TCP11L1 (t-complex 11 like 1) - Rat Genome Database

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Gene: TCP11L1 (t-complex 11 like 1) Chlorocebus sabaeus
Analyze
Symbol: TCP11L1
Name: t-complex 11 like 1
RGD ID: 18772850
Description: INVOLVED IN signal transduction (inferred); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN microtubule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-complex protein 11-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,145,355 - 32,177,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl132,146,244 - 32,177,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038129,301,279 - 129,339,249 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
microtubule  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TCP11L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,145,355 - 32,177,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl132,146,244 - 32,177,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038129,301,279 - 129,339,249 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TCP11L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,039,572 - 33,073,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,039,417 - 33,105,943 (+)EnsemblGRCh38hg38GRCh38
GRCh371133,061,118 - 33,095,109 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,017,720 - 33,051,454 (+)NCBINCBI36Build 36hg18NCBI36
Celera1133,207,691 - 33,241,809 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1132,755,664 - 32,789,782 (+)NCBIHuRef
CHM1_11133,060,432 - 33,094,574 (+)NCBICHM1_1
T2T-CHM13v2.01133,175,146 - 33,209,116 (+)NCBIT2T-CHM13v2.0
Tcp11l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,497,587 - 104,542,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,487,633 - 104,542,514 (-)EnsemblGRCm39 Ensembl
GRCm382104,667,242 - 104,712,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,657,288 - 104,712,169 (-)EnsemblGRCm38mm10GRCm38
MGSCv372104,520,137 - 104,552,319 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362104,480,819 - 104,513,001 (-)NCBIMGSCv36mm8
Celera2105,918,606 - 105,947,980 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.87NCBI
Tcp11l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83111,478,787 - 111,547,553 (-)NCBIGRCr8
mRatBN7.2391,047,006 - 91,092,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,998,270 - 91,092,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,550,387 - 94,585,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03103,149,454 - 103,184,730 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,979,523 - 101,014,809 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0394,621,433 - 94,657,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,624,071 - 94,657,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,247,426 - 101,282,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4390,010,390 - 90,046,373 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera390,115,833 - 90,150,770 (-)NCBICelera
Cytogenetic Map3q32NCBI
Tcp11l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,130,304 - 13,161,318 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,097,785 - 13,161,623 (-)NCBIChiLan1.0ChiLan1.0
TCP11L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,262,724 - 35,302,885 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,265,855 - 35,300,976 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,015,724 - 33,050,236 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,901,531 - 32,934,916 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,901,584 - 32,948,458 (+)Ensemblpanpan1.1panPan2
TCP11L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11834,566,940 - 34,605,678 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1834,570,501 - 34,601,648 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1834,178,597 - 34,217,379 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01835,178,063 - 35,216,862 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1835,177,453 - 35,216,831 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,746,563 - 34,785,342 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01834,330,489 - 34,369,088 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,967,883 - 35,004,468 (-)NCBIUU_Cfam_GSD_1.0
Tcp11l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,716,056 - 31,757,145 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,840,054 - 4,881,364 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,839,661 - 4,881,990 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCP11L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,855,471 - 27,899,766 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1227,854,394 - 27,903,166 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2230,353,850 - 30,399,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tcp11l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,150,338 - 14,180,501 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,144,617 - 14,180,626 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 5 43
Low 31 20 17
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000003317   ⟹   ENSCSAP00000001601
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl132,146,244 - 32,177,155 (-)Ensembl
RefSeq Acc Id: XM_008002603   ⟹   XP_008000794
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1132,145,355 - 32,177,745 (-)NCBI
Vero_WHO_p1.0NW_023666038129,307,284 - 129,339,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008002614   ⟹   XP_008000805
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1132,145,355 - 32,177,350 (-)NCBI
Vero_WHO_p1.0NW_023666038129,307,959 - 129,338,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008002624   ⟹   XP_008000815
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1132,145,355 - 32,177,350 (-)NCBI
Vero_WHO_p1.0NW_023666038129,307,260 - 129,338,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008002632   ⟹   XP_008000823
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1132,145,355 - 32,174,119 (-)NCBI
Vero_WHO_p1.0NW_023666038129,301,279 - 129,335,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008002641   ⟹   XP_008000832
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1132,145,355 - 32,174,119 (-)NCBI
Vero_WHO_p1.0NW_023666038129,301,279 - 129,335,718 (-)NCBI
Sequence:
RefSeq Acc Id: XP_008000794   ⟸   XM_008002603
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QZ12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000815   ⟸   XM_008002624
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QZ12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000805   ⟸   XM_008002614
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QZ12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000832   ⟸   XM_008002641
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008000823   ⟸   XM_008002632
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000001601   ⟸   ENSCSAT00000003317


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003317.1 UniProtKB/TrEMBL
InterPro Tcp11 UniProtKB/TrEMBL
KEGG Report csab:103238035 UniProtKB/TrEMBL
NCBI Gene TCP11L1 ENTREZGENE
PANTHER PTHR12832 UniProtKB/TrEMBL
  T-COMPLEX PROTEIN 11-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Tcp11 UniProtKB/TrEMBL
UniProt A0A0D9QZ12 ENTREZGENE, UniProtKB/TrEMBL