Slc39a13 (solute carrier family 39 member 13)

Gene: Slc39a13 (solute carrier family 39 member 13) Ictidomys tridecemlineatus

Analyze

Symbol:

Slc39a13

Name:

solute carrier family 39 member 13

RGD ID:

12703460

Description:

ENCODES a protein that exhibits metal ion transmembrane transporter activity (inferred); protein homodimerization activity (inferred); zinc ion transmembrane transporter activity (inferred); INVOLVED IN response to zinc ion (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); bone disease (ortholog); congenital disorder of glycosylation type IIc (ortholog); FOUND IN cytoplasmic vesicle membrane (inferred); endoplasmic reticulum membrane (inferred); Golgi apparatus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

solute carrier family 39 member 13, transcript variant X1; solute carrier family 39 member 13, transcript variant X2; solute carrier family 39 member 13, transcript variant X3; solute carrier family 39 member 13, transcript variant X4; solute carrier family 39 member 13, transcript variant X5; zinc transporter ZIP13

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	19,699,562 - 19,714,178 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	1,816,049 - 1,825,892 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	1,811,479 - 1,825,857 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alcoholic Liver Diseases (ISO)

bone disease (ISO)

congenital disorder of glycosylation type IIc (ISO)

connective tissue disease (ISO)

cutis laxa (ISO)

Ehlers-Danlos syndrome (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 3 (ISO)

fetal akinesia deformation sequence syndrome 1 (ISO)

Fine-Lubinsky Syndrome (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

intellectual disability (ISO)

kyphosis (ISO)

mitral valve prolapse (ISO)

myopia (ISO)

scleroderma (ISO)

Tooth Abnormalities (ISO)

Zinc Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brown fat cell differentiation (IEA)

connective tissue development (IEA)

intracellular zinc ion homeostasis (IEA)

metal ion transport (IEA)

response to zinc ion (ISO)

transmembrane transport (IEA)

zinc ion transmembrane transport (IEA)

zinc ion transport (IEA)

Cellular Component

cytoplasmic vesicle membrane (IEA)

endoplasmic reticulum membrane (IEA)

Golgi apparatus (IEA)

Golgi membrane (IEA)

membrane (IEA)

perinuclear region of cytoplasm (IEA)

Molecular Function

metal ion transmembrane transporter activity (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

zinc ion transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Bone morphogenetic proteins signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Slc39a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	19,699,562 - 19,714,178 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	1,816,049 - 1,825,892 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	1,811,479 - 1,825,857 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC39A13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	47,407,276 - 47,416,500 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	47,407,132 - 47,416,496 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	47,428,827 - 47,438,051 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	47,386,758 - 47,394,623 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	47,386,757 - 47,394,622	NCBI
Celera	11	47,571,745 - 47,579,746 (+)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	47,130,928 - 47,137,364 (+)	NCBI		HuRef
CHM1_1	11	47,429,277 - 47,437,283 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	47,566,179 - 47,575,404 (+)	NCBI		T2T-CHM13v2.0

Slc39a13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	90,892,136 - 90,900,754 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	90,892,136 - 90,900,762 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	91,061,781 - 91,070,441 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	91,061,791 - 91,070,417 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	90,901,948 - 90,910,378 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	90,862,630 - 90,871,060 (-)	NCBI		MGSCv36	mm8
Celera	2	92,446,265 - 92,454,697 (-)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	50.44	NCBI

Slc39a13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	97,495,229 - 97,504,279 (-)	NCBI		GRCr8
mRatBN7.2	3	77,039,411 - 77,047,528 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	77,037,565 - 77,049,226 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	80,517,903 - 80,525,744 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	89,116,918 - 89,124,755 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	86,968,086 - 86,975,910 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	79,884,524 - 79,892,664 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	79,884,524 - 79,892,429 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	86,593,277 - 86,601,315 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	75,421,153 - 75,429,058 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	75,317,524 - 75,325,349 (-)	NCBI
Celera	3	76,248,117 - 76,256,038 (-)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

Slc39a13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	845,678 - 852,772 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	845,076 - 852,772 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC39A13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	49,611,099 - 49,619,447 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	49,630,934 - 49,639,235 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	47,356,465 - 47,364,710 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	47,910,552 - 47,918,014 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	47,910,551 - 47,918,014 (+)	Ensembl	panpan1.1		panPan2

SLC39A13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	42,221,311 - 42,229,992 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	42,222,333 - 42,227,361 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	40,951,851 - 40,960,577 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	42,877,035 - 42,885,762 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	42,877,036 - 42,884,329 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	42,363,637 - 42,372,357 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	41,918,606 - 41,927,337 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	42,648,054 - 42,656,786 (-)	NCBI		UU_Cfam_GSD_1.0

SLC39A13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	15,194,017 - 15,210,425 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	15,194,028 - 15,202,936 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	16,400,675 - 16,409,565 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC39A13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	17,899,349 - 17,907,165 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	17,899,030 - 17,905,850 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	115,200,824 - 115,208,776 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc39a13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	1,368,965 - 1,375,586 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	1,368,965 - 1,376,378 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005329980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000029688 ⟹ ENSSTOP00000020251

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936562	1,816,049 - 1,825,892 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000037282 ⟹ ENSSTOP00000030286

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936562	1,820,303 - 1,822,607 (-)	Ensembl

RefSeq Acc Id:

XM_005329979 ⟹ XP_005330036

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	19,707,523 - 19,714,178 (-)	NCBI
SpeTri2.0	NW_004936562	1,819,165 - 1,825,846 (-)	NCBI

Sequence:

show sequence

CTAAGCAGGTGGCAACTCATGTAAATGGCTTTGTATTTTTCAGCACGCGGCATGCTTGGATGTC
CCTACTCTGGCTGTGGCATGGAGGGCCAAAGGCTCCTCTTCGTCACTGCCCTTGCCCTAGAGCT
CCTGGGAAGGGCTGGGGGGTCCCAGCCAGCCCCCCGGAGCTGGGGAGCTGCAGCAGCCTGTCGC
CTGGACAACAACGAAAGCGAGTCCTGGGGGACCCTGCTGAGCACAGAGAGGCTAGACACCTGGA
TCTGCTCCCTCCTGGGCTCACTCATGGTGGGACTCAGTGGGGTCTTCCCATTGCTTGTTATTCC
CCTGGAGATGGGGACCATGCTTCGCTCAGAAGCTGGGGCCCGGCGCCTGAAGCAACTACTCAGT
TTTGCCCTGGGGGGACTCTTAGGCAACGTGTTTCTGCACCTGCTGCCCGAGGCATGGGCCTACA
CATGCAGCTCCAGCCCTGGTGGTGAGGGCCAGAGCCTGCAGCAGCAACAGCAACTAGGACTATG
GGTCATCGCTGGCTTCCTGACCTTCCTGGCATTGGAGAAGATGTTCCTGGACAGCAAGAAGGAG
GGGGCCAACCAGGCCCCCAGCAAAGACCCCACTGCTGCCGCGCTCAATGGAGGCCACTGTCTGG
CCCAGCCGGCTGCAGAGCCCGGCCTGAGAGCCGTGGTCCGGAACCTCAAAGTCAGTGGCTATCT
CAACCTGCTGGCCAACACCATAGACAACTTCACTCACGGGCTGGCCGTGGCTGCCAGCTTCCTT
GTGAGCAAGAAGATCGGGCTCCTGACCACCATGGCCATCCTCTTGCATGAGATCCCCCACGAGG
TGGGCGACTTTGCCATCTTGCTCCGGGCCGGCTTTGACCGATGGAGCGCAGCCAAGCTGCAGCT
CTCAACAGCACTGGGGGGCCTTCTGGGCGCCTGCTTTGCCATCTGTACACAGTCCCCCAAGGGA
GTAGAGGAAACGGTGGCCTGGATCCTGCCCTTTACCTCTGGTGGCTTTCTCTATATCGCTTTGG
TGAACGTGTTGCCTGATCTCTTGGAGGAAGATGACCCTTGGCGCTCCCTGCAGCAGGTGCTCCT
GTTATGCTCTGGCATCACGGTGATGGCGCTGCTCTCACTCTGCGTAGAGTAACCTCCGCTGGTG
CCCTACCCCATACAGCAATAAGAGACTCGGATTCACTCTGTGACCTTGTGTGTGAAGCAGAGAA
GGCGAGTGCTTGAGAGAACCAGCCTCTGACCAGACAGGAGGGTGCGTGTGGTGTGCACATGTGG
TCAGAGGTGTGTGCGTGAGACCGACACTGTGATCTCCGTGCGCAGGGCCCAGGGCCCAGCACTG
CACCTGCCCCAGCCCTGCTGCAGCCTCCTCTCCCTGCCACCCTGTCGTCTTGCACCAGCTGGAG
TGAACAGTGAGGAATAGCAGAGGGCTTGCCCTGCCAGGACCCCAAAAGGAGAGCAGCCCAAGGA
GCCCAGGCTGCCAGGAACCCCAAAGCTATACTGCCTCTGCTGTGGCCTCCTGGGCCTCTGGCTT
GAGGGGGCAACCCTGTGCTCGTGCACCCCAGCCCCAAGAAGCCTAGGGGCCTAAGCTGGGGTAG
CTTCTCTCTGCTGCGTCCATTTTCCTGGCCTTGCCTTTGCCACCTCGACAGCCAAAGAAAGGGG
AGGCAGGTTCTCCTGTAGCCCCCAACCCCACTCAGCACTGACGGTCCTACCCCTCCAAGCACTG
AGCAGGGAGCTGGAGGACTTTTCTTCAGGGCTGCCTGCCCAGACTAGCTCCTGTTCCCCTGGTG
AACGCTCCCTGGCAGTGCTGGCAGCTCTTGCCACCTCCAGCTGCCAAACAGCAGCCTGCAGGGC
AGCAAGCAGCCCCAACTGGCCAGAGGCCTCCCAGTCCAGCTCAGGGATGCTCCTGCCAACACAG
GCTCTGACAGACATGCCTGGGGCGGGAGGAACGAGCCAGGCTGCCCTTCCCTGCTAGGCCCCTT
CTCTTCTGCCCATGGAGGTAAGGTGGGCGTGGCGAAGGCTCCACATTGTCAGCGCTCAGGAATG
TGCTCTGGGAGAATGCTGAAGCCATAATCCCCAGCTATTTCCCTTGGCTGGCGCCCAGGTACTC
AGCTGGCCCACTCCACAGCCAGGATCCAATCCTGCCGCTGGACTGTGGATATTTAGAGAATTGG
CCGTGGAAAGGGTCTCTCATGGTCCTACAGCCATCATGCTGTGGTACCATCTGTATCTGTAAAT
ACCTGTTCTATAGATATGAATAAATATTCTCCACAGAA

hide sequence

RefSeq Acc Id:

XM_005329980 ⟹ XP_005330037

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	19,707,523 - 19,714,178 (-)	NCBI
SpeTri2.0	NW_004936562	1,819,165 - 1,825,851 (-)	NCBI

Sequence:

show sequence

GTTTCCTAAGCAGGTGGCAACTCATGTAAATGGCTTTGTATTTTTCAGCACGCGGCATGCTTGG
ATGTCCCTACTCTGGCTGTGGCATGGAGGGCCAAAGGCTCCTCTTCGTCACTGCCCTTGCCCTA
GAGCTCCTGGGAAGGGCTGGGGGGTCCCAGCCAGCCCCCCGGAGCTGGGGAGCTGCAGCAGCCT
GTCGCCTGGACAACAACGAAAGCGAGTCCTGGGGGACCCTGCTGAGCACAGAGAGGCTAGACAC
CTGGATCTGCTCCCTCCTGGGCTCACTCATGGTGGGACTCAGTGGGGTCTTCCCATTGCTTGTT
ATTCCCCTGGAGATGGGGACCATGCTTCGCTCAGAAGCTGGGGCCCGGCGCCTGAAGCAACTAC
TCAGTTTTGCCCTGGGGGGACTCTTAGGCAACGTGTTTCTGCACCTGCTGCCCGAGGCATGGGC
CTACACATGCAGCTCCAGCCCTGGTGGTGAGGGCCAGAGCCTGCAGCAGCAACAGCAACTAGGA
CTATGGGTCATCGCTGGCTTCCTGACCTTCCTGGCATTGGAGAAGATGTTCCTGGACAGCAAGA
AGGAGGGGGCCAACCAGGCCCCCAGCAAAGACCCCACTGCTGCCGCGCTCAATGGAGGCCACTG
TCTGGCCCAGCCGGCTGCAGAGCCCGGCCTGAGAGCCGTGGTCCGGAACCTCAAAGTCAGTGGC
TATCTCAACCTGCTGGCCAACACCATAGACAACTTCACTCACGGGCTGGCCGTGGCTGCCAGCT
TCCTTGTGAGCAAGAAGATCGGGCTCCTGACCACCATGGCCATCCTCTTGCATGAGATCCCCCA
CGAGGTGGGCGACTTTGCCATCTTGCTCCGGGCCGGCTTTGACCGATGGAGCGCAGCCAAGCTG
CAGCTCTCAACAGCACTGGGGGGCCTTCTGGGCGCCTGCTTTGCCATCTGTACACAGTCCCCCA
AGGGAAGGAAACGGTGGCCTGGATCCTGCCCTTTACCTCTGGTGGCTTTCTCTATATCGCTTTG
GTGAACGTGTTGCCTGATCTCTTGGAGGAAGATGACCCTTGGCGCTCCCTGCAGCAGGTGCTCC
TGTTATGCTCTGGCATCACGGTGATGGCGCTGCTCTCACTCTGCGTAGAGTAACCTCCGCTGGT
GCCCTACCCCATACAGCAATAAGAGACTCGGATTCACTCTGTGACCTTGTGTGTGAAGCAGAGA
AGGCGAGTGCTTGAGAGAACCAGCCTCTGACCAGACAGGAGGGTGCGTGTGGTGTGCACATGTG
GTCAGAGGTGTGTGCGTGAGACCGACACTGTGATCTCCGTGCGCAGGGCCCAGGGCCCAGCACT
GCACCTGCCCCAGCCCTGCTGCAGCCTCCTCTCCCTGCCACCCTGTCGTCTTGCACCAGCTGGA
GTGAACAGTGAGGAATAGCAGAGGGCTTGCCCTGCCAGGACCCCAAAAGGAGAGCAGCCCAAGG
AGCCCAGGCTGCCAGGAACCCCAAAGCTATACTGCCTCTGCTGTGGCCTCCTGGGCCTCTGGCT
TGAGGGGGCAACCCTGTGCTCGTGCACCCCAGCCCCAAGAAGCCTAGGGGCCTAAGCTGGGGTA
GCTTCTCTCTGCTGCGTCCATTTTCCTGGCCTTGCCTTTGCCACCTCGACAGCCAAAGAAAGGG
GAGGCAGGTTCTCCTGTAGCCCCCAACCCCACTCAGCACTGACGGTCCTACCCCTCCAAGCACT
GAGCAGGGAGCTGGAGGACTTTTCTTCAGGGCTGCCTGCCCAGACTAGCTCCTGTTCCCCTGGT
GAACGCTCCCTGGCAGTGCTGGCAGCTCTTGCCACCTCCAGCTGCCAAACAGCAGCCTGCAGGG
CAGCAAGCAGCCCCAACTGGCCAGAGGCCTCCCAGTCCAGCTCAGGGATGCTCCTGCCAACACA
GGCTCTGACAGACATGCCTGGGGCGGGAGGAACGAGCCAGGCTGCCCTTCCCTGCTAGGCCCCT
TCTCTTCTGCCCATGGAGGTAAGGTGGGCGTGGCGAAGGCTCCACATTGTCAGCGCTCAGGAAT
GTGCTCTGGGAGAATGCTGAAGCCATAATCCCCAGCTATTTCCCTTGGCTGGCGCCCAGGTACT
CAGCTGGCCCACTCCACAGCCAGGATCCAATCCTGCCGCTGGACTGTGGATATTTAGAGAATTG
GCCGTGGAAAGGGTCTCTCATGGTCCTACAGCCATCATGCTGTGGTACCATCTGTATCTGTAAA
TACCTGTTCTATAGATATGAATAAATATTCTCCACAGAA

hide sequence

RefSeq Acc Id:

XM_013360648 ⟹ XP_013216102

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	19,699,808 - 19,714,178 (-)	NCBI
SpeTri2.0	NW_004936562	1,811,527 - 1,825,854 (-)	NCBI

Sequence:

show sequence

CACGTTTCCTAAGCAGGTGGCAACTCATGTAAATGGCTTTGTATTTTTCAGCACGCGGCATGCT
TGGATGTCCCTACTCTGGCTGTGGCATGGAGGGCCAAAGGCTCCTCTTCGTCACTGCCCTTGCC
CTAGAGCTCCTGGGAAGGGCTGGGGGGTCCCAGCCAGCCCCCCGGAGCTGGGGAGCTGCAGCAG
CCTGTCGCCTGGACAACAACGAAAGCGAGTCCTGGGGGACCCTGCTGAGCACAGAGAGGCTAGA
CACCTGGATCTGCTCCCTCCTGGGCTCACTCATGGTGGGACTCAGTGGGGTCTTCCCATTGCTT
GTTATTCCCCTGGAGATGGGGACCATGCTTCGCTCAGAAGCTGGGGCCCGGCGCCTGAAGCAAC
TACTCAGTTTTGCCCTGGGGGGACTCTTAGGCAACGTGTTTCTGCACCTGCTGCCCGAGGCATG
GGCCTACACATGCAGCTCCAGCCCTGGTGGTGAGGGCCAGAGCCTGCAGCAGCAACAGCAACTA
GGACTATGGGTCATCGCTGGCTTCCTGACCTTCCTGGCATTGGAGAAGATGTTCCTGGACAGCA
AGAAGGAGGGGGCCAACCAGGCCCCCAGCAAAGACCCCACTGCTGCCGCGCTCAATGGAGGCCA
CTGTCTGGCCCAGCCGGCTGCAGAGCCCGGCCTGAGAGCCGTGGTCCGGAACCTCAAAGTCAGT
GGCTATCTCAACCTGCTGGCCAACACCATAGACAACTTCACTCACGGGCTGGCCGTGGCTGCCA
GCTTCCTTGTGAGCAAGAAGATCGGGCTCCTGACCACCATGGCCATCCTCTTGCATGAGATCCC
CCACGAGGTGGGCGACTTTGCCATCTTGCTCCGGGCCGGCTTTGACCGATGGAGCGCAGCCAAG
CTGCAGCTCTCAACAGCACTGGGGGGCCTTCTGGGCGCCTGCTTTGCCATCTGTACACAGTCCC
CCAAGGGAAGGAAACGGTGGCCTGGATCCTGCCCTTTACCTCTGGTGGCTTTCTCTATATCGCT
TTGGTGAACGTGTTGCCTGATCTCTTGGAGGAAGATGACCCTTGGAGAAAGCCACAGGCCCCAT
GTCTCCTCCAGCGAGGCGAGGAAGGAGCAGAAGGGCACAGAG

hide sequence

RefSeq Acc Id:

XM_021729606 ⟹ XP_021585281

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	19,699,808 - 19,714,178 (-)	NCBI
SpeTri2.0	NW_004936562	1,811,479 - 1,825,854 (-)	NCBI

Sequence:

show sequence

CACGTTTCCTAAGCAGGTGGCAACTCATGTAAATGGCTTTGTATTTTTCAGCACGCGGCATGCT
TGGATGTCCCTACTCTGGCTGTGGCATGGAGGGCCAAAGGCTCCTCTTCGTCACTGCCCTTGCC
CTAGAGCTCCTGGGAAGGGCTGGGGGGTCCCAGCCAGCCCCCCGGAGCTGGGGAGCTGCAGCAG
CCTGTCGCCTGGACAACAACGAAAGCGAGTCCTGGGGGACCCTGCTGAGCACAGAGAGGCTAGA
CACCTGGATCTGCTCCCTCCTGGGCTCACTCATGGTGGGACTCAGTGGGGTCTTCCCATTGCTT
GTTATTCCCCTGGAGATGGGGACCATGCTTCGCTCAGAAGCTGGGGCCCGGCGCCTGAAGCAAC
TACTCAGTTTTGCCCTGGGGGGACTCTTAGGCAACGTGTTTCTGCACCTGCTGCCCGAGGCATG
GGCCTACACATGCAGCTCCAGCCCTGGTGGTGAGGGCCAGAGCCTGCAGCAGCAACAGCAACTA
GGACTATGGGTCATCGCTGGCTTCCTGACCTTCCTGGCATTGGAGAAGATGTTCCTGGACAGCA
AGAAGGAGGGGGCCAACCAGGCCCCCAGCAAAGACCCCACTGCTGCCGCGCTCAATGGAGGCCA
CTGTCTGGCCCAGCCGGCTGCAGAGCCCGGCCTGAGAGCCGTGGTCCGGAACCTCAAAGTCAGT
GGCTATCTCAACCTGCTGGCCAACACCATAGACAACTTCACTCACGGGCTGGCCGTGGCTGCCA
GCTTCCTTGTGAGCAAGAAGATCGGGCTCCTGACCACCATGGCCATCCTCTTGCATGAGATCCC
CCACGAGGTGGGCGACTTTGCCATCTTGCTCCGGGCCGGCTTTGACCGATGGAGCGCAGCCAAG
CTGCAGCTCTCAACAGCACTGGGGGGCCTTCTGGGCGCCTGCTTTGCCATCTGTACACAGTCCC
CCAAGGGAGTAGAGGAAACGGTGGCCTGGATCCTGCCCTTTACCTCTGGTGGCTTTCTCTATAT
CGCTTTGGTGAACGTGTTGCCTGATCTCTTGGAGGAAGATGACCCTTGGAGAAAGCCACAGGCC
CCATGTCTCCTCCAGCGAGGCGAGGAAGGAGCAGAAGGGCACAGAGTGGCCAGGGCCTGCCTGT
GAGGTCTCCACTGGCCGCACCGGGGCCCAG

hide sequence

RefSeq Acc Id:

XM_040284401 ⟹ XP_040140335

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	19,699,562 - 19,714,178 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005330036	(Get FASTA)	NCBI Sequence Viewer
	XP_005330037	(Get FASTA)	NCBI Sequence Viewer
	XP_013216102	(Get FASTA)	NCBI Sequence Viewer
	XP_021585281	(Get FASTA)	NCBI Sequence Viewer
	XP_040140335	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000020251.2
	ENSSTOP00000030286.1
GenBank Protein	KAG3285328	(Get FASTA)	NCBI Sequence Viewer
	KAG3285329	(Get FASTA)	NCBI Sequence Viewer
	KAG3285330	(Get FASTA)	NCBI Sequence Viewer
	KAG3285331	(Get FASTA)	NCBI Sequence Viewer
	KAG3285332	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013216102 ⟸ XM_013360648
- Peptide Label:	isoform X3
- UniProtKB:	I3N7A5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALYFSARGMLGCPYSGCGMEGQRLLFVTALALELLGRAGGSQPAPRSWGAAAACRLDNNESES WGTLLSTERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGARRLKQLLSFALGGLLG NVFLHLLPEAWAYTCSSSPGGEGQSLQQQQQLGLWVIAGFLTFLALEKMFLDSKKEGANQAPSK DPTAAALNGGHCLAQPAAEPGLRAVVRNLKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLL TTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGACFAICTQSPKGRKRWPGSC PLPLVAFSISLW hide sequence

RefSeq Acc Id:	XP_005330036 ⟸ XM_005329979
- Peptide Label:	isoform X2
- UniProtKB:	I3N7A5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALYFSARGMLGCPYSGCGMEGQRLLFVTALALELLGRAGGSQPAPRSWGAAAACRLDNNESES WGTLLSTERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGARRLKQLLSFALGGLLG NVFLHLLPEAWAYTCSSSPGGEGQSLQQQQQLGLWVIAGFLTFLALEKMFLDSKKEGANQAPSK DPTAAALNGGHCLAQPAAEPGLRAVVRNLKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLL TTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGACFAICTQSPKGVEETVAWI LPFTSGGFLYIALVNVLPDLLEEDDPWRSLQQVLLLCSGITVMALLSLCVE hide sequence

RefSeq Acc Id:	XP_005330037 ⟸ XM_005329980
- Peptide Label:	isoform X3
- UniProtKB:	I3N7A5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALYFSARGMLGCPYSGCGMEGQRLLFVTALALELLGRAGGSQPAPRSWGAAAACRLDNNESES WGTLLSTERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGARRLKQLLSFALGGLLG NVFLHLLPEAWAYTCSSSPGGEGQSLQQQQQLGLWVIAGFLTFLALEKMFLDSKKEGANQAPSK DPTAAALNGGHCLAQPAAEPGLRAVVRNLKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLL TTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGACFAICTQSPKGRKRWPGSC PLPLVAFSISLW hide sequence

RefSeq Acc Id:	XP_021585281 ⟸ XM_021729606
- Peptide Label:	isoform X1
- UniProtKB:	I3N7A5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALYFSARGMLGCPYSGCGMEGQRLLFVTALALELLGRAGGSQPAPRSWGAAAACRLDNNESES WGTLLSTERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGARRLKQLLSFALGGLLG NVFLHLLPEAWAYTCSSSPGGEGQSLQQQQQLGLWVIAGFLTFLALEKMFLDSKKEGANQAPSK DPTAAALNGGHCLAQPAAEPGLRAVVRNLKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLL TTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGACFAICTQSPKGVEETVAWI LPFTSGGFLYIALVNVLPDLLEEDDPWRKPQAPCLLQRGEEGAEGHRVARACL hide sequence

RefSeq Acc Id:	XP_040140335 ⟸ XM_040284401
- Peptide Label:	isoform X3
- UniProtKB:	I3N7A5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000020251 ⟸ ENSSTOT00000029688

RefSeq Acc Id:

ENSSTOP00000030286 ⟸ ENSSTOT00000037282

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000027722	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000029688.2	UniProtKB/TrEMBL
	ENSSTOT00000037282.1	UniProtKB/TrEMBL
InterPro	ZIP	UniProtKB/TrEMBL
NCBI Gene	Slc39a13	ENTREZGENE
PANTHER	ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4	UniProtKB/TrEMBL
	ZINC TRANSPORTER ZIP13	UniProtKB/TrEMBL
Pfam	Zip	UniProtKB/TrEMBL
UniProt	A0A287D9V7_ICTTR	UniProtKB/TrEMBL
	I3N7A5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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