Phf24 (PHD finger protein 24) - Rat Genome Database

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Gene: Phf24 (PHD finger protein 24) Rattus norvegicus
Analyze
Symbol: Phf24
Name: PHD finger protein 24
RGD ID: 1559864
Description: Predicted to enable metal ion binding activity. Predicted to act upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of pain; gamma-aminobutyric acid signaling pathway; and regulation of GABAergic synaptic transmission. Predicted to be active in glutamatergic synapse and synaptic vesicle membrane. Orthologous to human PHF24 (PHD finger protein 24); INTERACTS WITH bisphenol A; cisplatin; dioxygen.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC500446; RGD1559864; similar to mKIAA1045 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,939,261 - 61,966,879 (+)NCBIGRCr8
mRatBN7.2557,143,428 - 57,171,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,142,632 - 57,168,497 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,117,205 - 59,141,642 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0560,936,029 - 60,960,460 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0560,921,446 - 60,945,873 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0558,359,744 - 58,387,446 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,359,498 - 58,383,070 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,885,392 - 62,912,821 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,421,776 - 59,429,691 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,738,269 - 55,760,492 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25242222   PMID:33115988  


Genomics

Comparative Map Data
Phf24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,939,261 - 61,966,879 (+)NCBIGRCr8
mRatBN7.2557,143,428 - 57,171,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,142,632 - 57,168,497 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,117,205 - 59,141,642 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0560,936,029 - 60,960,460 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0560,921,446 - 60,945,873 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0558,359,744 - 58,387,446 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,359,498 - 58,383,070 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,885,392 - 62,912,821 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,421,776 - 59,429,691 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,738,269 - 55,760,492 (+)NCBICelera
Cytogenetic Map5q22NCBI
PHF24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,665,607 - 34,982,544 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,957,608 - 34,982,544 (+)EnsemblGRCh38hg38GRCh38
GRCh37934,957,484 - 34,982,541 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,948,192 - 34,972,541 (+)NCBINCBI36Build 36hg18NCBI36
Celera934,889,783 - 34,914,129 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,913,300 - 34,937,652 (+)NCBIHuRef
CHM1_1934,958,031 - 34,982,378 (+)NCBICHM1_1
T2T-CHM13v2.0934,684,209 - 35,001,725 (+)NCBIT2T-CHM13v2.0
Phf24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39442,872,619 - 42,944,752 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl442,916,660 - 42,944,752 (+)EnsemblGRCm39 Ensembl
GRCm38442,872,618 - 42,944,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl442,916,660 - 42,944,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv37442,930,123 - 42,954,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36442,938,351 - 42,962,707 (+)NCBIMGSCv36mm8
Celera442,952,376 - 42,971,392 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map422.91NCBI
Phf24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,185,110 - 1,204,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554721,186,021 - 1,204,018 (-)NCBIChiLan1.0ChiLan1.0
PHF24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,610,848 - 89,704,596 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1989,616,788 - 89,908,516 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,735,800 - 34,829,555 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,310,959 - 35,635,964 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,611,517 - 35,635,964 (+)Ensemblpanpan1.1panPan2
PHF24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,552,345 - 51,580,762 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,569,770 - 51,577,059 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,121,273 - 50,149,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,617,745 - 52,646,169 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,477,478 - 52,646,169 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,161,844 - 51,190,307 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,147,216 - 51,175,483 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,848,725 - 51,877,244 (+)NCBIUU_Cfam_GSD_1.0
Phf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947166,458,309 - 166,484,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,005,705 - 3,031,744 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,020,421 - 3,031,720 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,757,797 - 235,783,051 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,757,499 - 235,783,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,282,939 - 263,308,438 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11245,635,910 - 45,661,692 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1245,635,885 - 45,661,446 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603842,757,840 - 42,783,466 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624915165,026 - 189,460 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624915164,992 - 189,112 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phf24
111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:931
Count of miRNA genes:268
Interacting mature miRNAs:354
Transcripts:ENSRNOT00000000141, ENSRNOT00000047893
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat

Markers in Region
BI286980  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2557,155,396 - 57,155,608 (+)MAPPERmRatBN7.2
Rnor_6.0558,371,797 - 58,372,008NCBIRnor6.0
Rnor_5.0562,897,171 - 62,897,382UniSTSRnor5.0
RGSC_v3.4559,416,537 - 59,416,748UniSTSRGSC3.4
Celera555,744,852 - 55,745,063UniSTS
Cytogenetic Map5q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 58
Low 2 41 5 5 5 12 17 37 5 5
Below cutoff 1 30 20 16 20 3 5 4 18 4 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC178457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000000141   ⟹   ENSRNOP00000000141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl557,142,632 - 57,168,497 (+)Ensembl
Rnor_6.0 Ensembl558,359,498 - 58,383,070 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098449   ⟹   ENSRNOP00000078296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl557,156,616 - 57,168,497 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120097   ⟹   ENSRNOP00000096981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl557,144,153 - 57,168,497 (+)Ensembl
RefSeq Acc Id: NM_001398835   ⟹   NP_001385764
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,916 - 61,964,325 (+)NCBI
mRatBN7.2557,144,089 - 57,168,498 (+)NCBI
RefSeq Acc Id: XM_006238121   ⟹   XP_006238183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,940,134 - 61,966,879 (+)NCBI
mRatBN7.2557,148,742 - 57,171,054 (+)NCBI
Rnor_6.0558,365,217 - 58,387,446 (+)NCBI
Rnor_5.0562,885,392 - 62,912,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238122   ⟹   XP_006238184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,261 - 61,966,879 (+)NCBI
mRatBN7.2557,143,428 - 57,171,054 (+)NCBI
Rnor_6.0558,359,747 - 58,387,446 (+)NCBI
Rnor_5.0562,885,392 - 62,912,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238123   ⟹   XP_006238185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,262 - 61,966,879 (+)NCBI
mRatBN7.2557,143,428 - 57,171,054 (+)NCBI
Rnor_6.0558,359,747 - 58,387,446 (+)NCBI
Rnor_5.0562,885,392 - 62,912,821 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593718   ⟹   XP_017449207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,940,128 - 61,966,879 (+)NCBI
mRatBN7.2557,148,738 - 57,171,054 (+)NCBI
Rnor_6.0558,365,214 - 58,387,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593719   ⟹   XP_017449208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,940,135 - 61,966,879 (+)NCBI
mRatBN7.2557,148,742 - 57,171,054 (+)NCBI
Rnor_6.0558,365,215 - 58,387,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593720   ⟹   XP_017449209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,262 - 61,966,879 (+)NCBI
mRatBN7.2557,143,429 - 57,171,054 (+)NCBI
Rnor_6.0558,359,744 - 58,387,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110972   ⟹   XP_038966900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,931 - 61,966,879 (+)NCBI
mRatBN7.2557,144,101 - 57,171,052 (+)NCBI
RefSeq Acc Id: XM_039110974   ⟹   XP_038966902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,931 - 61,966,879 (+)NCBI
mRatBN7.2557,144,103 - 57,171,052 (+)NCBI
RefSeq Acc Id: XM_039110975   ⟹   XP_038966903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,931 - 61,966,879 (+)NCBI
mRatBN7.2557,144,102 - 57,171,052 (+)NCBI
RefSeq Acc Id: XM_063288220   ⟹   XP_063144290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,261 - 61,966,879 (+)NCBI
RefSeq Acc Id: XM_063288222   ⟹   XP_063144292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,926 - 61,966,879 (+)NCBI
RefSeq Acc Id: XM_063288223   ⟹   XP_063144293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,939,262 - 61,966,879 (+)NCBI
RefSeq Acc Id: XM_063288224   ⟹   XP_063144294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,956,716 - 61,966,879 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006238184   ⟸   XM_006238122
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238185   ⟸   XM_006238123
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238183   ⟸   XM_006238121
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449209   ⟸   XM_017593720
- Peptide Label: isoform X3
- UniProtKB: D3ZB78 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449207   ⟸   XM_017593718
- Peptide Label: isoform X2
- UniProtKB: A0A292G0W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449208   ⟸   XM_017593719
- Peptide Label: isoform X3
- UniProtKB: D3ZB78 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000141   ⟸   ENSRNOT00000000141
RefSeq Acc Id: XP_038966900   ⟸   XM_039110972
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966903   ⟸   XM_039110975
- Peptide Label: isoform X3
- UniProtKB: D3ZB78 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966902   ⟸   XM_039110974
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL),   A0A292G0W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000096981   ⟸   ENSRNOT00000120097
RefSeq Acc Id: ENSRNOP00000078296   ⟸   ENSRNOT00000098449
RefSeq Acc Id: NP_001385764   ⟸   NM_001398835
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144290   ⟸   XM_063288220
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144293   ⟸   XM_063288223
- Peptide Label: isoform X3
- UniProtKB: D3ZB78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144292   ⟸   XM_063288222
- Peptide Label: isoform X3
- UniProtKB: D3ZB78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144294   ⟸   XM_063288224
- Peptide Label: isoform X4
Protein Domains
KIAA1045 RING finger

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZB78-F1-model_v2 AlphaFold D3ZB78 1-363 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559864 AgrOrtholog
BioCyc Gene G2FUF-41530 BioCyc
Ensembl Genes ENSRNOG00000000129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000141.6 UniProtKB/TrEMBL
  ENSRNOT00000098449.1 UniProtKB/TrEMBL
  ENSRNOT00000120097 ENTREZGENE
  ENSRNOT00000120097.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  KIAA1045_Zf_RING UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:500446 UniProtKB/TrEMBL
NCBI Gene 500446 ENTREZGENE
PANTHER PHD FINGER PROTEIN 24 UniProtKB/TrEMBL
  PROTEIN KINASE C-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam Zf_RING UniProtKB/TrEMBL
PhenoGen Phf24 PhenoGen
PROSITE ZF_PHD_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000129 RatGTEx
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A292G0W2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKM4_RAT UniProtKB/TrEMBL
  A0A8I6GMB9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZB78 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-11 Phf24  PHD finger protein 24  RGD1559864  similar to mKIAA1045 protein  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1559864  similar to mKIAA1045 protein   RGD1559864_predicted  similar to mKIAA1045 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559864_predicted  similar to mKIAA1045 protein (predicted)  LOC500446  similar to mKIAA1045 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500446  similar to mKIAA1045 protein      Symbol and Name status set to provisional 70820 PROVISIONAL