Symbol:
Slc39a13
Name:
solute carrier family 39 member 13
RGD ID:
1304695
Description:
Predicted to enable protein homodimerization activity and zinc ion transmembrane transporter activity. Involved in response to zinc ion. Predicted to be located in several cellular components, including Golgi membrane; endoplasmic reticulum membrane; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 3. Orthologous to human SLC39A13 (solute carrier family 39 member 13); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
LOC295928; MGC124816; solute carrier family 39 (metal ion transporter), member 13; solute carrier family 39 (zinc transporter), member 13; zinc transporter ZIP13; ZIP-13; zrt- and Irt-like protein 13
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SLC39A13 (solute carrier family 39 member 13) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Slc39a13 (solute carrier family 39 (metal ion transporter), member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Slc39a13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SLC39A13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SLC39A13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Slc39a13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SLC39A13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SLC39A13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Slc39a13 (solute carrier family 39 member 13) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
HARS2 (histidyl-tRNA synthetase 2, mitochondrial) HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
SLC39A13 (solute carrier family 39 member 13)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Slc39a13 (solute carrier family 39 (metal ion transporter), member 13)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
slc39a13 (solute carrier family 39 member 13)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
YKE4
Alliance
DIOPT (Ensembl Compara|Hieranoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB)
Drosophila melanogaster (fruit fly):
Zip99C
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
zipt-13
Alliance
DIOPT (Ensembl Compara|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
slc39a13
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 97,495,229 - 97,504,279 (-) NCBI GRCr8 mRatBN7.2 3 77,039,411 - 77,047,528 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 77,037,565 - 77,049,226 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 3 80,517,903 - 80,525,744 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 89,116,918 - 89,124,755 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 86,968,086 - 86,975,910 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 79,884,524 - 79,892,664 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 79,884,524 - 79,892,429 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 3 86,593,277 - 86,601,315 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 3 75,421,153 - 75,429,058 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 3 75,317,524 - 75,325,349 (-) NCBI Celera 3 76,248,117 - 76,256,038 (-) NCBI Celera Cytogenetic Map 3 q24 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Slc39a13 Rat 1,2-dichloroethane increases expression ISO Slc39a13 (Mus musculus) 6480464 ethylene dichloride results in increased expression of SLC39A13 mRNA CTD PMID:28960355 Slc39a13 Rat 1,2-dimethylhydrazine increases expression ISO Slc39a13 (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in increased expression of SLC39A13 mRNA CTD PMID:22206623 Slc39a13 Rat 17beta-estradiol increases expression ISO Slc39a13 (Mus musculus) 6480464 Estradiol results in increased expression of SLC39A13 mRNA CTD PMID:39298647 Slc39a13 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Slc39a13 (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of SLC39A13 mRNA CTD PMID:20702594 and PMID:21570461 Slc39a13 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of SLC39A13 mRNA CTD PMID:34747641 Slc39a13 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of SLC39A13 mRNA CTD PMID:26232522 Slc39a13 Rat 2,3,7,8-Tetrachlorodibenzofuran affects expression ISO Slc39a13 (Mus musculus) 6480464 2 more ... CTD PMID:20702594 Slc39a13 Rat 2,3,7,8-Tetrachlorodibenzofuran increases expression EXP 6480464 2 more ... CTD PMID:32109520 Slc39a13 Rat 2,6-dinitrotoluene affects expression EXP 6480464 2 and 6-dinitrotoluene affects the expression of SLC39A13 mRNA CTD PMID:21346803 Slc39a13 Rat 3,4-methylenedioxymethamphetamine increases expression ISO Slc39a13 (Mus musculus) 6480464 N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of SLC39A13 mRNA CTD PMID:26251327 Slc39a13 Rat 4,4'-sulfonyldiphenol affects methylation ISO Slc39a13 (Mus musculus) 6480464 bisphenol S affects the methylation of SLC39A13 gene CTD PMID:31683443 Slc39a13 Rat acetamide increases expression EXP 6480464 acetamide results in increased expression of SLC39A13 mRNA CTD PMID:31881176 Slc39a13 Rat acrylamide decreases expression ISO SLC39A13 (Homo sapiens) 6480464 Acrylamide results in decreased expression of SLC39A13 mRNA CTD PMID:32763439 Slc39a13 Rat aflatoxin B1 increases expression ISO Slc39a13 (Mus musculus) 6480464 Aflatoxin B1 results in increased expression of SLC39A13 mRNA CTD PMID:19770486 Slc39a13 Rat alpha-Zearalanol multiple interactions EXP 6480464 [Zeranol co-treated with perfluorooctanoic acid] results in increased expression of SLC39A13 mRNA CTD PMID:35163327 Slc39a13 Rat aristolochic acid A decreases expression ISO SLC39A13 (Homo sapiens) 6480464 aristolochic acid I results in decreased expression of SLC39A13 mRNA CTD PMID:33212167 Slc39a13 Rat arsenous acid decreases expression ISO SLC39A13 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of SLC39A13 mRNA CTD PMID:19128835 Slc39a13 Rat benzo[a]pyrene increases expression ISO Slc39a13 (Mus musculus) 6480464 Benzo(a)pyrene results in increased expression of SLC39A13 mRNA CTD PMID:20713471 Slc39a13 Rat benzo[a]pyrene decreases methylation ISO SLC39A13 (Homo sapiens) 6480464 Benzo(a)pyrene results in decreased methylation of SLC39A13 3' UTR CTD PMID:27901495 Slc39a13 Rat benzo[a]pyrene decreases expression ISO Slc39a13 (Mus musculus) 6480464 Benzo(a)pyrene results in decreased expression of SLC39A13 mRNA CTD PMID:15034205 Slc39a13 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of SLC39A13 mRNA CTD PMID:25181051 Slc39a13 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SLC39A13 mRNA CTD PMID:30816183 more ... Slc39a13 Rat calcitriol decreases expression ISO SLC39A13 (Homo sapiens) 6480464 Calcitriol results in decreased expression of SLC39A13 mRNA CTD PMID:20089671 Slc39a13 Rat chlorpyrifos increases expression ISO Slc39a13 (Mus musculus) 6480464 Chlorpyrifos results in increased expression of SLC39A13 mRNA CTD PMID:37019170 Slc39a13 Rat cobalt dichloride decreases expression ISO SLC39A13 (Homo sapiens) 6480464 cobaltous chloride results in decreased expression of SLC39A13 mRNA CTD PMID:19320972 Slc39a13 Rat cobalt dichloride decreases expression EXP 6480464 cobaltous chloride results in decreased expression of SLC39A13 mRNA CTD PMID:24386269 Slc39a13 Rat copper(II) chloride increases expression ISO SLC39A13 (Homo sapiens) 6480464 cupric chloride results in increased expression of SLC39A13 mRNA CTD PMID:38568856 Slc39a13 Rat cyclophosphamide increases expression EXP 6480464 Cyclophosphamide results in increased expression of SLC39A13 mRNA CTD PMID:27281708 Slc39a13 Rat diarsenic trioxide decreases expression ISO SLC39A13 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of SLC39A13 mRNA CTD PMID:19128835 Slc39a13 Rat Dibutyl phosphate affects expression ISO SLC39A13 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of SLC39A13 mRNA CTD PMID:37042841 Slc39a13 Rat doxorubicin affects expression ISO SLC39A13 (Homo sapiens) 6480464 Doxorubicin affects the expression of SLC39A13 mRNA CTD PMID:29803840 Slc39a13 Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of SLC39A13 mRNA CTD PMID:33387578 Slc39a13 Rat menadione affects expression ISO SLC39A13 (Homo sapiens) 6480464 Vitamin K 3 affects the expression of SLC39A13 mRNA CTD PMID:20044591 Slc39a13 Rat N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine decreases expression ISO Slc39a13 (Mus musculus) 6480464 N more ... CTD PMID:22228435 Slc39a13 Rat paracetamol affects expression ISO Slc39a13 (Mus musculus) 6480464 Acetaminophen affects the expression of SLC39A13 mRNA CTD PMID:17562736 Slc39a13 Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of SLC39A13 mRNA CTD PMID:33387578 Slc39a13 Rat pentachlorophenol increases expression ISO Slc39a13 (Mus musculus) 6480464 Pentachlorophenol results in increased expression of SLC39A13 mRNA CTD PMID:23892564 Slc39a13 Rat perfluorooctanoic acid multiple interactions EXP 6480464 [Zeranol co-treated with perfluorooctanoic acid] results in increased expression of SLC39A13 mRNA CTD PMID:35163327 Slc39a13 Rat thioacetamide decreases expression EXP 6480464 Thioacetamide results in decreased expression of SLC39A13 mRNA CTD PMID:34492290 Slc39a13 Rat titanium dioxide decreases methylation ISO Slc39a13 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of SLC39A13 promoter CTD PMID:35295148 Slc39a13 Rat titanium dioxide increases methylation ISO Slc39a13 (Mus musculus) 6480464 titanium dioxide results in increased methylation of SLC39A13 gene and titanium dioxide results in increased methylation of SLC39A13 promoter CTD PMID:35295148 Slc39a13 Rat triphenyl phosphate affects expression ISO SLC39A13 (Homo sapiens) 6480464 triphenyl phosphate affects the expression of SLC39A13 mRNA CTD PMID:37042841 Slc39a13 Rat triptonide increases expression ISO Slc39a13 (Mus musculus) 6480464 triptonide results in increased expression of SLC39A13 mRNA CTD PMID:33045310 Slc39a13 Rat zinc atom increases transport ISO SLC39A13 (Homo sapiens) 6480464 SLC39A13 protein results in increased transport of Zinc CTD PMID:18326752 Slc39a13 Rat zinc atom affects localization ISO Slc39a13 (Mus musculus) 6480464 SLC39A13 protein affects the localization of Zinc CTD PMID:18985159 Slc39a13 Rat zinc atom increases expression EXP 6480464 Zinc deficiency results in increased expression of SLC39A13 mRNA CTD PMID:20859692 Slc39a13 Rat zinc atom increases expression ISO Slc39a13 (Mus musculus) 6480464 Zinc results in increased expression of SLC39A13 mRNA CTD PMID:22228435 Slc39a13 Rat zinc atom multiple interactions ISO Slc39a13 (Mus musculus) 6480464 [[Zinc affects the localization of MTF1 protein] promotes the reaction [MTF1 protein binds to SLC39A13 promoter]] which results in increased expression of SLC39A13 mRNA more ... CTD PMID:22228435 Slc39a13 Rat zinc(0) increases transport ISO SLC39A13 (Homo sapiens) 6480464 SLC39A13 protein results in increased transport of Zinc CTD PMID:18326752 Slc39a13 Rat zinc(0) multiple interactions ISO Slc39a13 (Mus musculus) 6480464 [[Zinc affects the localization of MTF1 protein] promotes the reaction [MTF1 protein binds to SLC39A13 promoter]] which results in increased expression of SLC39A13 mRNA more ... CTD PMID:22228435 Slc39a13 Rat zinc(0) increases expression ISO Slc39a13 (Mus musculus) 6480464 Zinc results in increased expression of SLC39A13 mRNA CTD PMID:22228435 Slc39a13 Rat zinc(0) increases expression EXP 6480464 Zinc deficiency results in increased expression of SLC39A13 mRNA CTD PMID:20859692 Slc39a13 Rat zinc(0) affects localization ISO Slc39a13 (Mus musculus) 6480464 SLC39A13 protein affects the localization of Zinc CTD PMID:18985159
1,2-dichloroethane (ISO) 1,2-dimethylhydrazine (ISO) 17beta-estradiol (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2,3,7,8-Tetrachlorodibenzofuran (EXP,ISO) 2,6-dinitrotoluene (EXP) 3,4-methylenedioxymethamphetamine (ISO) 4,4'-sulfonyldiphenol (ISO) acetamide (EXP) acrylamide (ISO) aflatoxin B1 (ISO) alpha-Zearalanol (EXP) aristolochic acid A (ISO) arsenous acid (ISO) benzo[a]pyrene (ISO) bisphenol A (EXP) calcitriol (ISO) chlorpyrifos (ISO) cobalt dichloride (EXP,ISO) copper(II) chloride (ISO) cyclophosphamide (EXP) diarsenic trioxide (ISO) Dibutyl phosphate (ISO) doxorubicin (ISO) gentamycin (EXP) menadione (ISO) N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO) paracetamol (EXP,ISO) pentachlorophenol (ISO) perfluorooctanoic acid (EXP) thioacetamide (EXP) titanium dioxide (ISO) triphenyl phosphate (ISO) triptonide (ISO) zinc atom (EXP,ISO) zinc(0) (EXP,ISO)
1.
The zinc transporter SLC39A13/ZIP13 is required for connective tissue development; its involvement in BMP/TGF-beta signaling pathways.
Fukada T, etal., PLoS One. 2008;3(11):e3642. doi: 10.1371/journal.pone.0003642. Epub 2008 Nov 5.
2.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.
Spondylocheiro dysplastic form of the Ehlers-Danlos syndrome--an autosomal-recessive entity caused by mutations in the zinc transporter gene SLC39A13.
Giunta C, etal., Am J Hum Genet. 2008 Jun;82(6):1290-305. doi: 10.1016/j.ajhg.2008.05.001.
4.
Over-expression of Zip-13 mRNA in kidney and lung during dietary zinc deficiency in Wistar rats.
Guo L, etal., Mol Biol Rep. 2011 Mar;38(3):1869-74. doi: 10.1007/s11033-010-0304-y. Epub 2010 Sep 22.
5.
Rat ISS GO annotations from MGI mouse gene data--August 2006
MGD data from the GO Consortium
6.
OMIM Disease Annotation Pipeline
OMIM Disease Annotation Pipeline
7.
GOA pipeline
RGD automated data pipeline
8.
ClinVar Automated Import and Annotation Pipeline
RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
10.
Comprehensive gene review and curation
RGD comprehensive gene curation
11.
Zinc deficiency mediates alcohol-induced apoptotic cell death in the liver of rats through activating ER and mitochondrial cell death pathways.
Sun Q, etal., Am J Physiol Gastrointest Liver Physiol. 2015 May 1;308(9):G757-66. doi: 10.1152/ajpgi.00442.2014. Epub 2015 Mar 12.
Slc39a13 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 97,495,229 - 97,504,279 (-) NCBI GRCr8 mRatBN7.2 3 77,039,411 - 77,047,528 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 77,037,565 - 77,049,226 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 3 80,517,903 - 80,525,744 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 89,116,918 - 89,124,755 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 86,968,086 - 86,975,910 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 79,884,524 - 79,892,664 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 79,884,524 - 79,892,429 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 3 86,593,277 - 86,601,315 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 3 75,421,153 - 75,429,058 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 3 75,317,524 - 75,325,349 (-) NCBI Celera 3 76,248,117 - 76,256,038 (-) NCBI Celera Cytogenetic Map 3 q24 NCBI
SLC39A13 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 11 47,407,276 - 47,416,500 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 11 47,407,132 - 47,416,496 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 11 47,428,827 - 47,438,051 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 11 47,386,758 - 47,394,623 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 11 47,386,757 - 47,394,622 NCBI Celera 11 47,571,745 - 47,579,746 (+) NCBI Celera Cytogenetic Map 11 p11.2 NCBI HuRef 11 47,130,928 - 47,137,364 (+) NCBI HuRef CHM1_1 11 47,429,277 - 47,437,283 (+) NCBI CHM1_1 T2T-CHM13v2.0 11 47,566,179 - 47,575,404 (+) NCBI T2T-CHM13v2.0
Slc39a13 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 90,892,136 - 90,900,754 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 90,892,136 - 90,900,762 (-) Ensembl GRCm39 Ensembl GRCm38 2 91,061,781 - 91,070,441 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 91,061,791 - 91,070,417 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 2 90,901,948 - 90,910,378 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 2 90,862,630 - 90,871,060 (-) NCBI MGSCv36 mm8 Celera 2 92,446,265 - 92,454,697 (-) NCBI Celera Cytogenetic Map 2 E1 NCBI cM Map 2 50.44 NCBI
Slc39a13 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955422 845,678 - 852,772 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955422 845,076 - 852,772 (-) NCBI ChiLan1.0 ChiLan1.0
SLC39A13 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 9 49,611,099 - 49,619,447 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 11 49,630,934 - 49,639,235 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 11 47,356,465 - 47,364,710 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 11 47,910,552 - 47,918,014 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 11 47,910,551 - 47,918,014 (+) Ensembl panpan1.1 panPan2
SLC39A13 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 18 42,221,311 - 42,229,992 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 18 42,222,333 - 42,227,361 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 18 40,951,851 - 40,960,577 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 18 42,877,035 - 42,885,762 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 18 42,877,036 - 42,884,329 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 18 42,363,637 - 42,372,357 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 18 41,918,606 - 41,927,337 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 18 42,648,054 - 42,656,786 (-) NCBI UU_Cfam_GSD_1.0
Slc39a13 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404947 19,699,562 - 19,714,178 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936562 1,816,049 - 1,825,892 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936562 1,811,479 - 1,825,857 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SLC39A13 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 2 15,194,017 - 15,210,425 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 2 15,194,028 - 15,202,936 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 2 16,400,675 - 16,409,565 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SLC39A13 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 1 17,899,349 - 17,907,165 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 1 17,899,030 - 17,905,850 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666038 115,200,824 - 115,208,776 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Slc39a13
.
Predicted Target Of
Count of predictions: 578 Count of miRNA genes: 261 Interacting mature miRNAs: 327 Transcripts: ENSRNOT00000016191 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1300178 Hrtrt4 Heart rate QTL 4 3.74 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 3 43827364 90905114 Rat 61377 Edpm3 Estrogen-dependent pituitary mass QTL 3 7.05 0.038 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 3 53184692 89878207 Rat 2301414 Kidm37 Kidney mass QTL 37 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 3 70653097 121056321 Rat 1582238 Bw68 Body weight QTL 68 3.2 0.0064 body mass (VT:0001259) body weight (CMO:0000012) 3 53184593 115665732 Rat 1331795 Rf30 Renal function QTL 30 3.708 urine potassium amount (VT:0010539) urine potassium level (CMO:0000128) 3 39454637 89115240 Rat 1582239 Epfw1 Epididymal fat weight QTL 1 4.5 0.0006 epididymal fat pad mass (VT:0010421) epididymal fat pad weight to body weight ratio (CMO:0000658) 3 53184593 115665732 Rat 70216 Cm14 Cardiac mass QTL 14 2.1 heart mass (VT:0007028) heart wet weight (CMO:0000069) 3 31172320 163586636 Rat 1354589 Bw31 Body weight QTL 31 3.3 body mass (VT:0001259) body weight (CMO:0000012) 3 33703347 78196190 Rat 2292591 Esta4 Estrogen-induced thymic atrophy QTL 4 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 3 47233211 147415807 Rat 1358362 Srcrt2 Stress Responsive Cort QTL 2 2.78 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 3 38192233 133483320 Rat 737818 Hcar12 Hepatocarcinoma resistance QTL 12 2.6 liver integrity trait (VT:0010547) volume of individual liver tumorous lesion (CMO:0001078) 3 29463235 118376539 Rat 1582218 Bw74 Body weight QTL 74 3.9 0.0021 body mass (VT:0001259) body weight (CMO:0000012) 3 53184593 115665732 Rat 1331777 Bw24 Body weight QTL 24 3.503 body mass (VT:0001259) body weight (CMO:0000012) 3 39454637 89115240 Rat 1582221 Kidm30 Kidney mass QTL 30 3.5 0.0008 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 3 64655305 115665732 Rat 1581568 Rf53 Renal function QTL 53 urine total protein amount (VT:0000032) urine protein excretion rate to body weight ratio (CMO:0001099) 3 56395968 161299569 Rat 1582210 Bw71 Body weight QTL 71 3.3 0.0012 body mass (VT:0001259) body weight (CMO:0000012) 3 64655305 115665732 Rat 1300111 Rf12 Renal function QTL 12 3.78 renal blood flow trait (VT:2000006) absolute change in renal blood flow rate (CMO:0001168) 3 61017749 121056321 Rat 724523 Tsu1 Thymus enlargement suppressive QTL 1 3.84 thymus mass (VT:0004954) thymus weight to body weight ratio (CMO:0000612) 3 50437504 115638231 Rat 1600376 Arunc5 Aerobic running capacity QTL 5 0.21 exercise endurance trait (VT:0002332) maximum distance run on treadmill (CMO:0001406) 3 73376539 118376539 Rat 8662816 Vetf4 Vascular elastic tissue fragility QTL 4 4 renal artery integrity trait (VT:0010642) number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563) 3 59242096 157323038 Rat 1559282 Emca5 Estrogen-induced mammary cancer QTL 5 3.9 mammary gland integrity trait (VT:0010552) percentage of study population developing mammary tumors during a period of time (CMO:0000948) 3 43827364 169034231 Rat 1581503 Cm58 Cardiac mass QTL 58 2.7 0.05 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 3 43827364 121056321 Rat 2292613 Ept16 Estrogen-induced pituitary tumorigenesis QTL 16 8.3 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 3 47233430 110362260 Rat 731180 Bp152 Blood pressure QTL 152 0.03 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 53781112 91609953 Rat 738019 Anxrr10 Anxiety related response QTL 10 3.9 exploratory behavior trait (VT:0010471) number of entries into a discrete space in an experimental apparatus (CMO:0000960) 3 38517803 83517803 Rat 631200 Cm25 Cardiac mass QTL 25 4.8 0.0001 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 3 61134348 89115068 Rat 61419 Cia11 Collagen induced arthritis QTL 11 5.6 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 3 30356773 98535386 Rat 12879848 Bw181 Body weght QTL 181 0.015 body mass (VT:0001259) body weight (CMO:0000012) 3 70348525 121056321 Rat 1358905 Hrtrt17 Heart rate QTL 17 5.9 0.000014 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 3 10861912 89878372 Rat 2301971 Cm71 Cardiac mass QTL 71 4.63 heart left ventricle mass (VT:0007031) heart left ventricle weight (CMO:0000776) 3 41874578 155617519 Rat 1358885 Bp251 Blood pressure QTL 251 3.8 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 14489145 121056321 Rat 1354597 Kidm13 Kidney mass QTL 13 2.9 kidney mass (VT:0002707) right kidney wet weight (CMO:0000082) 3 41874578 104104347 Rat 2301970 Bw81 Body weight QTL 81 5.19 body mass (VT:0001259) body weight (CMO:0000012) 3 41874578 155617519 Rat 2290452 Scl56 Serum cholesterol level QTL 56 2.26 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 3 1 91609953 Rat 1354604 Bw36 Body weight QTL 36 2.9 body mass (VT:0001259) body weight (CMO:0000012) 3 33703347 104104347 Rat 631665 Bw8 Body weight QTL 8 5.5 body mass (VT:0001259) body weight (CMO:0000012) 3 50437042 119183768 Rat 1358888 Bp264 Blood pressure QTL 264 4.43 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 14489145 121056321 Rat 1358186 Ept2 Estrogen-induced pituitary tumorigenesis QTL 2 8.3 pituitary gland mass (VT:0010496) pituitary gland wet weight (CMO:0000853) 3 47233430 110362260 Rat
RH130983
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 3 77,039,514 - 77,039,701 (+) MAPPER mRatBN7.2 Rnor_6.0 3 79,884,628 - 79,884,814 NCBI Rnor6.0 Rnor_5.0 3 86,593,381 - 86,593,567 UniSTS Rnor5.0 RGSC_v3.4 3 75,421,257 - 75,421,443 UniSTS RGSC3.4 Celera 3 76,248,221 - 76,248,407 UniSTS Cytogenetic Map 3 q24 UniSTS
BE108715
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 3 77,039,049 - 77,039,218 (+) MAPPER mRatBN7.2 Rnor_6.0 3 79,884,163 - 79,884,331 NCBI Rnor6.0 Rnor_5.0 3 86,592,916 - 86,593,084 UniSTS Rnor5.0 RGSC_v3.4 3 75,420,792 - 75,420,960 UniSTS RGSC3.4 Celera 3 76,247,756 - 76,247,924 UniSTS Cytogenetic Map 3 q24 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000016191 ⟹ ENSRNOP00000016191
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 3 77,039,400 - 77,047,331 (-) Ensembl Rnor_6.0 Ensembl 3 79,884,524 - 79,892,429 (-) Ensembl
Ensembl Acc Id:
ENSRNOT00000098235 ⟹ ENSRNOP00000096044
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 3 77,037,565 - 77,047,216 (-) Ensembl
Ensembl Acc Id:
ENSRNOT00000105219 ⟹ ENSRNOP00000089562
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 3 77,039,405 - 77,049,226 (-) Ensembl
Ensembl Acc Id:
ENSRNOT00000112322 ⟹ ENSRNOP00000078410
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 3 77,039,432 - 77,046,457 (-) Ensembl
RefSeq Acc Id:
NM_001399258 ⟹ NP_001386187
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,503,044 (-) NCBI mRatBN7.2 3 77,039,411 - 77,047,226 (-) NCBI
RefSeq Acc Id:
NM_001399259 ⟹ NP_001386188
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,503,044 (-) NCBI mRatBN7.2 3 77,039,411 - 77,047,226 (-) NCBI
RefSeq Acc Id:
NR_174175
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,503,044 (-) NCBI mRatBN7.2 3 77,039,411 - 77,047,226 (-) NCBI
RefSeq Acc Id:
NR_174176
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,503,044 (-) NCBI mRatBN7.2 3 77,039,411 - 77,047,226 (-) NCBI
RefSeq Acc Id:
XM_039104519 ⟹ XP_038960447
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,499,203 (-) NCBI mRatBN7.2 3 77,039,411 - 77,043,385 (-) NCBI
RefSeq Acc Id:
XM_063283288 ⟹ XP_063139358
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,503,231 (-) NCBI
RefSeq Acc Id:
XM_063283289 ⟹ XP_063139359
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,495,229 - 97,504,279 (-) NCBI
RefSeq Acc Id:
XM_063283290 ⟹ XP_063139360
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,497,157 - 97,504,279 (-) NCBI
RefSeq Acc Id:
XM_063283291 ⟹ XP_063139361
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,497,149 - 97,504,279 (-) NCBI
RefSeq Acc Id:
XM_063283292 ⟹ XP_063139362
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,497,146 - 97,504,279 (-) NCBI
RefSeq Acc Id:
XR_010064578
Type:
NON-CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 3 97,496,807 - 97,504,279 (-) NCBI
Ensembl Acc Id:
ENSRNOP00000016191 ⟸ ENSRNOT00000016191
RefSeq Acc Id:
XP_038960447 ⟸ XM_039104519
- Peptide Label:
isoform X6
- UniProtKB:
A6HNA5 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSRNOP00000089562 ⟸ ENSRNOT00000105219
Ensembl Acc Id:
ENSRNOP00000078410 ⟸ ENSRNOT00000112322
Ensembl Acc Id:
ENSRNOP00000096044 ⟸ ENSRNOT00000098235
RefSeq Acc Id:
NP_001386188 ⟸ NM_001399259
- Peptide Label:
isoform 2 precursor
- UniProtKB:
A0A8I6GLF4 (UniProtKB/TrEMBL), A0A8I6AA51 (UniProtKB/TrEMBL)
RefSeq Acc Id:
NP_001386187 ⟸ NM_001399258
- Peptide Label:
isoform 1 precursor
- UniProtKB:
A6HNA4 (UniProtKB/TrEMBL), A0A8I6AA51 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_063139359 ⟸ XM_063283289
- Peptide Label:
isoform X2
- UniProtKB:
A0A8I6AA51 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_063139358 ⟸ XM_063283288
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_063139362 ⟸ XM_063283292
- Peptide Label:
isoform X5
RefSeq Acc Id:
XP_063139361 ⟸ XM_063283291
- Peptide Label:
isoform X4
RefSeq Acc Id:
XP_063139360 ⟸ XM_063283290
- Peptide Label:
isoform X3
RGD ID: 13692205 Promoter ID: EPDNEW_R2730 Type: initiation region Name: Slc39a13_1 Description: solute carrier family 39 member 13 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 3 79,892,313 - 79,892,373 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2016-03-09
Slc39a13
solute carrier family 39 member 13
Slc39a13
solute carrier family 39 (zinc transporter), member 13
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2009-12-16
Slc39a13
solute carrier family 39 (zinc transporter), member 13
Slc39a13
solute carrier family 39 (metal ion transporter), member 13
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2008-03-07
Slc39a13
solute carrier family 39 (metal ion transporter), member 13
Slc39a13
solute carrier family 39 (zinc transporter), member 13
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2006-03-07
Slc39a13
solute carrier family 39 (zinc transporter), member 13
Slc39a13_predicted
solute carrier family 39 (zinc transporter), member 13 (predicted)
Symbol and Name status set to approved
1299863 APPROVED
2005-01-12
Slc39a13_predicted
solute carrier family 39 (zinc transporter), member 13 (predicted)
Symbol and Name status set to approved
70820 APPROVED
