Symbol:
Colgalt2
Name:
collagen beta(1-O)galactosyltransferase 2
RGD ID:
1304702
Description:
Predicted to enable procollagen galactosyltransferase activity. Orthologous to human COLGALT2 (collagen beta(1-O)galactosyltransferase 2); PARTICIPATES IN lysine degradation pathway; O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; atrazine; bisphenol A.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
Glt25d2; glycosyltransferase 25 domain containing 2; LOC289081; procollagen galactosyltransferase 2; RGD1304702; similar to chromosome 1 open reading frame 17
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 13 67,073,551 - 67,178,194 (+) NCBI GRCr8 mRatBN7.2 13 64,523,641 - 64,628,295 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 64,523,658 - 64,627,549 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 13 69,797,558 - 69,902,916 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 13 69,797,880 - 69,901,170 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 13 74,769,669 - 74,874,907 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 13 67,354,323 - 67,459,514 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 13 67,368,594 - 67,473,670 (+) NCBI Celera 13 64,435,489 - 64,540,128 (+) NCBI Celera Cytogenetic Map 13 q21 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Colgalt2 Rat 17beta-estradiol decreases expression ISO RGD:1552303 6480464 Estradiol results in decreased expression of COLGALT2 mRNA CTD PMID:39298647 Colgalt2 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO RGD:1602008 6480464 Tetrachlorodibenzodioxin results in decreased expression of COLGALT2 mRNA CTD PMID:20106945|PMID:21632981 Colgalt2 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO RGD:1552303 6480464 Tetrachlorodibenzodioxin results in decreased expression of COLGALT2 mRNA CTD PMID:28213091 Colgalt2 Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO RGD:1552303 6480464 Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to COLGALT2 gene] CTD PMID:28213091 Colgalt2 Rat 2,3,7,8-Tetrachlorodibenzofuran decreases expression EXP 6480464 2,3,7,8-tetrachlorodibenzofuran results in decreased expression of COLGALT2 mRNA CTD PMID:32109520 Colgalt2 Rat 3-isobutyl-1-methyl-7H-xanthine multiple interactions ISO RGD:1602008 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ... CTD PMID:28628672 Colgalt2 Rat 4,4'-sulfonyldiphenol decreases methylation ISO RGD:1602008 6480464 bisphenol S results in decreased methylation of COLGALT2 gene CTD PMID:31601247 Colgalt2 Rat 4,4'-sulfonyldiphenol multiple interactions ISO RGD:1602008 6480464 [bisphenol S co-treated with Fulvestrant] results in increased methylation of COLGALT2 gene CTD PMID:31601247 Colgalt2 Rat aflatoxin B1 decreases methylation ISO RGD:1602008 6480464 Aflatoxin B1 results in decreased methylation of COLGALT2 gene CTD PMID:27153756 Colgalt2 Rat all-trans-retinoic acid decreases expression ISO RGD:1602008 6480464 Tretinoin results in decreased expression of COLGALT2 mRNA CTD PMID:21934132 Colgalt2 Rat arsane affects methylation ISO RGD:1602008 6480464 Arsenic affects the methylation of COLGALT2 gene CTD PMID:25304211 Colgalt2 Rat arsenic atom affects methylation ISO RGD:1602008 6480464 Arsenic affects the methylation of COLGALT2 gene CTD PMID:25304211 Colgalt2 Rat asbestos affects methylation ISO RGD:1602008 6480464 Asbestos affects the methylation of COLGALT2 gene CTD PMID:28722770 Colgalt2 Rat atrazine affects methylation EXP 6480464 Atrazine affects the methylation of COLGALT2 gene CTD PMID:35440735 Colgalt2 Rat belinostat decreases expression ISO RGD:1602008 6480464 belinostat results in decreased expression of COLGALT2 mRNA CTD PMID:26272509 Colgalt2 Rat belinostat multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Colgalt2 Rat benzo[a]pyrene decreases expression ISO RGD:1552303 6480464 Benzo(a)pyrene results in decreased expression of COLGALT2 mRNA CTD PMID:22228805 Colgalt2 Rat benzo[a]pyrene increases expression ISO RGD:1552303 6480464 Benzo(a)pyrene results in increased expression of COLGALT2 mRNA CTD PMID:32417428 Colgalt2 Rat benzo[a]pyrene decreases methylation ISO RGD:1602008 6480464 Benzo(a)pyrene results in decreased methylation of COLGALT2 promoter CTD PMID:27901495 Colgalt2 Rat benzo[a]pyrene increases methylation ISO RGD:1602008 6480464 Benzo(a)pyrene results in increased methylation of COLGALT2 5' UTR; Benzo(a)pyrene results in increased methylation of more ... CTD PMID:27901495 Colgalt2 Rat benzo[a]pyrene decreases expression ISO RGD:1602008 6480464 Benzo(a)pyrene results in decreased expression of COLGALT2 mRNA CTD PMID:20106945|PMID:21632981 Colgalt2 Rat beta-lapachone decreases expression ISO RGD:1602008 6480464 beta-lapachone results in decreased expression of COLGALT2 mRNA CTD PMID:38218311 Colgalt2 Rat bis(2-ethylhexyl) phthalate decreases expression ISO RGD:1602008 6480464 Diethylhexyl Phthalate results in decreased expression of COLGALT2 mRNA CTD PMID:31163220 Colgalt2 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of COLGALT2 mRNA CTD PMID:25181051 Colgalt2 Rat bisphenol A multiple interactions ISO RGD:1602008 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ... CTD PMID:28628672 Colgalt2 Rat bisphenol F multiple interactions ISO RGD:1602008 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 Colgalt2 Rat bisphenol F increases expression ISO RGD:1552303 6480464 bisphenol F results in increased expression of COLGALT2 mRNA CTD PMID:30951980 Colgalt2 Rat cadmium dichloride increases expression ISO RGD:1602008 6480464 Cadmium Chloride results in increased expression of COLGALT2 mRNA CTD PMID:38568856 Colgalt2 Rat carbamazepine affects expression ISO RGD:1602008 6480464 Carbamazepine affects the expression of COLGALT2 mRNA CTD PMID:25979313 Colgalt2 Rat carbon nanotube decreases expression ISO RGD:1552303 6480464 Nanotubes, Carbon analog results in decreased expression of COLGALT2 mRNA; Nanotubes, Carbon results in decreased more ... CTD PMID:25554681 Colgalt2 Rat CGP 52608 multiple interactions ISO RGD:1602008 6480464 CGP 52608 promotes the reaction [RORA protein binds to COLGALT2 gene] CTD PMID:28238834 Colgalt2 Rat chromium(6+) multiple interactions ISO RGD:1602008 6480464 [zinc chromate results in increased abundance of chromium hexavalent ion] which results in decreased expression more ... CTD PMID:38479592 Colgalt2 Rat copper(II) sulfate increases expression ISO RGD:1602008 6480464 Copper Sulfate results in increased expression of COLGALT2 mRNA CTD PMID:19549813 Colgalt2 Rat dexamethasone multiple interactions ISO RGD:1602008 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ... CTD PMID:28628672 Colgalt2 Rat dioxygen multiple interactions ISO RGD:1552303 6480464 [NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of COLGALT2 mRNA CTD PMID:30529165 Colgalt2 Rat dorsomorphin multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Colgalt2 Rat entinostat multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Colgalt2 Rat entinostat decreases expression ISO RGD:1602008 6480464 entinostat results in decreased expression of COLGALT2 mRNA CTD PMID:26272509 Colgalt2 Rat fulvestrant multiple interactions ISO RGD:1602008 6480464 [bisphenol S co-treated with Fulvestrant] results in increased methylation of COLGALT2 gene CTD PMID:31601247 Colgalt2 Rat indometacin multiple interactions ISO RGD:1602008 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ... CTD PMID:28628672 Colgalt2 Rat lead(0) affects expression ISO RGD:1602008 6480464 Lead affects the expression of COLGALT2 mRNA CTD PMID:28903495 Colgalt2 Rat mercury dibromide decreases expression ISO RGD:1602008 6480464 mercuric bromide results in decreased expression of COLGALT2 mRNA CTD PMID:26272509 Colgalt2 Rat mercury dibromide multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Colgalt2 Rat N-methyl-4-phenylpyridinium increases expression ISO RGD:1602008 6480464 1-Methyl-4-phenylpyridinium results in increased expression of COLGALT2 mRNA CTD PMID:24810058 Colgalt2 Rat ozone multiple interactions ISO RGD:1552303 6480464 [Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased more ... CTD PMID:34911549 Colgalt2 Rat p-chloromercuribenzoic acid decreases expression ISO RGD:1602008 6480464 p-Chloromercuribenzoic Acid results in decreased expression of COLGALT2 mRNA CTD PMID:26272509 Colgalt2 Rat p-chloromercuribenzoic acid multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Colgalt2 Rat panobinostat decreases expression ISO RGD:1602008 6480464 panobinostat results in decreased expression of COLGALT2 mRNA CTD PMID:26272509 Colgalt2 Rat panobinostat multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Colgalt2 Rat paracetamol increases expression ISO RGD:1602008 6480464 Acetaminophen results in increased expression of COLGALT2 mRNA CTD PMID:29067470 Colgalt2 Rat perfluorohexanesulfonic acid increases expression ISO RGD:1552303 6480464 perfluorohexanesulfonic acid results in increased expression of COLGALT2 mRNA CTD PMID:37995155 Colgalt2 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO RGD:1552303 6480464 [perfluorooctane sulfonic acid co-treated with Pectins] results in increased expression of COLGALT2 mRNA CTD PMID:36331819 Colgalt2 Rat phenobarbital affects expression ISO RGD:1552303 6480464 Phenobarbital affects the expression of COLGALT2 mRNA CTD PMID:23091169 Colgalt2 Rat pregnenolone 16alpha-carbonitrile increases expression ISO RGD:1552303 6480464 Pregnenolone Carbonitrile results in increased expression of COLGALT2 mRNA CTD PMID:22698814|PMID:28903501 Colgalt2 Rat SB 431542 multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Colgalt2 Rat sodium fluoride decreases expression EXP 6480464 Sodium Fluoride results in decreased expression of COLGALT2 mRNA CTD PMID:27257137 Colgalt2 Rat sunitinib increases expression ISO RGD:1602008 6480464 Sunitinib results in increased expression of COLGALT2 mRNA CTD PMID:31533062 Colgalt2 Rat T-2 toxin decreases expression ISO RGD:1602008 6480464 T-2 Toxin results in decreased expression of COLGALT2 mRNA CTD PMID:34581912 Colgalt2 Rat titanium dioxide decreases expression ISO RGD:1552303 6480464 titanium dioxide results in decreased expression of COLGALT2 mRNA CTD PMID:23557971|PMID:29264374 Colgalt2 Rat titanium dioxide increases methylation ISO RGD:1552303 6480464 titanium dioxide results in increased methylation of COLGALT2 gene CTD PMID:35295148 Colgalt2 Rat titanium dioxide decreases methylation ISO RGD:1552303 6480464 titanium dioxide results in decreased methylation of COLGALT2 gene CTD PMID:35295148 Colgalt2 Rat trichloroethene decreases expression EXP 6480464 Trichloroethylene results in decreased expression of COLGALT2 mRNA CTD PMID:33387578 Colgalt2 Rat trichostatin A decreases expression ISO RGD:1602008 6480464 trichostatin A results in decreased expression of COLGALT2 mRNA CTD PMID:24935251 Colgalt2 Rat triclosan decreases expression ISO RGD:1602008 6480464 Triclosan results in decreased expression of COLGALT2 mRNA CTD PMID:30510588 Colgalt2 Rat trimellitic anhydride decreases expression ISO RGD:1552303 6480464 trimellitic anhydride results in decreased expression of COLGALT2 mRNA CTD PMID:19042947 Colgalt2 Rat triphenyl phosphate affects expression ISO RGD:1602008 6480464 triphenyl phosphate affects the expression of COLGALT2 mRNA CTD PMID:37042841 Colgalt2 Rat triptonide increases expression ISO RGD:1552303 6480464 triptonide results in increased expression of COLGALT2 mRNA CTD PMID:33045310 Colgalt2 Rat tris(2-butoxyethyl) phosphate affects expression ISO RGD:1602008 6480464 tris(2-butoxyethyl) phosphate affects the expression of COLGALT2 mRNA CTD PMID:29024780 Colgalt2 Rat tunicamycin increases expression ISO RGD:1602008 6480464 Tunicamycin results in increased expression of COLGALT2 mRNA CTD PMID:29453283 Colgalt2 Rat valproic acid affects expression ISO RGD:1602008 6480464 Valproic Acid affects the expression of COLGALT2 mRNA CTD PMID:25979313 Colgalt2 Rat valproic acid decreases expression ISO RGD:1602008 6480464 Valproic Acid results in decreased expression of COLGALT2 mRNA CTD PMID:23179753|PMID:24383497|PMID:26272509 Colgalt2 Rat valproic acid multiple interactions ISO RGD:1602008 6480464 [NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Colgalt2 Rat vitamin E increases expression ISO RGD:1602008 6480464 Vitamin E results in increased expression of COLGALT2 mRNA CTD PMID:19244175
Imported Annotations - KEGG (archival)
Colgalt2 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 13 67,073,551 - 67,178,194 (+) NCBI GRCr8 mRatBN7.2 13 64,523,641 - 64,628,295 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 64,523,658 - 64,627,549 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 13 69,797,558 - 69,902,916 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 13 69,797,880 - 69,901,170 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 13 74,769,669 - 74,874,907 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 13 67,354,323 - 67,459,514 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 13 67,368,594 - 67,473,670 (+) NCBI Celera 13 64,435,489 - 64,540,128 (+) NCBI Celera Cytogenetic Map 13 q21 NCBI
COLGALT2 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 183,929,662 - 184,037,728 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 183,929,854 - 184,037,729 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 183,898,796 - 184,006,862 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 182,171,589 - 182,273,486 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 1 157,015,884 - 157,117,798 (-) NCBI Celera Cytogenetic Map 1 q25.3 NCBI HuRef 1 155,140,707 - 155,242,623 (-) NCBI HuRef CHM1_1 1 185,327,635 - 185,429,520 (-) NCBI CHM1_1 T2T-CHM13v2.0 1 183,289,012 - 183,400,897 (-) NCBI T2T-CHM13v2.0
Colgalt2 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 1 152,275,485 - 152,386,942 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 1 152,275,581 - 152,386,446 (+) Ensembl GRCm39 Ensembl GRCm38 1 152,399,805 - 152,510,695 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 1 152,399,830 - 152,510,695 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 1 154,246,997 - 154,357,825 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 1 154,162,139 - 154,272,913 (+) NCBI MGSCv36 mm8 Celera 1 154,823,094 - 154,930,941 (+) NCBI Celera Cytogenetic Map 1 G2 NCBI cM Map 1 64.77 NCBI
Colgalt2 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955406 22,674,692 - 22,775,079 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955406 22,674,692 - 22,775,079 (-) NCBI ChiLan1.0 ChiLan1.0
COLGALT2 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 65,681,357 - 65,790,520 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 65,364,526 - 65,465,417 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 159,458,317 - 159,566,856 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 163,615,787 - 163,722,859 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 163,621,898 - 163,727,151 (-) Ensembl panpan1.1 panPan2
COLGALT2 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 7 17,242,951 - 17,342,562 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 7 17,245,555 - 17,343,067 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 7 16,828,930 - 16,944,454 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 7 16,975,757 - 17,091,912 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 7 16,943,746 - 17,078,092 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 7 16,883,772 - 16,999,299 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 7 16,992,419 - 17,108,055 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 7 17,123,409 - 17,239,005 (-) NCBI UU_Cfam_GSD_1.0
Colgalt2 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409344 88,078,880 - 88,172,792 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936481 5,925,629 - 6,019,835 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936481 5,925,635 - 6,019,541 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
COLGALT2 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 9 125,148,753 - 125,291,057 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 9 125,149,806 - 125,291,092 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 9 137,479,988 - 137,611,367 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
COLGALT2 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 25 45,318,249 - 45,435,939 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 25 45,331,893 - 45,434,429 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666055 46,549,857 - 46,653,676 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Colgalt2
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Predicted Target Of
Count of predictions: 204 Count of miRNA genes: 158 Interacting mature miRNAs: 180 Transcripts: ENSRNOT00000030109 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1298066 Bp159 Blood pressure QTL 159 0.004 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 13 46088046 91088046 Rat 10755495 Bp387 Blood pressure QTL 387 3.78 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 13 34663461 87525369 Rat 1354655 Bp241 Blood pressure QTL 241 3.9 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 13 56056920 101056920 Rat 70220 Bp55 Blood pressure QTL 55 5.75 arterial blood pressure trait (VT:2000000) blood pressure measurement (CMO:0000003) 13 37374509 82374509 Rat 71119 Thym2 Thymus enlargement QTL 2 3.8 thymus mass (VT:0004954) thymus weight to body weight ratio (CMO:0000612) 13 46197976 84753113 Rat 61391 Bp5 Blood pressure QTL 5 5.6 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 13 22301875 67301875 Rat 4889861 Pur29 Proteinuria QTL 29 13.8 0.005 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 13 37415584 80753406 Rat 12879441 Bp396 Blood pressure QTL 396 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 13 45699983 90699983 Rat 619615 Bp80 Blood pressure QTL 80 0.0354 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 13 39754544 84754544 Rat 2303028 Bp329 Blood pressure QTL 329 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 13 58497872 73485113 Rat 1581570 Eae17 Experimental allergic encephalomyelitis QTL 17 4.1 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) 13 8897350 101631289 Rat 70170 Eae14 Experimental allergic encephalomyelitis QTL 14 0.0024 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) 13 23203448 68203448 Rat 61340 Bp25 Blood pressure QTL 25 4.2 0.004 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 13 34535218 79535218 Rat 1581573 Uae36 Urinary albumin excretion QTL 36 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 13 5994833 77046787 Rat 1549897 Stresp12 Stress response QTL 12 3.35 stress-related behavior trait (VT:0010451) number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960) 13 38433408 83433408 Rat 724564 Uae11 Urinary albumin excretion QTL 11 5.7 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 13 59492522 77046890 Rat 7207885 Glom27 Glomerulus QTL 27 3.9 kidney glomerulus integrity trait (VT:0010546) kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139) 13 20605871 101339738 Rat 738026 Lnnr5 Liver neoplastic nodule remodeling QTL 5 3.29 liver integrity trait (VT:0010547) liver remodeling tumorous lesion number (CMO:0001461) 13 59874408 85581182 Rat 1558644 Cm45 Cardiac mass QTL 45 3.6 0.002 heart mass (VT:0007028) heart wet weight (CMO:0000069) 13 23692969 68692969 Rat 70181 BpQTLcluster11 Blood pressure QTL cluster 11 6.922 arterial blood pressure trait (VT:2000000) absolute change in mean arterial blood pressure (CMO:0000533) 13 31241331 93395974 Rat 61349 Bp31 Blood pressure QTL 31 5.75 arterial blood pressure trait (VT:2000000) blood pressure measurement (CMO:0000003) 13 37374509 82374509 Rat 2303563 Bw89 Body weight QTL 89 6 body mass (VT:0001259) body weight (CMO:0000012) 13 32284471 77284471 Rat 1354621 Rf47 Renal function QTL 47 3.7 kidney renin amount (VT:0010559) kidney renin level (CMO:0002166) 13 30395351 101056920 Rat 1581554 Pur11 Proteinuria QTL 11 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 13 5994833 77046787 Rat 12879477 Bp401 Blood pressure QTL 401 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 13 37262092 82262092 Rat 1331750 Bp220 Blood pressure QTL 220 2.98 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 13 37415584 82415584 Rat 6893338 Cm76 Cardiac mass QTL 76 0 0.99 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 13 23692969 68692969 Rat 1641901 Alcrsp6 Alcohol response QTL 6 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 13 52362171 97362171 Rat 12879475 Bp400 Blood pressure QTL 400 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 13 61825626 106807694 Rat 1354666 Bp244 Blood pressure QTL 244 4.9 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 13 1 101056920 Rat
D13Rat99
Rat Assembly Chr Position (strand) Source JBrowse GRCr8 13 67,121,362 - 67,121,570 (+) Marker Load Pipeline mRatBN7.2 13 64,571,449 - 64,571,657 (+) MAPPER mRatBN7.2 Rnor_6.0 13 69,845,399 - 69,845,606 NCBI Rnor6.0 Rnor_5.0 13 74,817,483 - 74,817,690 UniSTS Rnor5.0 RGSC_v3.4 13 67,402,725 - 67,403,056 RGD RGSC3.4 RGSC_v3.4 13 67,402,808 - 67,403,015 UniSTS RGSC3.4 RGSC_v3.1 13 67,416,888 - 67,417,095 RGD Celera 13 64,483,345 - 64,483,552 UniSTS RH 3.4 Map 13 303.7 UniSTS RH 3.4 Map 13 303.7 RGD RH 2.0 Map 13 399.9 RGD SHRSP x BN Map 13 23.7598 RGD Cytogenetic Map 13 q21 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000030109 ⟹ ENSRNOP00000034843
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 13 64,523,658 - 64,627,549 (+) Ensembl Rnor_6.0 Ensembl 13 69,797,880 - 69,901,170 (+) Ensembl
RefSeq Acc Id:
NM_001427297 ⟹ NP_001414226
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 13 67,073,551 - 67,178,194 (+) NCBI
Ensembl Acc Id:
ENSRNOP00000034843 ⟸ ENSRNOT00000030109
RefSeq Acc Id:
NP_001414226 ⟸ NM_001427297
- Peptide Label:
precursor
- UniProtKB:
A6ICT5 (UniProtKB/TrEMBL), D3Z9Z7 (UniProtKB/TrEMBL)
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2013-03-20
Colgalt2
collagen beta(1-O)galactosyltransferase 2
Glt25d2
glycosyltransferase 25 domain containing 2
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2008-04-30
Glt25d2
glycosyltransferase 25 domain containing 2
Glt25d2_predicted
glycosyltransferase 25 domain containing 2 (predicted)
'predicted' is removed
2292626 APPROVED
2006-03-30
Glt25d2_predicted
glycosyltransferase 25 domain containing 2 (predicted)
RGD1304702_predicted
similar to chromosome 1 open reading frame 17 (predicted)
Symbol and Name updated
1299863 APPROVED
2005-01-20
RGD1304702_predicted
similar to chromosome 1 open reading frame 17 (predicted)
LOC289081_predicted
Symbol and Name status set to approved
1331353 APPROVED
2005-01-12
LOC289081_predicted
similar to chromosome 1 open reading frame 17 (predicted)
Symbol and Name status set to provisional
70820 PROVISIONAL
