Vom1r35 (vomeronasal 1 receptor 35) - Rat Genome Database

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Gene: Vom1r35 (vomeronasal 1 receptor 35) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom1r35
Name: vomeronasal 1 receptor 35
RGD ID: 1359552
Description: Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1rd7; vomernasal 1 receptor Vom1r35; vomeronasal 1 receptor, 35; vomeronasal 1 receptor, D7; vomeronasal type-1 receptor 1; vomeronasal V1r-type receptor V1rd7
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8177,595,714 - 77,596,755 (-)NCBIGRCr8
mRatBN7.2168,566,865 - 68,567,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,574,855 - 68,578,099 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl168,566,953 - 68,567,903 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0172,128,355 - 72,129,269 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,128,355 - 72,129,269 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0176,407,751 - 76,408,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,309,537 - 67,310,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1167,387,647 - 67,388,562 (-)NCBI
Celera168,537,425 - 68,538,339 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r35RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r35RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR0040721600115GO_REF:0000002InterProGO_REF:0000002
Vom1r35Ratresponse to pheromone involved_inIEAUniProtKB-KW:KW-05891600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r35Ratsensory perception of chemical stimulus involved_inIEAARBA:ARBA000279521600115GO_REF:0000117UniProtGO_REF:0000117
Vom1r35Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r35Ratmembrane located_inIEAInterPro:IPR004072 and InterPro:IPR0174521600115GO_REF:0000002InterProGO_REF:0000002
Vom1r35Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r35Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r35Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Vom1r35RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Vom1r35Ratpheromone receptor activity enablesIEAInterPro:IPR0040721600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
PMID:19952141  



.

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:83
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000049179
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat

1 to 10 of 46 rows



ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
1 2 2 2 1 2 3 1 1 2


RefSeq Transcripts NM_001008919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000049179   ⟹   ENSRNOP00000045097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl168,566,953 - 68,567,903 (-)Ensembl
Rnor_6.0 Ensembl172,128,355 - 72,129,269 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113637   ⟹   ENSRNOP00000086983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl168,574,855 - 68,578,099 (-)Ensembl
RefSeq Acc Id: NM_001008919   ⟹   NP_001008919
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8177,595,714 - 77,596,755 (-)NCBI
mRatBN7.2168,566,865 - 68,567,906 (-)NCBI
Protein RefSeqs NP_001008919 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045097.4
  ENSRNOP00000086983.1
  ENSRNOP00000101376
Ensembl Acc Id: ENSRNOP00000045097   ⟸   ENSRNOT00000049179
RefSeq Acc Id: NP_001008919   ⟸   NM_001008919
- UniProtKB: A0A8I6A6F4 (UniProtKB/TrEMBL),   Q5J3H8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000086983   ⟸   ENSRNOT00000113637
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-Q5J3H8-F1-model_v2 AlphaFold Q5J3H8 1-304 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60893 BioCyc
Ensembl Genes ENSRNOG00000033755 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000062966 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000085836 ENTREZGENE
Ensembl Transcript ENSRNOT00000049179.4 UniProtKB/TrEMBL
  ENSRNOT00000113637.1 UniProtKB/TrEMBL
  ENSRNOT00000131026 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report rno:494268 UniProtKB/TrEMBL
NCBI Gene 494268 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vom1r35 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033755 RatGTEx
  ENSRNOG00000062966 RatGTEx
  ENSRNOG00000085836 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A6F4 ENTREZGENE, UniProtKB/TrEMBL
  Q5J3H8 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-06-08 Vom1r35  vomeronasal 1 receptor, 35  V1rd7  vomeronasal 1 receptor, D7  Symbol and Name updated 2325755 APPROVED
2008-03-04 V1rd7  vomeronasal 1 receptor, D7  V1rd7  vomeronasal V1r-type receptor V1rd7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 V1rd7  vomeronasal V1r-type receptor V1rd7      Symbol and Name status set to provisional 70820 PROVISIONAL