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Gene: Tcp11l1 (t-complex 11 like 1) Heterocephalus glaber

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Symbol:

Tcp11l1

Name:

t-complex 11 like 1

RGD ID:

18920746

Description:

INVOLVED IN signal transduction (inferred); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); intellectual disability (ortholog); FOUND IN microtubule (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-complex protein 11-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCP11L1 (t-complex 11 like 1)	NCBI	Ortholog
Mus musculus (house mouse):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcp11l1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCP11L1 (t-complex 11 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	14,150,338 - 14,180,501 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	14,144,617 - 14,180,626 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Naked Mole-Rat	bladder exstrophy-epispadias-cloacal exstrophy complex		ISO	TCP11L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Exstrophy-epispadias complex	ClinVar	PMID:25741868
Tcp11l1	Naked Mole-Rat	intellectual disability		ISO	TCP11L1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Naked Mole-Rat	signal transduction	involved_in	IEA	PANTHER:PTN000303065 and PANTHER:PTN000303066	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Naked Mole-Rat	microtubule	located_in	ISO	TCP11L1 (Homo sapiens)	9068941	PMID:21525035	UniProt	PMID:21525035

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tcp11l1	Naked Mole-Rat	protein binding	enables	ISO	UniProtKB:O95947 more ...	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:21993625	PMID:30032202

Tcp11l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	14,150,338 - 14,180,501 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	14,144,617 - 14,180,626 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

TCP11L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,039,572 - 33,073,563 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,039,417 - 33,105,943 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,061,118 - 33,095,109 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	33,017,720 - 33,051,454 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	33,207,691 - 33,241,809 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	32,755,664 - 32,789,782 (+)	NCBI		HuRef
CHM1_1	11	33,060,432 - 33,094,574 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,175,146 - 33,209,116 (+)	NCBI		T2T-CHM13v2.0

Tcp11l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	104,497,587 - 104,542,525 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	104,487,633 - 104,542,514 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	104,667,242 - 104,712,169 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	104,657,288 - 104,712,169 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	104,520,137 - 104,552,319 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	104,480,819 - 104,513,001 (-)	NCBI		MGSCv36	mm8
Celera	2	105,918,606 - 105,947,980 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.87	NCBI

Tcp11l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,478,787 - 111,547,553 (-)	NCBI		GRCr8
mRatBN7.2	3	91,047,006 - 91,092,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,998,270 - 91,092,006 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,550,387 - 94,585,662 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	103,149,454 - 103,184,730 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,979,523 - 101,014,809 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,621,433 - 94,657,467 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,624,071 - 94,657,377 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	101,247,426 - 101,282,177 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	90,010,390 - 90,046,373 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	90,115,833 - 90,150,770 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

Tcp11l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	13,130,304 - 13,161,318 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	13,097,785 - 13,161,623 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCP11L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	35,262,724 - 35,302,885 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	35,265,855 - 35,300,976 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	33,015,724 - 33,050,236 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	32,901,531 - 32,934,916 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	32,901,584 - 32,948,458 (+)	Ensembl	panpan1.1		panPan2

TCP11L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	34,566,940 - 34,605,678 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	34,570,501 - 34,601,648 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	34,178,597 - 34,217,379 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	35,178,063 - 35,216,862 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	35,177,453 - 35,216,831 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,746,563 - 34,785,342 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	34,330,489 - 34,369,088 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,967,883 - 35,004,468 (-)	NCBI		UU_Cfam_GSD_1.0

Tcp11l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	31,716,056 - 31,757,145 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,840,054 - 4,881,364 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,839,661 - 4,881,990 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCP11L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,855,471 - 27,899,766 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,854,394 - 27,903,166 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	30,353,850 - 30,399,032 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCP11L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	32,145,355 - 32,177,745 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	32,146,244 - 32,177,155 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	129,301,279 - 129,339,249 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_004852074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021264384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021264385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021264386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021264387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021264388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01047489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GEBF01004157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH166126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000026361 ⟹ ENSHGLP00000026129

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624767	14,150,338 - 14,180,501 (-)	Ensembl

RefSeq Acc Id:

XM_004852074 ⟹ XP_004852131

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624767	14,151,341 - 14,180,625 (-)	NCBI

RefSeq Acc Id:

XM_021264384 ⟹ XP_021120043

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624767	14,151,341 - 14,180,001 (-)	NCBI

RefSeq Acc Id:

XM_021264385 ⟹ XP_021120044

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624767	14,144,617 - 14,176,341 (-)	NCBI

RefSeq Acc Id:

XM_021264386 ⟹ XP_021120045

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624767	14,144,617 - 14,176,311 (-)	NCBI

RefSeq Acc Id:

XM_021264387 ⟹ XP_021120046

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624767	14,151,364 - 14,180,626 (-)	NCBI

RefSeq Acc Id:

XM_021264388 ⟹ XP_021120047

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624767	14,144,617 - 14,180,625 (-)	NCBI


Protein RefSeqs	XP_004852131	(Get FASTA)	NCBI Sequence Viewer
	XP_021120043	(Get FASTA)	NCBI Sequence Viewer
	XP_021120044	(Get FASTA)	NCBI Sequence Viewer
	XP_021120045	(Get FASTA)	NCBI Sequence Viewer
	XP_021120046	(Get FASTA)	NCBI Sequence Viewer
	XP_021120047	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHA98501	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000026129
GenBank Protein	JAN99475	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021120047 ⟸ XM_021264388
- Peptide Label:	isoform X4
- UniProtKB:	A0AAX6TCI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021120044 ⟸ XM_021264385
- Peptide Label:	isoform X1
- UniProtKB:	G5AN91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021120045 ⟸ XM_021264386
- Peptide Label:	isoform X2
- UniProtKB:	A0AAX6TEC1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_004852131 ⟸ XM_004852074
- Peptide Label:	isoform X1
- UniProtKB:	G5AN91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021120043 ⟸ XM_021264384
- Peptide Label:	isoform X1
- UniProtKB:	G5AN91 (UniProtKB/TrEMBL)

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000018599	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000026361	ENTREZGENE
InterPro	Tcp11	UniProtKB/TrEMBL
KEGG Report	hgl:101713710	UniProtKB/TrEMBL
NCBI Gene	Tcp11l1	ENTREZGENE
PANTHER	PTHR12832	UniProtKB/TrEMBL
	T-COMPLEX PROTEIN 11-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	Tcp11	UniProtKB/TrEMBL
UniProt	A0AAX6TCI2	ENTREZGENE, UniProtKB/TrEMBL
	A0AAX6TDW3	ENTREZGENE, UniProtKB/TrEMBL
	A0AAX6TEC1	ENTREZGENE, UniProtKB/TrEMBL
	G5AN91	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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