTTGGGGCCAGTTCACAAGG
AGCTGGAGGAAGTTGCCGTGAAATTCGTCCGCCTGGTCAACTATAACAAGATGGTCTTCTGCCC
CTACTACGACGCGATCCTCAGCAAACTCCTCCTCCGGTCCTAGCACGCAGGCGCCCCGCCGCGG
TGTTGGTCCTGGCGGCGCACACCTGGGCTCAGCTCTGCGTCGCTCCGGGAAGCGGCTAAGGAGT
ACAGTTCTGTCAACAGCATTCATTCCAAGGGCAAGGATATTGTGTATCGCTGGTGAAAAGACTT
GTTGAAGAAGGACGTTCTTAGGTCATCTGGCTCAAAGATTACTGCCAAGTCACTCATCACAGTG
ACCCTAAGTCTAAACCTACAATGGAAAGGCCACGTTACCTGCCCCTCCCACCCTGGATTTAAAT
CAACAAACTGAAGCCTCAGTACTGATCTGAAGTC

hide sequence

RefSeq Acc Id:

XR_001233913

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	13,097,785 - 13,157,750 (-)	NCBI

Sequence:

show sequence

ATGTCTGAAAACATTGACAAGTCCAATATAAATCAGTCAAATGATTCTGAGCAGGGCCTGGATG
GTGCCGTGGAACATTCTGATGAAGCTTTACAGAAGAATGTAACATTGGACTCTTCTAGTCCCCA
CAGGGTGCAAAGACCTCACTCTAGTCCCCCTCGGTTCGTGACAGTCGAAGAACTTGTGGAGACA
GCAAAAGGCGTCACCAACATGGCTCTAGCCCATGAGATCGTGGTAAATGGAGACTTCCGGATTC
ACCCTGTGGACTTACCAGAGGACAGCTTGGAGAAGAGAGTAAAGGAGATCGTACATAAAGCTTT
TTGGGATTGCCTGAGTGTCCAACTAAGTGAAAACCCCCCGACGTACGACCATGCCATCAAACTT
GTGGGAGAGATCAAAGAGACACTTTTATCTTTCCTGCTGCCTGGTCACACTCGACTGAGAAACC
AGATAACAGAAGTCTTGGACCTGGATCTGATAAGGCAGGAAGCAGAGAACGGAGCCCTGGACAT
TGCTAAGCTGGCAGAATTCATCATTGGCATGATGGGGACACTGTGTGCGCCCGCTCGAGACGAG
GAAGTGAAGAAGCTGAAGGACATTAAGGAGATCGTGCCCCTTTTCAGGGCAATGTTTGCTGTGC
TGGACCTCATGAAAGTGGACATGGCCAACTTCGCCATCAGCAGCGTCAGACCCCACCTCATGCA
GCAGTCGGTTGAGTACGAGAGGGAGAAGTTTCAAGAACTGCTGGCGAGGCAGCCCAATTCCCTG
GACTTTGTCACCCAGTGGCTAGAAGAAGCCTCTGCTGACCTCATGGCTCAGCGGTACAAACACG
CCCTGTCAGCCCAGCGGGAGGCTGCTGGCTCCGAGGACGCCCTGGTGCTGAGCCCGGTGTCCGT
CCAGAACTACGCCTACCTGAAGCTGCTGAAGTGGGACCACCTCCACAGACCTTTCCCTGAGACA
GTGCTGATGGACCAGGCGCGTTTCCAAGAGCTGCAACATGAGCTGGAGCAGCTGACGGTCCTGG
GGGCCGTGCTGCTGGTCACGTTCAGCACGGCGGGCGCCGGCGTCTCCAGCCGGGCGGACTTCGC
GGAGAGACTCAAGATGATCGTGAAGGTGCTGCTGACTGACATGCACCTGCCCTCCTTCCGCCTG
GACGAGGCCCTGACCACCGTCGGGGAGAAAGTGTGCCAGGAGCTGAGCAGCTGCCTCGCGCTGT
GTGGATCCCCCGCCTTATCCAGCGACAGGGAGACCGTGCTCAAGGGCCGGATCCAGGCCGTGGG
CAGCCGCGACGACCCTGTCCGCAGGATCATGGAGTCCCGAATCCTGACCTTCTTGGAGACCTAC
CTGGCCTCGGGTCACCAGAAGCCATTGCCCGCAGTGCCCGGGGGCTTGGGGCCAGTTCACAAGG
AGCTGGAGGAAGTTGCCGTGAAATTCGTCCGCCTGGTCAACTATAACAAGATGGTCTTCTGCCC
CTACTACGACGCGATCCTCAGCAAACTCCTCCTCCGGTCCTAGCACGCAGGCGCCCCGCCGCGG
TGTTGGTCCTGGCGGCGCACACCTGGGCTCAGCTCTGCGTCGCTCCGGGAAGCGGCTAAGGAGT
ACAGTTCTGTCAACAGCATTCATTCCAAGGGCAAGGATATTGTGTATCGCTGGTGAAAAGACTT
GTTGAAGAAGCTCACTCTCCCTGGAACGTGCAAATTTCACTTTCATCTTCAGAGCTCATACCTT
TCACGGCAGCCCAGACACGAACCTCTGCTCTGCGCGGACAGCTGTCAGTGAGGTTCTGAAGCTT
AGAGCTACAATCTGACTACCCGCATCACCTTTCTCTTCATCCCAGTAAGGGAGACAATACTATT
TCACAGGCTGTTCTGAGGACTCTGTGAGGTAATAAAAGCAAGGCCTTTCAAACACTGCCCGGCA
GTATAAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013369434	(Get FASTA)	NCBI Sequence Viewer
	XP_013369435	(Get FASTA)	NCBI Sequence Viewer
	XP_013369436	(Get FASTA)	NCBI Sequence Viewer
	XP_013369437	(Get FASTA)	NCBI Sequence Viewer
	XP_013369438	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000020686
	ENSCLAP00000020686.1

RefSeq Acc Id:	XP_013369434 ⟸ XM_013513980
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VYI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSENIDKSNINQSNDSEQGLDGAVEHSDEALQKNVTLDSSSPHRVQRPHSSPPRFVTVEELVET AKGVTNMALAHEIVVNGDFRIHPVDLPEDSLEKRVKEIVHKAFWDCLSVQLSENPPTYDHAIKL VGEIKETLLSFLLPGHTRLRNQITEVLDLDLIRQEAENGALDIAKLAEFIIGMMGTLCAPARDE EVKKLKDIKEIVPLFRAMFAVLDLMKVDMANFAISSVRPHLMQQSVEYEREKFQELLARQPNSL DFVTQWLEEASADLMAQRYKHALSAQREAAGSEDALVLSPVSVQNYAYLKLLKWDHLHRPFPET VLMDQARFQELQHELEQLTVLGAVLLVTFSTAGAGVSSRADFAERLKMIVKVLLTDMHLPSFRL DEALTTVGEKVCQELSSCLALCGSPALSSDRETVLKGRIQAVGSRDDPVRRIMESRILTFLETY LASGHQKPLPAVPGGLGPVHKELEEVAVKFVRLVNYNKMVFCPYYDAILSKLLLRS hide sequence

RefSeq Acc Id:

XP_013369438 ⟸ XM_013513984

- Peptide Label:

isoform X2

- Sequence:

show sequence

MALAHEIVVNGDFRIHPVDLPEDSLEKRVKEIVHKAFWDCLSVQLSENPPTYDHAIKLVGEIKE
TLLSFLLPGHTRLRNQITEVLDLDLIRQEAENGALDIAKLAEFIIGMMGTLCAPARDEEVKKLK
DIKEIVPLFRAMFAVLDLMKVDMANFAISSVRPHLMQQSVEYEREKFQELLARQPNSLDFVTQW
LEEASADLMAQRYKHALSAQREAAGSEDALVLSPVSVQNYAYLKLLKWDHLHRPFPETVLMDQA
RFQELQHELEQLTVLGAVLLVTFSTAGAGVSSRADFAERLKMIVKVLLTDMHLPSFRLDEALTT
VGEKVCQELSSCLALCGSPALSSDRETVLKGRIQAVGSRDDPVRRIMESRILTFLETYLASGHQ
KPLPAVPGGLGPVHKELEEVAVKFVRLVNYNKMVFCPYYDAILSKLLLRS

hide sequence

RefSeq Acc Id:	XP_013369435 ⟸ XM_013513981
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VYI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSENIDKSNINQSNDSEQGLDGAVEHSDEALQKNVTLDSSSPHRVQRPHSSPPRFVTVEELVET AKGVTNMALAHEIVVNGDFRIHPVDLPEDSLEKRVKEIVHKAFWDCLSVQLSENPPTYDHAIKL VGEIKETLLSFLLPGHTRLRNQITEVLDLDLIRQEAENGALDIAKLAEFIIGMMGTLCAPARDE EVKKLKDIKEIVPLFRAMFAVLDLMKVDMANFAISSVRPHLMQQSVEYEREKFQELLARQPNSL DFVTQWLEEASADLMAQRYKHALSAQREAAGSEDALVLSPVSVQNYAYLKLLKWDHLHRPFPET VLMDQARFQELQHELEQLTVLGAVLLVTFSTAGAGVSSRADFAERLKMIVKVLLTDMHLPSFRL DEALTTVGEKVCQELSSCLALCGSPALSSDRETVLKGRIQAVGSRDDPVRRIMESRILTFLETY LASGHQKPLPAVPGGLGPVHKELEEVAVKFVRLVNYNKMVFCPYYDAILSKLLLRS hide sequence

RefSeq Acc Id:	XP_013369436 ⟸ XM_013513982
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VYI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSENIDKSNINQSNDSEQGLDGAVEHSDEALQKNVTLDSSSPHRVQRPHSSPPRFVTVEELVET AKGVTNMALAHEIVVNGDFRIHPVDLPEDSLEKRVKEIVHKAFWDCLSVQLSENPPTYDHAIKL VGEIKETLLSFLLPGHTRLRNQITEVLDLDLIRQEAENGALDIAKLAEFIIGMMGTLCAPARDE EVKKLKDIKEIVPLFRAMFAVLDLMKVDMANFAISSVRPHLMQQSVEYEREKFQELLARQPNSL DFVTQWLEEASADLMAQRYKHALSAQREAAGSEDALVLSPVSVQNYAYLKLLKWDHLHRPFPET VLMDQARFQELQHELEQLTVLGAVLLVTFSTAGAGVSSRADFAERLKMIVKVLLTDMHLPSFRL DEALTTVGEKVCQELSSCLALCGSPALSSDRETVLKGRIQAVGSRDDPVRRIMESRILTFLETY LASGHQKPLPAVPGGLGPVHKELEEVAVKFVRLVNYNKMVFCPYYDAILSKLLLRS hide sequence

RefSeq Acc Id:	XP_013369437 ⟸ XM_013513983
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VYI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSENIDKSNINQSNDSEQGLDGAVEHSDEALQKNVTLDSSSPHRVQRPHSSPPRFVTVEELVET AKGVTNMALAHEIVVNGDFRIHPVDLPEDSLEKRVKEIVHKAFWDCLSVQLSENPPTYDHAIKL VGEIKETLLSFLLPGHTRLRNQITEVLDLDLIRQEAENGALDIAKLAEFIIGMMGTLCAPARDE EVKKLKDIKEIVPLFRAMFAVLDLMKVDMANFAISSVRPHLMQQSVEYEREKFQELLARQPNSL DFVTQWLEEASADLMAQRYKHALSAQREAAGSEDALVLSPVSVQNYAYLKLLKWDHLHRPFPET VLMDQARFQELQHELEQLTVLGAVLLVTFSTAGAGVSSRADFAERLKMIVKVLLTDMHLPSFRL DEALTTVGEKVCQELSSCLALCGSPALSSDRETVLKGRIQAVGSRDDPVRRIMESRILTFLETY LASGHQKPLPAVPGGLGPVHKELEEVAVKFVRLVNYNKMVFCPYYDAILSKLLLRS hide sequence

RefSeq Acc Id:

ENSCLAP00000020686 ⟸ ENSCLAT00000020884

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014173	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000020884	ENTREZGENE
	ENSCLAT00000020884.1	UniProtKB/TrEMBL
InterPro	Tcp11	UniProtKB/TrEMBL
NCBI Gene	Tcp11l1	ENTREZGENE
PANTHER	PTHR12832	UniProtKB/TrEMBL
	T-COMPLEX PROTEIN 11-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	Tcp11	UniProtKB/TrEMBL
UniProt	A0A8C2VYI6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Tcp11l1	t-complex 11 like 1		t-complex 11, testis-specific-like 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar