Ehbp1 (EH domain binding protein 1) - Rat Genome Database

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Gene: Ehbp1 (EH domain binding protein 1) Rattus norvegicus
Analyze
Symbol: Ehbp1
Name: EH domain binding protein 1
RGD ID: 1310604
Description: Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Orthologous to human EHBP1 (EH domain binding protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EH domain-binding protein 1; LOC305556; RGD1310604; similar to KIAA0903-like protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814100,294,585 - 100,581,764 (-)NCBIGRCr8
mRatBN7.21496,093,327 - 96,380,502 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1496,093,327 - 96,345,332 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14100,444,759 - 100,695,666 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,685,109 - 101,938,141 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01498,158,630 - 98,409,534 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,871,426 - 107,160,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,871,430 - 107,160,334 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,936,370 - 107,224,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,732,009 - 102,951,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,751,332 - 102,970,505 (-)NCBI
Celera1495,090,443 - 95,340,586 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (EXP)
butanal  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
malathion  (ISO)
mercury dichloride  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
tetraphene  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:38129132  


Genomics

Comparative Map Data
Ehbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814100,294,585 - 100,581,764 (-)NCBIGRCr8
mRatBN7.21496,093,327 - 96,380,502 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1496,093,327 - 96,345,332 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14100,444,759 - 100,695,666 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014101,685,109 - 101,938,141 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01498,158,630 - 98,409,534 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014106,871,426 - 107,160,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,871,430 - 107,160,334 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,936,370 - 107,224,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,732,009 - 102,951,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,751,332 - 102,970,505 (-)NCBI
Celera1495,090,443 - 95,340,586 (-)NCBICelera
Cytogenetic Map14q22NCBI
EHBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38262,673,878 - 63,046,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl262,673,851 - 63,046,487 (+)EnsemblGRCh38hg38GRCh38
GRCh37262,901,013 - 63,273,622 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36262,786,638 - 63,127,126 (+)NCBINCBI36Build 36hg18NCBI36
Build 34262,844,783 - 63,185,270NCBI
Celera262,745,754 - 63,118,175 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef262,639,140 - 63,012,565 (+)NCBIHuRef
CHM1_1262,831,518 - 63,203,908 (+)NCBICHM1_1
T2T-CHM13v2.0262,680,198 - 63,053,564 (+)NCBIT2T-CHM13v2.0
Ehbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,955,825 - 22,237,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,955,828 - 22,292,292 (-)EnsemblGRCm39 Ensembl
GRCm381122,005,825 - 22,287,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,005,828 - 22,342,292 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,905,831 - 22,185,841 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,905,831 - 22,185,841 (-)NCBIMGSCv36mm8
Celera1124,146,972 - 24,426,799 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.1NCBI
Ehbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,152,422 - 21,500,224 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542421,151,473 - 21,500,044 (-)NCBIChiLan1.0ChiLan1.0
EHBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21263,344,783 - 63,714,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A63,348,733 - 63,718,477 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A62,784,756 - 63,122,396 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A63,882,029 - 64,250,914 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,882,029 - 64,250,914 (+)Ensemblpanpan1.1panPan2
EHBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,480,466 - 62,825,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,366,512 - 62,825,693 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1062,368,047 - 62,713,174 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01063,487,710 - 63,832,727 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1063,368,900 - 63,833,543 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11063,170,772 - 63,515,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01063,474,075 - 63,819,010 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01063,771,019 - 64,116,207 (+)NCBIUU_Cfam_GSD_1.0
Ehbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629220,394,026 - 20,725,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364917,875,014 - 8,177,654 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364917,875,119 - 8,176,559 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,907,317 - 79,257,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,907,315 - 79,261,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,972,985 - 83,140,450 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EHBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,971,400 - 44,293,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,971,261 - 44,292,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604567,542,691 - 67,871,415 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476210,392,088 - 10,751,055 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476210,391,139 - 10,752,562 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ehbp1
2020 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:82
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000012131
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat

Markers in Region
BE116078  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,189,143 - 96,189,301 (+)MAPPERmRatBN7.2
Rnor_6.014106,967,220 - 106,967,377NCBIRnor6.0
Rnor_5.014107,031,960 - 107,032,117UniSTSRnor5.0
RGSC_v3.414102,827,034 - 102,827,191UniSTSRGSC3.4
Celera1495,185,577 - 95,185,734UniSTS
RH 3.4 Map14750.6UniSTS
Cytogenetic Map14q22UniSTS
RH140549  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,240,919 - 96,241,025 (+)MAPPERmRatBN7.2
Rnor_6.014107,019,479 - 107,019,584NCBIRnor6.0
Rnor_5.014107,084,219 - 107,084,324UniSTSRnor5.0
RGSC_v3.414102,878,706 - 102,878,811UniSTSRGSC3.4
Celera1495,237,335 - 95,237,440UniSTS
RH 3.4 Map14762.9UniSTS
Cytogenetic Map14q22UniSTS
UniSTS:471184  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21496,243,354 - 96,243,908 (+)MAPPERmRatBN7.2
Rnor_6.014107,021,914 - 107,022,467NCBIRnor6.0
Rnor_5.014107,086,654 - 107,087,207UniSTSRnor5.0
RGSC_v3.414102,881,141 - 102,881,694UniSTSRGSC3.4
Celera1495,239,770 - 95,240,323UniSTS
Cytogenetic Map14q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 40 19 12 2 12 8 9 74 24 41 10 8
Low 3 3 38 29 17 29 2 11 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012131   ⟹   ENSRNOP00000012131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1496,093,327 - 96,345,332 (-)Ensembl
Rnor_6.0 Ensembl14106,871,430 - 107,160,334 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095555   ⟹   ENSRNOP00000077506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1496,093,327 - 96,345,332 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096295   ⟹   ENSRNOP00000083406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1496,093,327 - 96,345,332 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114018   ⟹   ENSRNOP00000090221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1496,093,327 - 96,345,332 (-)Ensembl
RefSeq Acc Id: NM_001305130   ⟹   NP_001292059
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,585 - 100,546,579 (-)NCBI
mRatBN7.21496,093,327 - 96,345,332 (-)NCBI
Rnor_6.014106,871,426 - 107,125,382 (-)NCBI
Celera1495,090,443 - 95,340,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251565   ⟹   XP_006251627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,677 (-)NCBI
mRatBN7.21496,093,329 - 96,345,334 (-)NCBI
Rnor_6.014106,871,428 - 107,125,377 (-)NCBI
Rnor_5.014106,936,370 - 107,224,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251566   ⟹   XP_006251628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,574 (-)NCBI
mRatBN7.21496,093,329 - 96,345,333 (-)NCBI
Rnor_6.014106,871,428 - 107,125,377 (-)NCBI
Rnor_5.014106,936,370 - 107,224,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251567   ⟹   XP_006251629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,574 (-)NCBI
mRatBN7.21496,093,329 - 96,345,332 (-)NCBI
Rnor_6.014106,871,428 - 107,125,377 (-)NCBI
Rnor_5.014106,936,370 - 107,224,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251568   ⟹   XP_006251630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,574 (-)NCBI
mRatBN7.21496,093,329 - 96,345,334 (-)NCBI
Rnor_6.014106,871,428 - 107,125,377 (-)NCBI
Rnor_5.014106,936,370 - 107,224,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770445   ⟹   XP_008768667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
mRatBN7.21496,093,329 - 96,345,425 (-)NCBI
Rnor_6.014106,871,428 - 107,125,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599244   ⟹   XP_017454733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,581,751 (-)NCBI
mRatBN7.21496,093,329 - 96,380,502 (-)NCBI
Rnor_6.014106,871,428 - 107,160,224 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092087   ⟹   XP_038948015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,407,934 (-)NCBI
mRatBN7.21496,093,329 - 96,207,433 (-)NCBI
RefSeq Acc Id: XM_039092088   ⟹   XP_038948016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,574 (-)NCBI
mRatBN7.21496,093,329 - 96,345,331 (-)NCBI
RefSeq Acc Id: XM_063273251   ⟹   XP_063129321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
RefSeq Acc Id: XM_063273252   ⟹   XP_063129322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
RefSeq Acc Id: XM_063273253   ⟹   XP_063129323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
RefSeq Acc Id: XM_063273255   ⟹   XP_063129325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
RefSeq Acc Id: XM_063273256   ⟹   XP_063129326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,574 (-)NCBI
RefSeq Acc Id: XM_063273257   ⟹   XP_063129327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,581,750 (-)NCBI
RefSeq Acc Id: XM_063273258   ⟹   XP_063129328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,581,748 (-)NCBI
RefSeq Acc Id: XM_063273259   ⟹   XP_063129329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
RefSeq Acc Id: XM_063273260   ⟹   XP_063129330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,574 (-)NCBI
RefSeq Acc Id: XM_063273261   ⟹   XP_063129331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,546,674 (-)NCBI
RefSeq Acc Id: XM_063273262   ⟹   XP_063129332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,581,750 (-)NCBI
RefSeq Acc Id: XM_063273263   ⟹   XP_063129333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,581,764 (-)NCBI
RefSeq Acc Id: XM_063273264   ⟹   XP_063129334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,581,764 (-)NCBI
RefSeq Acc Id: XM_063273265   ⟹   XP_063129335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,294,587 - 100,416,498 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001292059 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251627 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251628 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251629 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251630 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768667 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454733 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948015 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948016 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129321 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129322 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129323 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129325 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129326 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129327 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129328 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129329 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129330 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129331 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129332 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129333 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129334 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129335 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97964 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012131
  ENSRNOP00000012131.8
  ENSRNOP00000077506
  ENSRNOP00000077506.1
  ENSRNOP00000083406
  ENSRNOP00000083406.1
  ENSRNOP00000090221
  ENSRNOP00000090221.1
Reference Protein Sequences
RefSeq Acc Id: XP_006251630   ⟸   XM_006251568
- Peptide Label: isoform X9
- UniProtKB: F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251628   ⟸   XM_006251566
- Peptide Label: isoform X3
- UniProtKB: F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251629   ⟸   XM_006251567
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AC10 (UniProtKB/TrEMBL),   F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251627   ⟸   XM_006251565
- Peptide Label: isoform X1
- UniProtKB: F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768667   ⟸   XM_008770445
- Peptide Label: isoform X1
- UniProtKB: F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001292059   ⟸   NM_001305130
- UniProtKB: F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454733   ⟸   XM_017599244
- Peptide Label: isoform X1
- UniProtKB: F1LVX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012131   ⟸   ENSRNOT00000012131
RefSeq Acc Id: XP_038948016   ⟸   XM_039092088
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZKB4 (UniProtKB/TrEMBL),   F1LVX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948015   ⟸   XM_039092087
- Peptide Label: isoform X12
RefSeq Acc Id: ENSRNOP00000077506   ⟸   ENSRNOT00000095555
RefSeq Acc Id: ENSRNOP00000090221   ⟸   ENSRNOT00000114018
RefSeq Acc Id: ENSRNOP00000083406   ⟸   ENSRNOT00000096295
RefSeq Acc Id: XP_063129334   ⟸   XM_063273264
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063129333   ⟸   XM_063273263
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZZB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129332   ⟸   XM_063273262
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063129327   ⟸   XM_063273257
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063129328   ⟸   XM_063273258
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZKB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129331   ⟸   XM_063273261
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063129329   ⟸   XM_063273259
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZKB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129323   ⟸   XM_063273253
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129325   ⟸   XM_063273255
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AC10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129322   ⟸   XM_063273252
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129321   ⟸   XM_063273251
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129330   ⟸   XM_063273260
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063129326   ⟸   XM_063273256
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129335   ⟸   XM_063273265
- Peptide Label: isoform X12
Protein Domains
bMERB   C2 NT-type   Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LVX2-F1-model_v2 AlphaFold F1LVX2 1-1205 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310604 AgrOrtholog
BioCyc Gene G2FUF-14821 BioCyc
Ensembl Genes ENSRNOG00000008917 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012131 ENTREZGENE
  ENSRNOT00000012131.8 UniProtKB/TrEMBL
  ENSRNOT00000095555.1 UniProtKB/TrEMBL
  ENSRNOT00000096295.1 UniProtKB/TrEMBL
  ENSRNOT00000114018.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  DUF3585 UniProtKB/TrEMBL
  NT-C2 UniProtKB/TrEMBL
NCBI Gene 305556 ENTREZGENE
PANTHER CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/TrEMBL
  PTHR23167:SF43 UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/TrEMBL
  NT-C2 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PhenoGen Ehbp1 PhenoGen
PROSITE BMERB UniProtKB/TrEMBL
  C2_NT UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008917 RatGTEx
SMART DUF3585 UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
UniProt A0A8I5ZKB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AC10 ENTREZGENE, UniProtKB/TrEMBL
  F1LVX2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ehbp1  EH domain binding protein 1   Ehbp1_predicted  EH domain binding protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ehbp1_predicted  EH domain binding protein 1 (predicted)  RGD1310604_predicted  similar to KIAA0903-like protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310604_predicted  similar to KIAA0903-like protein (predicted)  LOC305556_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305556_predicted  similar to KIAA0903-like protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL