F13b (coagulation factor XIII B chain)

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Gene: F13b (coagulation factor XIII B chain) Chinchilla lanigera

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Symbol:

F13b

Name:

coagulation factor XIII B chain

RGD ID:

9043386

Description:

INVOLVED IN blood coagulation (ortholog); blood coagulation, fibrin clot formation (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH cholesteatoma (ortholog); factor XIII deficiency (ortholog); Factor XIII, B Subunit, Deficiency Of (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coagulation factor XIII, B polypeptide

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	33,632,144 - 33,660,535 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	33,633,911 - 33,660,506 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cholesteatoma (ISO)

factor XIII deficiency (ISO)

Factor XIII, B Subunit, Deficiency Of (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

retinitis pigmentosa 12 (ISO)

thrombosis (ISO)

Venous Thrombosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood coagulation (ISO)

blood coagulation, fibrin clot formation (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

acenocoumarol pharmacodynamics pathway (ISO)

alteplase pharmacodynamics pathway (ISO)

aminocaproic acid pharmacodynamics pathway (ISO)

anistreplase pharmacodynamics pathway (ISO)

aprotinin pharmacodynamics pathway (ISO)

argatroban pharmacodynamics pathway (ISO)

bivalirudin pharmacodynamics pathway (ISO)

coagulation cascade pathway (ISO)

dicoumarol pharmacodynamics pathway (ISO)

enoxaparin pharmacodynamics pathway (ISO)

fondaparinux pharmacodynamics pathway (ISO)

heparin pharmacodynamics pathway (ISO)

phenindione pharmacodynamics pathway (ISO)

reteplase pharmacodynamics pathway (ISO)

tranexamic acid pharmacodynamics pathway (ISO)

warfarin pharmacodynamics pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data

F13b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	33,632,144 - 33,660,535 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	33,633,911 - 33,660,506 (-)	NCBI	ChiLan1.0	ChiLan1.0

F13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	197,038,741 - 197,067,260 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	197,038,741 - 197,067,260 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	197,007,871 - 197,036,390 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	195,274,944 - 195,303,020 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	193,739,977 - 193,768,021	NCBI
Celera	1	170,133,795 - 170,161,866 (-)	NCBI		Celera
Cytogenetic Map	1	q31.3	NCBI
HuRef	1	168,165,553 - 168,193,910 (-)	NCBI		HuRef
CHM1_1	1	198,430,602 - 198,458,850 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	196,300,565 - 196,329,084 (-)	NCBI		T2T-CHM13v2.0

F13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	139,429,285 - 139,451,496 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	139,429,440 - 139,451,490 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	139,501,547 - 139,523,758 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	139,501,702 - 139,523,752 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	141,398,284 - 141,420,333 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	141,318,138 - 141,340,167 (+)	NCBI		MGSCv36	mm8
Celera	1	142,138,905 - 142,161,049 (+)	NCBI		Celera
Cytogenetic Map	1	F	NCBI
cM Map	1	61.57	NCBI

F13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	53,681,639 - 53,707,114 (+)	NCBI		GRCr8
mRatBN7.2	13	51,130,908 - 51,156,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	51,130,920 - 51,156,381 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	53,730,358 - 53,753,759 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	55,018,290 - 55,041,691 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	52,293,853 - 52,323,690 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	56,598,891 - 56,623,132 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	56,598,957 - 56,623,124 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	61,616,993 - 61,641,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	52,867,851 - 52,889,426 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	52,881,574 - 52,902,300 (+)	NCBI
Celera	13	51,393,593 - 51,416,193 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

F13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	52,319,904 - 52,348,993 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	52,289,056 - 52,318,146 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	172,623,336 - 172,651,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	176,938,155 - 176,965,609 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	176,937,158 - 176,965,773 (-)	Ensembl	panpan1.1		panPan2

F13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	5,674,458 - 5,700,928 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	5,674,416 - 5,700,905 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	5,303,651 - 5,331,440 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	5,370,630 - 5,398,422 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	5,370,530 - 5,396,990 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	5,305,382 - 5,333,161 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	5,406,384 - 5,434,127 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	5,439,496 - 5,467,295 (+)	NCBI		UU_Cfam_GSD_1.0

F13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	77,477,966 - 77,500,748 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936567	6,712,666 - 6,735,539 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

F13B
(Sus scrofa - pig)

No map positions available.

F13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	32,357,540 - 32,390,349 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	32,357,993 - 32,389,973 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	33,265,712 - 33,296,197 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

F13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	3,231,462 - 3,274,186 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624798	3,231,592 - 3,261,500 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005375115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005375116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01006485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01131030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000021410 ⟹ ENSCLAP00000021209

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	33,632,144 - 33,660,535 (-)	Ensembl

RefSeq Acc Id:

XM_005375114 ⟹ XP_005375171

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	33,633,911 - 33,660,506 (-)	NCBI

Sequence:

show sequence

CTGTGGCTATTGTCCTTATGTGCTATGTTCTTATTGGCCTCTAGTAGGAAAAGTAATGTCAATT
AATATGGTTGTGTGATGTTAACATTATTTGAAAACATTTTAATTGAAATACAAAGTTTTTACCA
ATGAGATTTAGATGGATGTTTGTAAATTATTAACTTTTTCCTGAAGAAAATGTTGTGTGCCTAA
TGACAAATCTCCAGCATTTTAGAGTTGTTGAAATCTCTATGAAGCATAGTACTGAAGATGAGAT
TGAAAGAACTGGCTTTTATTATTATAGTAATGATCCCAGGAGAACTGTATGCAGAAGAGAAACC
TTGTGGTTTTCCCACTGTGCAAAATGGAAGGATTGCCCAATATTACTATACTTTTAAAAGTTTT
TACTTTCCAATGACAATAGACACCAAACTGTCATTTTTCTGCTTGGCTGGTTATACAGCCGAAA
ATGGAAAACAAGAAGGGCGAACCAGATGTACAACAGAAGGCTGGTCTCCAGAACCCAGGTGCCT
CAAAAAATGCACTAAGCCTGACCTGACAAATGGTTACCTTGCTGATGTAAAATTATTGTACAAA
TTTCAAGAGAATGTGAGTTATACTTGTGCCTCAGGATACAAAACCACTGGAGGGAATGATGAAG
AAGTGATTCAATGTCTTTCTGAAGGGTGGTCTTCTCAACCATCCTGTACAAAGGAACATGAAAC
ATGTCTAGCTCCTGAATTACATAATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAG
GAAAAAGTGCAATACGAATGTGCTGTTGGCTACTACACAGCTGGAGGGAAGCAGTCGGAGGAGG
CTGAATGCCGCACATCCGGTTGGTCTCTAACGCCAAAATGTACCAAATTAAAGTGTACTCCTTT
AAGATTACTAGAAAATGGATATTTTCATCCTGTAAAGCAAACCTATGAGGAAGGAGATGTAGTT
CAGTTTTTCTGTCATGAAAATTATTATCTGAGTGGATCTGACTTAATTCAGTGCTATAACTTTG
GCTGGTATCCAGGATCTCCTGTATGTGAAGGAAGAAGAAATAGATGCCCTCCTCCACCTTTGCC
TCTAAACTCCAAAATTCAAGCATATTCAACAAGTTATCGTCATGGTGAAATAGTTCATGTAGAA
TGTGAACTTAATTTTGTGATCCAGGGCTCAGAAGAAATACGCTGTGAAAATGGAAAATGGACAG
ACCCTCCAAAATGCATCGAAGCAAAGGAGAAGGTTGCCTGTGAGGAACCACCCGTCATTGCGAA
CGGTACAGCAAACGTGCGCTCTGCGATTTATTACAGTGGAGATAAAGTGACGTACAGTTGTAAA
AGCGGCTACCGTCTCCGTGGATCACATGAGATAACTTGCAGTCGTGGAAAATGGACACTTCCCC
CTGAGTGTGTTGAAAATAATGAGAATTGTAAGCCTCCACCTGAAGTAATAAATGGGACTATTAC
TGATGGGTTATTGTCCAGTTATACAACAGGATCCTCAGTGGAATATAAATGTAATGAATATTAT
TTATTGAAAGGATCAAAAATATCTCAATGTGAACAAGGAAAATGGTCATCCCCACCTGTTTGCT
TGGAGCCATGCACTGTTGATGTGGATTACATGAACAGAAATAACATCGAGATGAAGTGGAAATA
TGAAGGAAAGGTCTTACATGGAGATTTAATTGATTTTGTCTGTAAACAAGGATTTGACTTGTCT
CCGTTGACCCCACTGTCAGAGTTGTCTGTGCAGTGCAATAGAGGAGAAGTGAAATATCCTTTGT
GTGTCAGAAAAGAATCTAAAGGAAAATGTGCATTTCCTCCACTTATAAAAAATGGAGTCATTAT
TAGTTCAAAGGTAGACACCTATGAGAACGGTTCCTCTGTAGAATACAGATGTTTTGACCACTAT
TTTCTACAAGGATCCAAGGAGGCTTATTGCGTAGAGGGAGTATGGACTACACCACCGATGTGTT
TAGAGCCTTGCACATTATCTTCTGATGAAATGCAAAAGAATAATTTACTCTTGAAATGGTATTT
TGACAACAGACCACATATTCTCCATGGCGAGTATATTGAATTTCTTTGCAGTGGAGATACTTAT
ATAGTGGAGTCATCTATTATCGGGTTGGAGCTTAGAGTACAATGTGACAGAGGACGGTTGAAGT
ATCCAACATGTATTCCAAGGGAAAGGAGTCCGTCTTTTCAAGAACCTTTAAGGACATAAAAATG
AATGTCAGAAAGAAGAATAGTATTTCAACACATCATAAAATCTCTAATGAAACATCATGTTTAG
AAGGAATATGTGGAATTATAAACCTCTAAGTATTGCTTAAAGATTTGATTCTGAATTGCTTCTG
TTGGACATTTCCTTTATTTATGAATAAAAGCCCCAAATGCCATTTCCTTTTTAGTTTGGATGAC
TGGACACTTGATTTAACCATTATTGAATATCTTTCTTTTCATAAAAACTGATCACATCAATTGA

hide sequence

RefSeq Acc Id:

XM_005375115 ⟹ XP_005375172

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	33,633,911 - 33,660,300 (-)	NCBI

Sequence:

show sequence

CATTTTAGAGTTGTTGAAATCTCTATGAAGCATAGTACTGAAGATGAGATTGAAAGAACTGGCT
TTTATTATTATAGTAATGATCCCAGGAGAACTGTATGCAGAAGATCAAGACTGAGAACATAACA
GTACCCTGGACACCTTCTAAATGGCCATTCAAGAAACTAAACCCCAAAGTTAACTATTCTGACT
TCATTACTGTGGTTAGTCCTCTTTTACAAAGAGAAACCTTGTGGTTTTCCCACTGTGCAAAATG
GAAGGATTGCCCAATATTACTATACTTTTAAAAGTTTTTACTTTCCAATGACAATAGACACCAA
ACTGTCATTTTTCTGCTTGGCTGGTTATACAGCCGAAAATGGAAAACAAGAAGGGCGAACCAGA
TGTACAACAGAAGGCTGGTCTCCAGAACCCAGGTGCCTCAAAAAATGCACTAAGCCTGACCTGA
CAAATGGTTACCTTGCTGATGTAAAATTATTGTACAAATTTCAAGAGAATGTGAGTTATACTTG
TGCCTCAGGATACAAAACCACTGGAGGGAATGATGAAGAAGTGATTCAATGTCTTTCTGAAGGG
TGGTCTTCTCAACCATCCTGTACAAAGGAACATGAAACATGTCTAGCTCCTGAATTACATAATG
GAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGAAAAAGTGCAATACGAATGTGCTGT
TGGCTACTACACAGCTGGAGGGAAGCAGTCGGAGGAGGCTGAATGCCGCACATCCGGTTGGTCT
CTAACGCCAAAATGTACCAAATTAAAGTGTACTCCTTTAAGATTACTAGAAAATGGATATTTTC
ATCCTGTAAAGCAAACCTATGAGGAAGGAGATGTAGTTCAGTTTTTCTGTCATGAAAATTATTA
TCTGAGTGGATCTGACTTAATTCAGTGCTATAACTTTGGCTGGTATCCAGGATCTCCTGTATGT
GAAGGAAGAAGAAATAGATGCCCTCCTCCACCTTTGCCTCTAAACTCCAAAATTCAAGCATATT
CAACAAGTTATCGTCATGGTGAAATAGTTCATGTAGAATGTGAACTTAATTTTGTGATCCAGGG
CTCAGAAGAAATACGCTGTGAAAATGGAAAATGGACAGACCCTCCAAAATGCATCGAAGCAAAG
GAGAAGGTTGCCTGTGAGGAACCACCCGTCATTGCGAACGGTACAGCAAACGTGCGCTCTGCGA
TTTATTACAGTGGAGATAAAGTGACGTACAGTTGTAAAAGCGGCTACCGTCTCCGTGGATCACA
TGAGATAACTTGCAGTCGTGGAAAATGGACACTTCCCCCTGAGTGTGTTGAAAATAATGAGAAT
TGTAAGCCTCCACCTGAAGTAATAAATGGGACTATTACTGATGGGTTATTGTCCAGTTATACAA
CAGGATCCTCAGTGGAATATAAATGTAATGAATATTATTTATTGAAAGGATCAAAAATATCTCA
ATGTGAACAAGGAAAATGGTCATCCCCACCTGTTTGCTTGGAGCCATGCACTGTTGATGTGGAT
TACATGAACAGAAATAACATCGAGATGAAGTGGAAATATGAAGGAAAGGTCTTACATGGAGATT
TAATTGATTTTGTCTGTAAACAAGGATTTGACTTGTCTCCGTTGACCCCACTGTCAGAGTTGTC
TGTGCAGTGCAATAGAGGAGAAGTGAAATATCCTTTGTGTGTCAGAAAAGAATCTAAAGGAAAA
TGTGCATTTCCTCCACTTATAAAAAATGGAGTCATTATTAGTTCAAAGGTAGACACCTATGAGA
ACGGTTCCTCTGTAGAATACAGATGTTTTGACCACTATTTTCTACAAGGATCCAAGGAGGCTTA
TTGCGTAGAGGGAGTATGGACTACACCACCGATGTGTTTAGAGCCTTGCACATTATCTTCTGAT
GAAATGCAAAAGAATAATTTACTCTTGAAATGGTATTTTGACAACAGACCACATATTCTCCATG
GCGAGTATATTGAATTTCTTTGCAGTGGAGATACTTATATAGTGGAGTCATCTATTATCGGGTT
GGAGCTTAGAGTACAATGTGACAGAGGACGGTTGAAGTATCCAACATGTATTCCAAGGGAAAGG
AGTCCGTCTTTTCAAGAACCTTTAAGGACATAAAAATGAATGTCAGAAAGAAGAATAGTATTTC
AACACATCATAAAATCTCTAATGAAACATCATGTTTAGAAGGAATATGTGGAATTATAAACCTC
TAAGTATTGCTTAAAGATTTGATTCTGAATTGCTTCTGTTGGACATTTCCTTTATTTATGAATA
AAAGCCCCAAATGCCATTTCCTTTTTAGTTTGGATGACTGGACACTTGATTTAACCATTATTGA
ATATCTTTCTTTTCATAAAAACTGATCACATCAATTGA

hide sequence

RefSeq Acc Id:

XM_005375116 ⟹ XP_005375173

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	33,633,911 - 33,657,730 (-)	NCBI

Sequence:

show sequence

TACCCTGACAAGTGCTTGTCTCTCCTGGTGATGGGGAGGAAACGTGTCCTAAGAGAGAGTGTTT
GGAGCCATGTTTTGTTTCCCTTCTGTGTCCAGCAAGAGAACCTCAGGGATCATTCTTGTACATT
CACTACAGCATTGCTGTTCTTGGAGAGTCTCTTCTCATTGTGAATTTCCCGTCCTTGGATCAAG
ACTGAGAACATAACAGTACCCTGGACACCTTCTAAATGGCCATTCAAGAAACTAAACCCCAAAG
TTAACTATTCTGACTTCATTACTGTGGTTAGTCCTCTTTTACAAAGAGAAACCTTGTGGTTTTC
CCACTGTGCAAAATGGAAGGATTGCCCAATATTACTATACTTTTAAAAGTTTTTACTTTCCAAT
GACAATAGACACCAAACTGTCATTTTTCTGCTTGGCTGGTTATACAGCCGAAAATGGAAAACAA
GAAGGGCGAACCAGATGTACAACAGAAGGCTGGTCTCCAGAACCCAGGTGCCTCAAAAAATGCA
CTAAGCCTGACCTGACAAATGGTTACCTTGCTGATGTAAAATTATTGTACAAATTTCAAGAGAA
TGTGAGTTATACTTGTGCCTCAGGATACAAAACCACTGGAGGGAATGATGAAGAAGTGATTCAA
TGTCTTTCTGAAGGGTGGTCTTCTCAACCATCCTGTACAAAGGAACATGAAACATGTCTAGCTC
CTGAATTACATAATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGAAAAAGTGCA
ATACGAATGTGCTGTTGGCTACTACACAGCTGGAGGGAAGCAGTCGGAGGAGGCTGAATGCCGC
ACATCCGGTTGGTCTCTAACGCCAAAATGTACCAAATTAAAGTGTACTCCTTTAAGATTACTAG
AAAATGGATATTTTCATCCTGTAAAGCAAACCTATGAGGAAGGAGATGTAGTTCAGTTTTTCTG
TCATGAAAATTATTATCTGAGTGGATCTGACTTAATTCAGTGCTATAACTTTGGCTGGTATCCA
GGATCTCCTGTATGTGAAGGAAGAAGAAATAGATGCCCTCCTCCACCTTTGCCTCTAAACTCCA
AAATTCAAGCATATTCAACAAGTTATCGTCATGGTGAAATAGTTCATGTAGAATGTGAACTTAA
TTTTGTGATCCAGGGCTCAGAAGAAATACGCTGTGAAAATGGAAAATGGACAGACCCTCCAAAA
TGCATCGAAGCAAAGGAGAAGGTTGCCTGTGAGGAACCACCCGTCATTGCGAACGGTACAGCAA
ACGTGCGCTCTGCGATTTATTACAGTGGAGATAAAGTGACGTACAGTTGTAAAAGCGGCTACCG
TCTCCGTGGATCACATGAGATAACTTGCAGTCGTGGAAAATGGACACTTCCCCCTGAGTGTGTT
GAAAATAATGAGAATTGTAAGCCTCCACCTGAAGTAATAAATGGGACTATTACTGATGGGTTAT
TGTCCAGTTATACAACAGGATCCTCAGTGGAATATAAATGTAATGAATATTATTTATTGAAAGG
ATCAAAAATATCTCAATGTGAACAAGGAAAATGGTCATCCCCACCTGTTTGCTTGGAGCCATGC
ACTGTTGATGTGGATTACATGAACAGAAATAACATCGAGATGAAGTGGAAATATGAAGGAAAGG
TCTTACATGGAGATTTAATTGATTTTGTCTGTAAACAAGGATTTGACTTGTCTCCGTTGACCCC
ACTGTCAGAGTTGTCTGTGCAGTGCAATAGAGGAGAAGTGAAATATCCTTTGTGTGTCAGAAAA
GAATCTAAAGGAAAATGTGCATTTCCTCCACTTATAAAAAATGGAGTCATTATTAGTTCAAAGG
TAGACACCTATGAGAACGGTTCCTCTGTAGAATACAGATGTTTTGACCACTATTTTCTACAAGG
ATCCAAGGAGGCTTATTGCGTAGAGGGAGTATGGACTACACCACCGATGTGTTTAGAGCCTTGC
ACATTATCTTCTGATGAAATGCAAAAGAATAATTTACTCTTGAAATGGTATTTTGACAACAGAC
CACATATTCTCCATGGCGAGTATATTGAATTTCTTTGCAGTGGAGATACTTATATAGTGGAGTC
ATCTATTATCGGGTTGGAGCTTAGAGTACAATGTGACAGAGGACGGTTGAAGTATCCAACATGT
ATTCCAAGGGAAAGGAGTCCGTCTTTTCAAGAACCTTTAAGGACATAAAAATGAATGTCAGAAA
GAAGAATAGTATTTCAACACATCATAAAATCTCTAATGAAACATCATGTTTAGAAGGAATATGT
GGAATTATAAACCTCTAAGTATTGCTTAAAGATTTGATTCTGAATTGCTTCTGTTGGACATTTC
CTTTATTTATGAATAAAAGCCCCAAATGCCATTTCCTTTTTAGTTTGGATGACTGGACACTTGA
TTTAACCATTATTGAATATCTTTCTTTTCATAAAAACTGATCACATCAATTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005375171	(Get FASTA)	NCBI Sequence Viewer
	XP_005375172	(Get FASTA)	NCBI Sequence Viewer
	XP_005375173	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000021209
	ENSCLAP00000021209.1

RefSeq Acc Id:	XP_005375171 ⟸ XM_005375114
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YT20 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLKELAFIIIVMIPGELYAEEKPCGFPTVQNGRIAQYYYTFKSFYFPMTIDTKLSFFCLAGYT AENGKQEGRTRCTTEGWSPEPRCLKKCTKPDLTNGYLADVKLLYKFQENVSYTCASGYKTTGGN DEEVIQCLSEGWSSQPSCTKEHETCLAPELHNGNYSTTQKTFKVKEKVQYECAVGYYTAGGKQS EEAECRTSGWSLTPKCTKLKCTPLRLLENGYFHPVKQTYEEGDVVQFFCHENYYLSGSDLIQCY NFGWYPGSPVCEGRRNRCPPPPLPLNSKIQAYSTSYRHGEIVHVECELNFVIQGSEEIRCENGK WTDPPKCIEAKEKVACEEPPVIANGTANVRSAIYYSGDKVTYSCKSGYRLRGSHEITCSRGKWT LPPECVENNENCKPPPEVINGTITDGLLSSYTTGSSVEYKCNEYYLLKGSKISQCEQGKWSSPP VCLEPCTVDVDYMNRNNIEMKWKYEGKVLHGDLIDFVCKQGFDLSPLTPLSELSVQCNRGEVKY PLCVRKESKGKCAFPPLIKNGVIISSKVDTYENGSSVEYRCFDHYFLQGSKEAYCVEGVWTTPP MCLEPCTLSSDEMQKNNLLLKWYFDNRPHILHGEYIEFLCSGDTYIVESSIIGLELRVQCDRGR LKYPTCIPRERSPSFQEPLRT hide sequence

RefSeq Acc Id:

XP_005375172 ⟸ XM_005375115

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTIDTKLSFFCLAGYTAENGKQEGRTRCTTEGWSPEPRCLKKCTKPDLTNGYLADVKLLYKFQE
NVSYTCASGYKTTGGNDEEVIQCLSEGWSSQPSCTKEHETCLAPELHNGNYSTTQKTFKVKEKV
QYECAVGYYTAGGKQSEEAECRTSGWSLTPKCTKLKCTPLRLLENGYFHPVKQTYEEGDVVQFF
CHENYYLSGSDLIQCYNFGWYPGSPVCEGRRNRCPPPPLPLNSKIQAYSTSYRHGEIVHVECEL
NFVIQGSEEIRCENGKWTDPPKCIEAKEKVACEEPPVIANGTANVRSAIYYSGDKVTYSCKSGY
RLRGSHEITCSRGKWTLPPECVENNENCKPPPEVINGTITDGLLSSYTTGSSVEYKCNEYYLLK
GSKISQCEQGKWSSPPVCLEPCTVDVDYMNRNNIEMKWKYEGKVLHGDLIDFVCKQGFDLSPLT
PLSELSVQCNRGEVKYPLCVRKESKGKCAFPPLIKNGVIISSKVDTYENGSSVEYRCFDHYFLQ
GSKEAYCVEGVWTTPPMCLEPCTLSSDEMQKNNLLLKWYFDNRPHILHGEYIEFLCSGDTYIVE
SSIIGLELRVQCDRGRLKYPTCIPRERSPSFQEPLRT

hide sequence

RefSeq Acc Id:

XP_005375173 ⟸ XM_005375116

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTIDTKLSFFCLAGYTAENGKQEGRTRCTTEGWSPEPRCLKKCTKPDLTNGYLADVKLLYKFQE
NVSYTCASGYKTTGGNDEEVIQCLSEGWSSQPSCTKEHETCLAPELHNGNYSTTQKTFKVKEKV
QYECAVGYYTAGGKQSEEAECRTSGWSLTPKCTKLKCTPLRLLENGYFHPVKQTYEEGDVVQFF
CHENYYLSGSDLIQCYNFGWYPGSPVCEGRRNRCPPPPLPLNSKIQAYSTSYRHGEIVHVECEL
NFVIQGSEEIRCENGKWTDPPKCIEAKEKVACEEPPVIANGTANVRSAIYYSGDKVTYSCKSGY
RLRGSHEITCSRGKWTLPPECVENNENCKPPPEVINGTITDGLLSSYTTGSSVEYKCNEYYLLK
GSKISQCEQGKWSSPPVCLEPCTVDVDYMNRNNIEMKWKYEGKVLHGDLIDFVCKQGFDLSPLT
PLSELSVQCNRGEVKYPLCVRKESKGKCAFPPLIKNGVIISSKVDTYENGSSVEYRCFDHYFLQ
GSKEAYCVEGVWTTPPMCLEPCTLSSDEMQKNNLLLKWYFDNRPHILHGEYIEFLCSGDTYIVE
SSIIGLELRVQCDRGRLKYPTCIPRERSPSFQEPLRT

hide sequence

Ensembl Acc Id:

ENSCLAP00000021209 ⟸ ENSCLAT00000021410

Protein Domains

Sushi

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014527	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000021410	ENTREZGENE
	ENSCLAT00000021410.1	UniProtKB/TrEMBL
Gene3D-CATH	Complement Module, domain 1	UniProtKB/TrEMBL
InterPro	ComplSys_Reg/VirEntry_Med	UniProtKB/TrEMBL
	Sushi/SCR/CCP_sf	UniProtKB/TrEMBL
	Sushi_SCR_CCP_dom	UniProtKB/TrEMBL
NCBI Gene	F13b	ENTREZGENE
PANTHER	COAGULATION FACTOR XIII B CHAIN	UniProtKB/TrEMBL
	COMPLEMENT FACTOR H-RELATED	UniProtKB/TrEMBL
Pfam	Sushi	UniProtKB/TrEMBL
PROSITE	SUSHI	UniProtKB/TrEMBL
SMART	CCP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57535	UniProtKB/TrEMBL
UniProt	A0A8C2YT20	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	F13b	coagulation factor XIII B chain		coagulation factor XIII, B polypeptide	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB