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Gene: C1qtnf7 (C1q and TNF related 7) Rattus norvegicus

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Symbol:

C1qtnf7

Name:

C1q and TNF related 7

RGD ID:

1306978

Description:

Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be part of collagen trimer. Orthologous to human C1QTNF7 (C1q and TNF related 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; bromobenzene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Adig; adiponectin g; C1q and tumor necrosis factor related protein 7; complement C1q tumor necrosis factor-related protein 7; Ctrp7; LOC305423

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C1QTNF7 (C1q and TNF related 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, Treefam
Mus musculus (house mouse):	C1qtnf7 (C1q and tumor necrosis factor related protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	C1qtnf7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C1QTNF7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C1QTNF7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	C1qtnf7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	C1QTNF7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C1QTNF7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	C1qtnf7 (C1q and TNF related 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	C1QTNF7 (C1q and TNF related 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	C1qtnf7 (C1q and tumor necrosis factor related protein 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cc2d2a	Alliance	DIOPT (Ensembl Compara\|OMA\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	71,680,415 - 71,792,931 (-)	NCBI		GRCr8
mRatBN7.2	14	67,467,888 - 67,580,477 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	67,468,014 - 67,580,410 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	71,874,235 - 71,887,842 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	73,148,065 - 73,161,684 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	69,584,685 - 69,598,298 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	72,011,518 - 72,122,257 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	72,011,461 - 72,122,158 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	72,037,933 - 72,148,231 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	72,631,465 - 72,645,084 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	72,634,245 - 72,651,419 (-)	NCBI
Celera	14	66,423,554 - 66,437,173 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
C1qtnf7	Rat	1,2-dichloroethane	decreases expression	ISO	C1qtnf7 (Mus musculus)	6480464	ethylene dichloride results in decreased expression of C1QTNF7 mRNA	CTD	PMID:28960355
C1qtnf7	Rat	1,2-dimethylhydrazine	increases expression	ISO	C1qtnf7 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of C1QTNF7 mRNA	CTD	PMID:22206623
C1qtnf7	Rat	17beta-estradiol	multiple interactions	ISO	C1QTNF7 (Homo sapiens)	6480464	[Estradiol co-treated with Progesterone] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:20660070
C1qtnf7	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of C1QTNF7 mRNA	CTD	PMID:34747641
C1qtnf7	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[bisphenol S co-treated with Tretinoin] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:30951980
C1qtnf7	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	bisphenol S results in decreased methylation of C1QTNF7 gene	CTD	PMID:31601247
C1qtnf7	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	C1QTNF7 (Homo sapiens)	6480464	[bisphenol S co-treated with Fulvestrant] affects the methylation of C1QTNF7 gene	CTD	PMID:31601247
C1qtnf7	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	C1qtnf7 (Mus musculus)	6480464	bisphenol S results in increased expression of C1QTNF7 mRNA	CTD	PMID:30951980
C1qtnf7	Rat	4-hydroxyphenyl retinamide	decreases expression	ISO	C1qtnf7 (Mus musculus)	6480464	Fenretinide results in decreased expression of C1QTNF7 mRNA	CTD	PMID:28973697
C1qtnf7	Rat	aflatoxin B1	decreases methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of C1QTNF7 gene	CTD	PMID:27153756
C1qtnf7	Rat	all-trans-retinoic acid	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[bisphenol S co-treated with Tretinoin] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:30951980
C1qtnf7	Rat	arsane	affects methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	Arsenic affects the methylation of C1QTNF7 gene	CTD	PMID:25304211
C1qtnf7	Rat	arsenic atom	affects methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	Arsenic affects the methylation of C1QTNF7 gene	CTD	PMID:25304211
C1qtnf7	Rat	arsenous acid	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of C1QTNF7 mRNA	CTD	PMID:26705709
C1qtnf7	Rat	benzo[a]pyrene	decreases expression	ISO	C1qtnf7 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of C1QTNF7 mRNA	CTD	PMID:27195522
C1qtnf7	Rat	benzo[a]pyrene	increases methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of C1QTNF7 5' UTR and Benzo(a)pyrene results in increased methylation of C1QTNF7 promoter	CTD	PMID:27901495
C1qtnf7	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	Diethylhexyl Phthalate results in decreased expression of C1QTNF7 mRNA	CTD	PMID:31163220
C1qtnf7	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of C1QTNF7 mRNA	CTD	PMID:25181051 and PMID:34947998
C1qtnf7	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of C1QTNF7 mRNA	CTD	PMID:36779543
C1qtnf7	Rat	bisphenol A	decreases expression	ISO	C1qtnf7 (Mus musculus)	6480464	bisphenol A results in decreased expression of C1QTNF7 mRNA	CTD	PMID:35479511
C1qtnf7	Rat	bisphenol A	multiple interactions	ISO	C1QTNF7 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of C1QTNF7 gene	CTD	PMID:31601247
C1qtnf7	Rat	bisphenol A	affects methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	bisphenol A affects the methylation of C1QTNF7 gene	CTD	PMID:31601247
C1qtnf7	Rat	bisphenol A	increases expression	ISO	C1qtnf7 (Mus musculus)	6480464	bisphenol A results in increased expression of C1QTNF7 mRNA	CTD	PMID:30951980
C1qtnf7	Rat	bisphenol F	increases expression	ISO	C1qtnf7 (Mus musculus)	6480464	bisphenol F results in increased expression of C1QTNF7 mRNA	CTD	PMID:30951980
C1qtnf7	Rat	bromobenzene	increases expression	EXP		6480464	bromobenzene results in increased expression of C1QTNF7 mRNA	CTD	PMID:32479839
C1qtnf7	Rat	carbon nanotube	decreases expression	ISO	C1qtnf7 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681 and PMID:25620056
C1qtnf7	Rat	choline	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of C1QTNF7 mRNA	CTD	PMID:20938992
C1qtnf7	Rat	cyclosporin A	decreases methylation	ISO	C1QTNF7 (Homo sapiens)	6480464	Cyclosporine results in decreased methylation of C1QTNF7 promoter	CTD	PMID:27989131
C1qtnf7	Rat	decabromodiphenyl ether	decreases expression	EXP		6480464	decabromobiphenyl ether results in decreased expression of C1QTNF7 mRNA	CTD	PMID:23640034
C1qtnf7	Rat	diarsenic trioxide	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of C1QTNF7 mRNA	CTD	PMID:26705709
C1qtnf7	Rat	dibenz[a,h]anthracene	increases expression	ISO	C1qtnf7 (Mus musculus)	6480464	1 more ...	CTD	PMID:26377693
C1qtnf7	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of C1QTNF7 mRNA	CTD	PMID:21266533
C1qtnf7	Rat	dioxygen	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of C1QTNF7 mRNA	CTD	PMID:30529165
C1qtnf7	Rat	dioxygen	multiple interactions	EXP		6480464	[Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:33729688
C1qtnf7	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of C1QTNF7 mRNA	CTD	PMID:29391264
C1qtnf7	Rat	folic acid	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of C1QTNF7 mRNA	CTD	PMID:20938992
C1qtnf7	Rat	folic acid	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	Folic Acid results in decreased expression of C1QTNF7 mRNA	CTD	PMID:21867686
C1qtnf7	Rat	fulvestrant	multiple interactions	ISO	C1QTNF7 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of C1QTNF7 gene and [bisphenol S co-treated with Fulvestrant] affects the methylation of C1QTNF7 gene	CTD	PMID:31601247
C1qtnf7	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of C1QTNF7 mRNA	CTD	PMID:27387713
C1qtnf7	Rat	L-methionine	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of C1QTNF7 mRNA	CTD	PMID:20938992
C1qtnf7	Rat	MeIQx	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	2-amino-3 more ...	CTD	PMID:20816883
C1qtnf7	Rat	methamphetamine	decreases expression	EXP		6480464	Methamphetamine results in decreased expression of C1QTNF7 mRNA	CTD	PMID:19564919
C1qtnf7	Rat	methamphetamine	multiple interactions	EXP		6480464	[Methamphetamine co-treated with SCH 23390] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:19564919
C1qtnf7	Rat	nickel atom	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	Nickel results in decreased expression of C1QTNF7 mRNA	CTD	PMID:25583101
C1qtnf7	Rat	ozone	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of C1QTNF7 mRNA	CTD	PMID:34911549
C1qtnf7	Rat	paracetamol	affects expression	ISO	C1qtnf7 (Mus musculus)	6480464	Acetaminophen affects the expression of C1QTNF7 mRNA	CTD	PMID:17562736
C1qtnf7	Rat	pioglitazone	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[N-nitroso-tris-chloroethylurea co-treated with pioglitazone] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:27935865
C1qtnf7	Rat	poly(I:C)	multiple interactions	EXP		6480464	[Poly I-C co-treated with HU 211] results in increased expression of C1QTNF7 mRNA	CTD	PMID:26923065
C1qtnf7	Rat	progesterone	multiple interactions	ISO	C1QTNF7 (Homo sapiens)	6480464	[Estradiol co-treated with Progesterone] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:20660070
C1qtnf7	Rat	SCH 23390	decreases expression	EXP		6480464	SCH 23390 results in decreased expression of C1QTNF7 mRNA	CTD	PMID:19564919
C1qtnf7	Rat	SCH 23390	multiple interactions	EXP		6480464	[Methamphetamine co-treated with SCH 23390] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:19564919
C1qtnf7	Rat	sodium arsenite	decreases expression	ISO	C1qtnf7 (Mus musculus)	6480464	sodium arsenite results in decreased expression of C1QTNF7 mRNA	CTD	PMID:37682722
C1qtnf7	Rat	triticonazole	increases expression	EXP		6480464	triticonazole results in increased expression of C1QTNF7 mRNA	CTD	PMID:36084822
C1qtnf7	Rat	valproic acid	decreases expression	ISO	C1QTNF7 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of C1QTNF7 mRNA	CTD	PMID:23179753
C1qtnf7	Rat	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of C1QTNF7 mRNA	CTD	PMID:35594946
C1qtnf7	Rat	XL147	multiple interactions	ISO	C1qtnf7 (Mus musculus)	6480464	[N-nitroso-tris-chloroethylurea co-treated with XL147] results in decreased expression of C1QTNF7 mRNA	CTD	PMID:27935865

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
C1qtnf7	Rat	collagen trimer	part_of	IEA	UniProtKB-KW:KW-0176	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
C1qtnf7	Rat	extracellular region	located_in	IEA	UniProtKB-KW:KW-0964	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
C1qtnf7	Rat	extracellular region	located_in	IEA	UniProtKB-SubCell:SL-0243	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
C1qtnf7	Rat	extracellular space	located_in	IEA	UniProtKB:Q8BVD7 and ensembl:ENSMUSP00000113520	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
C1qtnf7	Rat	extracellular space	located_in	ISO	C1qtnf7 (Mus musculus)	1624291	PMID:15231994 and PMID:18783346	RGD	PMID:15231994 and PMID:18783346

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
C1qtnf7	Rat	identical protein binding	enables	ISO	C1qtnf7 (Mus musculus)	1624291	PR:Q8BVD7 PMID:15231994 and PMID:18783346	RGD	PMID:15231994 and PMID:18783346
C1qtnf7	Rat	identical protein binding	enables	IEA	UniProtKB:Q8BVD7 and ensembl:ENSMUSP00000113520	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
C1qtnf7	Rat	protein binding	enables	ISO	C1qtnf7 (Mus musculus)	1624291	PR:Q9D8U4 PMID:18783346	RGD	PMID:18783346

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:15231994	PMID:17716811	PMID:18783346	PMID:36514218

C1qtnf7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	71,680,415 - 71,792,931 (-)	NCBI		GRCr8
mRatBN7.2	14	67,467,888 - 67,580,477 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	67,468,014 - 67,580,410 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	71,874,235 - 71,887,842 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	73,148,065 - 73,161,684 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	69,584,685 - 69,598,298 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	72,011,518 - 72,122,257 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	72,011,461 - 72,122,158 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	72,037,933 - 72,148,231 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	72,631,465 - 72,645,084 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	72,634,245 - 72,651,419 (-)	NCBI
Celera	14	66,423,554 - 66,437,173 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

C1QTNF7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	15,339,786 - 15,446,167 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	15,339,818 - 15,446,167 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	15,341,612 - 15,447,791 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	14,950,710 - 15,056,365 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	15,017,880 - 15,123,533	NCBI
Celera	4	15,805,380 - 15,911,648 (+)	NCBI		Celera
Cytogenetic Map	4	p15.32	NCBI
HuRef	4	14,691,805 - 14,798,061 (+)	NCBI		HuRef
CHM1_1	4	15,339,512 - 15,445,736 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	15,321,456 - 15,428,083 (+)	NCBI		T2T-CHM13v2.0

C1qtnf7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	43,672,792 - 43,776,805 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	43,672,881 - 43,776,145 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	43,515,425 - 43,619,126 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	43,515,538 - 43,618,803 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	43,906,808 - 44,007,825 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	43,803,836 - 43,907,051 (+)	NCBI		MGSCv36	mm8
Celera	5	40,945,561 - 41,046,462 (+)	NCBI		Celera
Cytogenetic Map	5	B3	NCBI
cM Map	5	23.78	NCBI

C1qtnf7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955480	8,545,200 - 8,644,415 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955480	8,546,222 - 8,644,361 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1QTNF7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	15,616,131 - 15,723,062 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	15,902,131 - 15,920,980 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	9,775,042 - 9,881,585 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	15,074,494 - 15,180,694 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	15,162,534 - 15,180,694 (+)	Ensembl	panpan1.1		panPan2

C1QTNF7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	64,889,091 - 64,995,332 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	64,891,589 - 64,995,370 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	67,406,457 - 67,513,055 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	65,368,218 - 65,474,806 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	65,368,219 - 65,474,785 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	64,856,079 - 64,962,840 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	65,060,668 - 65,167,451 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	65,420,782 - 65,527,359 (-)	NCBI		UU_Cfam_GSD_1.0

C1qtnf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	58,736,624 - 58,835,326 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	12,438,315 - 12,537,246 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	12,438,495 - 12,536,954 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1QTNF7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	10,738,389 - 10,756,411 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	10,658,430 - 10,756,561 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	10,369,584 - 10,376,525 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C1QTNF7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	34,788,495 - 34,894,342 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	34,788,833 - 34,892,664 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	81,527,958 - 81,632,626 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C1qtnf7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	16,386,148 - 16,484,593 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	16,386,251 - 16,484,588 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in C1qtnf7
311 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	215
Count of miRNA genes:	152
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000064495
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

RH132774

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	67,468,176 - 67,468,364 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	72,011,745 - 72,011,932	NCBI	Rnor6.0
Rnor_5.0	14	72,038,160 - 72,038,347	UniSTS	Rnor5.0
RGSC_v3.4	14	72,631,692 - 72,631,879	UniSTS	RGSC3.4
Celera	14	66,423,781 - 66,423,968	UniSTS
Cytogenetic Map	14	q21	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	98	91	90	59	25	59	6	218	97	78	45	60	31


RefSeq Transcripts	NM_001107221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LT963073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064495 ⟹ ENSRNOP00000061160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	67,468,014 - 67,580,410 (-)	Ensembl
Rnor_6.0 Ensembl	14	72,011,461 - 72,122,158 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080604 ⟹ ENSRNOP00000069013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	72,011,518 - 72,025,137 (-)	Ensembl

RefSeq Acc Id:

NM_001107221 ⟹ NP_001100691

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	71,680,415 - 71,694,034 (-)	NCBI
mRatBN7.2	14	67,467,950 - 67,481,573 (-)	NCBI
Rnor_6.0	14	72,011,518 - 72,025,137 (-)	NCBI
Rnor_5.0	14	72,037,933 - 72,148,231 (-)	NCBI
RGSC_v3.4	14	72,631,465 - 72,645,084 (-)	RGD
Celera	14	66,423,554 - 66,437,173 (-)	RGD

Sequence:

show sequence

AGGAAAGATCCTGACTTTTGTACACTGGGAATCCTGCAGCAACCTACCCTCCCAGAGCACGAGCCCAAGATGATTGTCCTGCTCTACGTGACAAGTCTTGCCATCTGTGCAAGTGGACAACCTCGGGG
CAATCAGGCTAAGGGGGAGAGCTACTCTCCAAGGTACATCTGCAGCATCCCTGGCTTACCTGGGCCCCCAGGTCCTCCTGGAGCAAATGGCTCCCCTGGACCCCATGGTCGCATTGGCCTTCCTGGAA
GGGATGGTAGAGATGGCAGAAAAGGAGAGAAGGGGGAAAAGGGCACTGCAGGTCTAAAAGGTAAGACTGGACCCCTGGGCCTTGCTGGTGAGAAAGGAGACCAAGGAGAGACTGGGAAGAAAGGACCC
ATAGGACCAGAGGGTGAGAAAGGAGAAGTTGGTCCAGCTGGGCCTCCTGGGCCAAAGGGAGACCGAGGAGATCAAGGGGACCCAGGACTGCCTGGAGTGTGCAGATGTGGAAGCATCGTGCTCAAATC
TGCCTTTTCAGTTGGCATCACAACCAGCTACCCAGAAGAAAGACTACCCATCATATTTAACAAAGTCCTCTTCAATGAGGGGGAGCACTACAACCCTGCAACAGGGAAGTTCATTTGTGCTTTCCCAG
GGATCTATTATTTTTCTTATGATATCACGTTGGCCAATAAGCACCTAGCCATCGGGCTGGTGCACAATGGGCAGTACCGGATAAGGACCTTTGATGCCAACACAGGGAACCACGATGTGGCTTCAGGG
TCCACAGTCATCTACCTGCAGCCAGAAGATGAGGTCTGGCTGGAGATTTTCTTCAATGACCAGAATGGCCTCTTCTCAGATCCAGGCTGGGCAGACAGCTTGTTCTCCGGGTTTCTCCTCTATGTTGA
TACAGATTACCTGGATTCTATATCAGAAGACGATGAGTTGTGATCCGGACTGCAGGCCTGAATGTTGCAACATGAGTTCCACAGTGGCTTACACTCTGATCTAATCTGGAGTGCTGGAAGGTGGAGCA
AGTGATACTGGGATTCAGAACACATTTTTTTTACAGATGGCTCTGGCAGAGTTAACAAAATAAGACAAACCACCAACCAGTTGAAATCACACCAAAATGAACGGCATGCAATAACCCCAGACATGGAC
CCCCTGAAGTAAAGATCCTAAATATTTAAGCAAATTAAGATGATGTTAACAAATTTGAATGCCCTTGGCAATACAACCAGCGGGTAGTGACACTGCCTCATTAAATATTCATAAAACTCCAGTTGTGT
TTGTTATTTAGAATAGTCATAACATTTTAGTGGAATTTGTTGACAATTCTCAGGAG

hide sequence

RefSeq Acc Id:

XM_006251073 ⟹ XP_006251135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	71,680,478 - 71,792,929 (-)	NCBI
mRatBN7.2	14	67,467,888 - 67,580,472 (-)	NCBI
Rnor_6.0	14	72,011,581 - 72,122,257 (-)	NCBI
Rnor_5.0	14	72,037,933 - 72,148,231 (-)	NCBI

Sequence:

show sequence

TGAAGGCGAAATGACACAAAAACAATCCTGCTGACACCACAGGTTTAGCCCCTTTCCTAACTTG
CTGAATAAACTTTCCTAAGTGCTTCAGGAAATGATGCCCGTCAATCTCTATATACTACTTTATAAGGCCACGGGGACTCAAATCCACACAGTGCACCCAGCGATGGCTGCAGAGAGACGGAAAATCCT
CCAGATACCTGAGGCTCTTGCTTTGCGTCTGCCTCTGTCTGCGGTTTGCAGAAGAACCTTGCCCACTCCTCCTCATTCGTAACGAGTGTATATAGTAAACTCTTTGAAATGTGAGTATTATGGGAAGG
ATCGCAGTTGCTTTAAATTATAGAAGTTGGCAAGTGCCTGGGAGAAGGAGTGGGAGGTTGTTTAAACTGAGAAAGACGGTTGCAGAACTTCGTACGACAGCATGAGCTCGCGCTCCACACACATCCTT
CACTTTTCTTCAAGACACTTCTCTGCATTGTTGTGGAGCAGCTTGGGTAATAAACATATTTCTGCTCTGAATAATTTTTAATGGTTTCTAAATTCATGGGAGAACCAAAGCAAGGAAGTCTGATGTTT
GGGGAGGACGTCTGAACCCAGCAATGCCCAGGAAAGAGCCCAAGATGATTGTCCTGCTCTACGTGACAAGTCTTGCCATCTGTGCAAGTGGACAACCTCGGGGCAATCAGGCTAAGGGGGAGAGCTAC
TCTCCAAGGTACATCTGCAGCATCCCTGGCTTACCTGGGCCCCCAGGTCCTCCTGGAGCAAATGGCTCCCCTGGACCCCATGGTCGCATTGGCCTTCCTGGAAGGGATGGTAGAGATGGCAGAAAAGG
AGAGAAGGGGGAAAAGGGCACTGCAGGTCTAAAAGGTAAGACTGGACCCCTGGGCCTTGCTGGTGAGAAAGGAGACCAAGGAGAGACTGGGAAGAAAGGACCCATAGGACCAGAGGGTGAGAAAGGAG
AAGTTGGTCCAGCTGGGCCTCCTGGGCCAAAGGGAGACCGAGGAGATCAAGGGGACCCAGGACTGCCTGGAGTGTGCAGATGTGGAAGCATCGTGCTCAAATCTGCCTTTTCAGTTGGCATCACAACC
AGCTACCCAGAAGAAAGACTACCCATCATATTTAACAAAGTCCTCTTCAATGAGGGGGAGCACTACAACCCTGCAACAGGGAAGTTCATTTGTGCTTTCCCAGGGATCTATTATTTTTCTTATGATAT
CACGTTGGCCAATAAGCACCTAGCCATCGGGCTGGTGCACAATGGGCAGTACCGGATAAGGACCTTTGATGCCAACACAGGGAACCACGATGTGGCTTCAGGGTCCACAGTCATCTACCTGCAGCCAG
AAGATGAGGTCTGGCTGGAGATTTTCTTCAATGACCAGAATGGCCTCTTCTCAGATCCAGGCTGGGCAGACAGCTTGTTCTCCGGGTTTCTCCTCTATGTTGATACAGATTACCTGGATTCTATATCA
GAAGACGATGAGTTGTGATCCGGACTGCAGGCCTGAATGTTGCAACATGAGTTCCACAGTGGCTTACACTCTGATCTAATCTGGAGTGCTGGAAGGTGGAGCAAGTGATACTGGGATTCAGAACACAT
TTTTTTTACAGATGGCTCTGGCAGAGTTAACAAAATAAGACAAACCACCAACCAGTTGAAATCACACCAAAATGAACGGCATGCAATAACCCCAGACATGGACCCCCTGAAGTAAAGATCCTAAATAT
TTAAGCAAATTAAGATGATGTTAACAAATTTGAATGCCCTTGGCAATACAACCAGCGGGTAGTGACACTGCCTCATTAAATATTCATAAAACTCCA

hide sequence

RefSeq Acc Id:

XM_006251075 ⟹ XP_006251137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	71,680,478 - 71,688,520 (-)	NCBI
mRatBN7.2	14	67,467,888 - 67,476,503 (-)	NCBI
Rnor_6.0	14	72,011,581 - 72,020,422 (-)	NCBI
Rnor_5.0	14	72,037,933 - 72,148,231 (-)	NCBI

Sequence:

show sequence

ATATATATAAATTAGTGTTGTCTATACATACATGAGTTTAGGCTGACCACTAGGGCTTAGACAACTTACCATGGGGCTTGTCTCCAAAAAAAAAAAAAGACTCTGTCTCCCTCAGCAGCCATAGACTG
CCTGTAGCTTCTCAACCAAGGAGGGGAGGGAAGCTGTGAGTTTTGCCCCTATTCACATTGGAATGTTGACTGGTGTGCTCTTGTGCAGGTCTTGGCAGGCAGCTATAGATGTTGAGAGTCTGTGGGAA
CAACATCCCTGCCTTGCCAGCAGAAACTCTTTTGTAGTAGTCCTCTGCCTTGAAGTTCCCTGAGGAGCTCATGTTGCTATCAGAACCATAGCCTTAGGCCCATTTGAACACTAGGATCATTTGCTTGA
GGGTTGGTATTTGCCCTGCTGGAGGTATGATTTAACATGAGGGTTCCAATGTTAGAAGTTTGGTCTCACTGTGATCTTTGTGAGAGGCAATGTGAGCTTTAAGGAACCGGCCCCAGAGCAAAGTTACA
TAATAGGCACTCTCCATTGTTCTAGCTTCCAGTAGGCCTAGTCCTCCTGCCTCGATGTCATACACAACGCTGTGATGCAGTCAAGGCTTTTGGAGAGTCTGGGCCACAGCATTTTCAGTCTCCAGATT
TTTCAGCCTCCAGACTGTTAACTAAATACACCTCTTTCCTTTCTGAACCCCTTGCCTCAGGTGTTTCATTATAGTAGCAGAACACAGATTGATATAATATTGTATGGCAGATCCAGTACACAAAACAT
GACAAAAGTGTTTTTATCCTTTCATGGGAGAGGAGTCTAGTAACACTGAATACATGATTTTAGCTAATTTTTTATGATGATGATAAGATTTCTAAGACCTGAAATGATTCTAAAATCTCACATACATT
CCTGAGCTGGGGCAAACTTCTGGGTATAATTCCAAGATGTTACAATCTTTGCATGAGCACCATAAAAAGTGGTATGGTGTACGGTATACCTTTTAAATTTTCTGAGATGTCCATCAAAACTAACATTT
GATCACTCTTCCCTCTTTGTATTATTATTCCCCTTAAGAGAATGTTGTCCAGATCAAGCACTATGAAGATTCTATATGATAACCCAGGTCTAGCTCTCCAGAAGCTCATTGACACAACCCAAAGAAAC
ACTGTGTGAATTCTCCCACTGAAGAAACTGCTCAGCCCTCCGGATGACATAGCCTGAAAATTCAGATCTCCCAAGTTTATGCTGCCTACATGCCAGGATTGTCATGCTAATATATCATTTGTTGCTCT
CTGCATCCAGGCTCTGTGGAGTAAGAAGCCAAGTCCTATGAGAGCCCAAGATGATTGTCCTGCTCTACGTGACAAGTCTTGCCATCTGTGCAAGTGGACAACCTCGGGGCAATCAGGCTAAGGGGGAG
AGCTACTCTCCAAGGTACATCTGCAGCATCCCTGGCTTACCTGGGCCCCCAGGTCCTCCTGGAGCAAATGGCTCCCCTGGACCCCATGGTCGCATTGGCCTTCCTGGAAGGGATGGTAGAGATGGCAG
AAAAGGAGAGAAGGGGGAAAAGGGCACTGCAGGTCTAAAAGGTAAGACTGGACCCCTGGGCCTTGCTGGTGAGAAAGGAGACCAAGGAGAGACTGGGAAGAAAGGACCCATAGGACCAGAGGGTGAGA
AAGGAGAAGTTGGTCCAGCTGGGCCTCCTGGGCCAAAGGGAGACCGAGGAGATCAAGGGGACCCAGGACTGCCTGGAGTGTGCAGATGTGGAAGCATCGTGCTCAAATCTGCCTTTTCAGTTGGCATC
ACAACCAGCTACCCAGAAGAAAGACTACCCATCATATTTAACAAAGTCCTCTTCAATGAGGGGGAGCACTACAACCCTGCAACAGGGAAGTTCATTTGTGCTTTCCCAGGGATCTATTATTTTTCTTA
TGATATCACGTTGGCCAATAAGCACCTAGCCATCGGGCTGGTGCACAATGGGCAGTACCGGATAAGGACCTTTGATGCCAACACAGGGAACCACGATGTGGCTTCAGGGTCCACAGTCATCTACCTGC
AGCCAGAAGATGAGGTCTGGCTGGAGATTTTCTTCAATGACCAGAATGGCCTCTTCTCAGATCCAGGCTGGGCAGACAGCTTGTTCTCCGGGTTTCTCCTCTATGTTGATACAGATTACCTGGATTCT
ATATCAGAAGACGATGAGTTGTGATCCGGACTGCAGGCCTGAATGTTGCAACATGAGTTCCACAGTGGCTTACACTCTGATCTAATCTGGAGTGCTGGAAGGTGGAGCAAGTGATACTGGGATTCAGA
ACACATTTTTTTTACAGATGGCTCTGGCAGAGTTAACAAAATAAGACAAACCACCAACCAGTTGAAATCACACCAAAATGAACGGCATGCAATAACCCCAGACATGGACCCCCTGAAGTAAAGATCCT
AAATATTTAAGCAAATTAAGATGATGTTAACAAATTTGAATGCCCTTGGCAATACAACCAGCGGGTAGTGACACTGCCTCATTAAATATTCATAAAACTCCA

hide sequence

RefSeq Acc Id:

XM_039091942 ⟹ XP_038947870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	71,680,478 - 71,792,931 (-)	NCBI
mRatBN7.2	14	67,467,888 - 67,580,473 (-)	NCBI

RefSeq Acc Id:

XM_039091943 ⟹ XP_038947871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	71,680,478 - 71,792,720 (-)	NCBI
mRatBN7.2	14	67,467,888 - 67,580,477 (-)	NCBI


Protein RefSeqs	NP_001100691	(Get FASTA)	NCBI Sequence Viewer
	XP_006251135	(Get FASTA)	NCBI Sequence Viewer
	XP_006251137	(Get FASTA)	NCBI Sequence Viewer
	XP_038947870	(Get FASTA)	NCBI Sequence Viewer
	XP_038947871	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66720	(Get FASTA)	NCBI Sequence Viewer
	EDL99957	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061160
	ENSRNOP00000061160.3
GenBank Protein	SOR70291	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001100691 ⟸ NM_001107221
- Peptide Label:	precursor
- UniProtKB:	B2RYB7 (UniProtKB/TrEMBL), F1M6V5 (UniProtKB/TrEMBL), A0A3B0IP30 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIVLLYVTSLAICASGQPRGNQAKGESYSPRYICSIPGLPGPPGPPGANGSPGPHGRIGLPGRDGRDGRKGEKGEKGTAGLKGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPAGPPGPKGDRG DQGDPGLPGVCRCGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDITLANKHLAIGLVHNGQYRIRTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFNDQNG LFSDPGWADSLFSGFLLYVDTDYLDSISEDDEL hide sequence

RefSeq Acc Id:	XP_006251135 ⟸ XM_006251073
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2QC08 (UniProtKB/TrEMBL), A0A3B0IP30 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRKEPKMIVLLYVTSLAICASGQPRGNQAKGESYSPRYICSIPGLPGPPGPPGANGSPGPHGR IGLPGRDGRDGRKGEKGEKGTAGLKGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPAGPPGPKGDRGDQGDPGLPGVCRCGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKF ICAFPGIYYFSYDITLANKHLAIGLVHNGQYRIRTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFNDQNGLFSDPGWADSLFSGFLLYVDTDYLDSISEDDEL hide sequence

RefSeq Acc Id:	XP_006251137 ⟸ XM_006251075
- Peptide Label:	isoform X2
- UniProtKB:	B2RYB7 (UniProtKB/TrEMBL), F1M6V5 (UniProtKB/TrEMBL), A0A3B0IP30 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIVLLYVTSLAICASGQPRGNQAKGESYSPRYICSIPGLPGPPGPPGANGSPGPHGRIGLPGRDGRDGRKGEKGEKGTAGLKGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPAGPPGPKGDRG DQGDPGLPGVCRCGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDITLANKHLAIGLVHNGQYRIRTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFNDQNG LFSDPGWADSLFSGFLLYVDTDYLDSISEDDEL hide sequence

Ensembl Acc Id:

ENSRNOP00000069013 ⟸ ENSRNOT00000080604

Ensembl Acc Id:

ENSRNOP00000061160 ⟸ ENSRNOT00000064495

Protein Domains

C1q

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2QC08-F1-model_v2	AlphaFold	A0A0G2QC08	1-296	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699355

Promoter ID:

EPDNEW_R9880

Type:

initiation region

Name:

C1qtnf7_1

Description:

C1q and TNF related 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9881

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	72,121,846 - 72,121,906	EPDNEW

RGD ID:

13699358

Promoter ID:

EPDNEW_R9881

Type:

single initiation site

Name:

C1qtnf7_2

Description:

C1q and TNF related 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9880

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	72,122,106 - 72,122,166	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-15504	BioCyc
Ensembl Genes	ENSRNOG00000005094	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064495	ENTREZGENE
	ENSRNOT00000064495.4	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7932439	IMAGE-MGC_LOAD
InterPro	C1q	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Collagen/C1q_domain	UniProtKB/TrEMBL
	Tumour_necrosis_fac-like	UniProtKB/TrEMBL
KEGG Report	rno:305423	UniProtKB/TrEMBL
MGC_CLONE	MGC:188432	IMAGE-MGC_LOAD
NCBI Gene	305423	ENTREZGENE
PANTHER	C1Q DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	COMPLEMENT C1Q TUMOR NECROSIS FACTOR-RELATED PROTEIN 7	UniProtKB/TrEMBL
	EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER	UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
PhenoGen	C1qtnf7	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005094	RatGTEx
SMART	C1Q	UniProtKB/TrEMBL
Superfamily-SCOP	TNF_like	UniProtKB/TrEMBL
UniProt	A0A0G2QC08	ENTREZGENE, UniProtKB/TrEMBL
	A0A3B0IP30	ENTREZGENE, UniProtKB/TrEMBL
	B2RYB7	ENTREZGENE, UniProtKB/TrEMBL
	F1M6V5	ENTREZGENE
UniProt Secondary	F1M6V5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-09	C1qtnf7	C1q and TNF related 7	C1qtnf7	C1q and tumor necrosis factor related protein 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	C1qtnf7	C1q and tumor necrosis factor related protein 7	C1qtnf7_predicted	C1q and tumor necrosis factor related protein 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	C1qtnf7_predicted	C1q and tumor necrosis factor related protein 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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