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Gene: F13B (coagulation factor XIII B chain) Chlorocebus sabaeus

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Symbol:

F13B

Name:

coagulation factor XIII B chain

RGD ID:

18678758

Description:

INVOLVED IN blood coagulation (inferred); blood coagulation, fibrin clot formation (inferred); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH cholesteatoma (ortholog); factor XIII deficiency (ortholog); Factor XIII, B Subunit, Deficiency Of (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	32,357,540 - 32,390,349 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	32,357,993 - 32,389,973 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	33,265,712 - 33,296,197 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cholesteatoma (ISO)

factor XIII deficiency (ISO)

Factor XIII, B Subunit, Deficiency Of (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

retinitis pigmentosa 12 (ISO)

thrombosis (ISO)

Venous Thrombosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood coagulation (IEA)

blood coagulation, fibrin clot formation (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

acenocoumarol pharmacodynamics pathway (ISO)

alteplase pharmacodynamics pathway (ISO)

aminocaproic acid pharmacodynamics pathway (ISO)

anistreplase pharmacodynamics pathway (ISO)

aprotinin pharmacodynamics pathway (ISO)

argatroban pharmacodynamics pathway (ISO)

bivalirudin pharmacodynamics pathway (ISO)

coagulation cascade pathway (ISO)

dicoumarol pharmacodynamics pathway (ISO)

enoxaparin pharmacodynamics pathway (ISO)

fondaparinux pharmacodynamics pathway (ISO)

heparin pharmacodynamics pathway (ISO)

phenindione pharmacodynamics pathway (ISO)

reteplase pharmacodynamics pathway (ISO)

tranexamic acid pharmacodynamics pathway (ISO)

warfarin pharmacodynamics pathway (ISO)

References

Genomics

Comparative Map Data

F13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	32,357,540 - 32,390,349 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	32,357,993 - 32,389,973 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	33,265,712 - 33,296,197 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

F13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	197,038,741 - 197,067,260 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	197,038,741 - 197,067,260 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	197,007,871 - 197,036,390 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	195,274,944 - 195,303,020 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	193,739,977 - 193,768,021	NCBI
Celera	1	170,133,795 - 170,161,866 (-)	NCBI		Celera
Cytogenetic Map	1	q31.3	NCBI
HuRef	1	168,165,553 - 168,193,910 (-)	NCBI		HuRef
CHM1_1	1	198,430,602 - 198,458,850 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	196,300,565 - 196,329,084 (-)	NCBI		T2T-CHM13v2.0

F13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	139,429,285 - 139,451,496 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	139,429,440 - 139,451,490 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	139,501,547 - 139,523,758 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	139,501,702 - 139,523,752 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	141,398,284 - 141,420,333 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	141,318,138 - 141,340,167 (+)	NCBI		MGSCv36	mm8
Celera	1	142,138,905 - 142,161,049 (+)	NCBI		Celera
Cytogenetic Map	1	F	NCBI
cM Map	1	61.57	NCBI

F13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	53,681,639 - 53,707,114 (+)	NCBI		GRCr8
mRatBN7.2	13	51,130,908 - 51,156,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	51,130,920 - 51,156,381 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	53,730,358 - 53,753,759 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	55,018,290 - 55,041,691 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	52,293,853 - 52,323,690 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	56,598,891 - 56,623,132 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	56,598,957 - 56,623,124 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	61,616,993 - 61,641,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	52,867,851 - 52,889,426 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	52,881,574 - 52,902,300 (+)	NCBI
Celera	13	51,393,593 - 51,416,193 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

F13b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	33,632,144 - 33,660,535 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	33,633,911 - 33,660,506 (-)	NCBI	ChiLan1.0	ChiLan1.0

F13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	52,319,904 - 52,348,993 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	52,289,056 - 52,318,146 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	172,623,336 - 172,651,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	176,938,155 - 176,965,609 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	176,937,158 - 176,965,773 (-)	Ensembl	panpan1.1		panPan2

F13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	5,674,458 - 5,700,928 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	5,674,416 - 5,700,905 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	5,303,651 - 5,331,440 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	5,370,630 - 5,398,422 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	5,370,530 - 5,396,990 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	5,305,382 - 5,333,161 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	5,406,384 - 5,434,127 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	5,439,496 - 5,467,295 (+)	NCBI		UU_Cfam_GSD_1.0

F13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	77,477,966 - 77,500,748 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936567	6,712,666 - 6,735,539 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

F13B
(Sus scrofa - pig)

No map positions available.

F13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	3,231,462 - 3,274,186 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624798	3,231,592 - 3,261,500 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in F13B
959 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm
1	1	17	18	18

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007989077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007989078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000011676 ⟹ ENSCSAP00000009743

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	32,357,993 - 32,389,973 (+)	Ensembl

RefSeq Acc Id:

XM_007989077 ⟹ XP_007987268

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	32,357,540 - 32,390,349 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	33,265,712 - 33,296,197 (+)	NCBI

Sequence:

show sequence

TTTATCATTGAAACAATATGGTTCTATATCTCTTTAAGGAGTGCAATCTAGGCAACAACGTATT
TCAACATCAGGTATCCATTATCTCATGTTCCTAAGTTCAACTTTTTACCTGATCAATATTAGTA
AAGATTCATGGCCTCAAGTGAACTTTATGAATTGGCAATTGGGAACTTAGGTTGAAAATTTACC
TAGTTTTTTTATGCAGCCTGTGTTAATTATTTATTCTGTTGCTATTGTTGCCCTAATCAGTTAT
AATACTCTTACTGGACTCTGGCATGATAAGTAATGTCAATTAATATAGTTATGTTATTTTAACA
TTATTTCAAAATATTTTAAGTGAAATGTATGACTCATTACAAAAGGACTTAGAGAGAGGTTATA
AATTATTAACTTTTTCCTCAAGAGAAGTATTGTGTACTTAATGACAAGTTCCTAGTGCTTTAGA
ATTGTTAAAATCTTTGTGAAGCACACCACTGAAGATGAGGTTGAAAATCCTGACTTTTATCATC
ATATTGATAATCTCAGGAGAACTCTATGCAGAAGAGAAACCCTGTGGTTTTCCTCATGTGGAAA
ATGGAAGAATTGCCCAATATTACTATATTTTTAAAAGCTATTACTTTCCAATGAGCATAGACCA
AAAATTGTCATTTTTCTGCTTGGCTGGTTATACCACCGAAAGTGGAAGACAAGAAGAGCGAACC
ACGTGTACAACAGAAGGCTGGTCTCCAGAGCCAAGGTGCTTCAAAAAATGCACTAAGCCTGACC
TGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGAGTTATGG
TTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGAT
GGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATGAAACATGTTTGGCTCCTGAATTATATA
ATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGACAAAGTACAATACGAATGTGC
TACTGGCTACTACACAGCCGGAGGAAAGAAGACAGAGGAGGTAGAATGTCTCACATACGGATGG
TCTCTCACACCAAAATGTACCAAATTAAAGTGCCCTTCTTTAAGATTAATTGAAAATGGTTATT
TTCATCCTGTAAAGCAAACCTATGAAGAAGGAGATGTCATTCAGTTTTTCTGTCATGAAAATTA
TTATCTAAGTGGATCTGATTTAATTCAATGCTATAACTTTGGTTGGTACCCAGAATCTCCTGTA
TGCGAAGGAAGAAGAAACAGATGTCCTCCTCCACCTCTGCCTATAAACTCCAAAATTCAAACAC
ATTCAACAACTTATCGTCATGGAGAAATAGTTCGTATAGAATGTGAACTAAATTTTGTGATCCA
TGGGTCAGAAGAAATACGTTGTGAAAATGGAAAATGGACAGAACCTCCAAAATGCATTGAAGGA
CAGGAGAGGGTAGCCTGTGAGGAACCACCCTTCATTGAAAATGGTACAGCAAATATACACTCTA
AGATTTATTACAATGGGGATAAAGTGACATATGCATGTAAAAGGGGCTACCTTCTCCGTGGATC
AAATGAGATAACTTGTAATCATGGAAAATGGACACTTGCTCCTGAGTGTGTTGAAAATAATGAG
AATTGTAAGCATCCTCCTGTTGTAATGAATGGGGCTGTTGCTGATGGGTTACTGGCAAGCTATG
CAGCAGGATCTTCCGTGGAATATAGATGTAATGAATATTACTTGCTGAGGGGATCAAAAATATC
TCGTTGTGAACAAGGAAAATGGTCATCCCCACCTGTTTGCTTGGAGCCATGTACTGTTAATGTG
GATTACATGAACAGAAATAACATAGAGATGAAGTGGAAATATGAAGGGAAAGTCTTACATGGAG
ATTTAATAGATTTTGTATGTAAACAGGGATATGACTTATCTCCGTTAACCCCACTGTCTGAATT
ATCTGTGCAGTGCAACAGAGGAGAAGTGAAATATCCTTTATGTACTAGAAAAGAATCTAAAGGA
ATGTGCACATCTCCTCCACTTATTAAACATGGAGACATTATCAGTTCAATAGTAGACACCTATG
AAAATGGCTCTTCAGTAGAATACAGATGTTTTGATCACCATTTCCTACAAGGATCTAGGGAGGC
CTATTGTTTAGAGGGAACGTGGACTACACCACCATTGTGTTTAGAGCCATGCACATTATCTTTT
ACTGAAATGGAAAAGAATAATTTACTTCTGAAATGGGATTTTGACAATAGACCACATATTTTGC
ATGGTGAATATGTTGAGTTTATTTGTAGAGGAGATACTTATCCAGCTGAATTATATATTACTGG
ATCTATACTTAGAATGCAATGTGACAGAGGGCAGTTAAAATATCCAAGATGTATTCCAAGACAA
AGCTAAGAAGTGGCTTTCACCTATAGGACTCTGTCTTATCAAGAACCCTTAAGAACATAGAATT
GAATGGCAGAAAGAGGAGTCATATTTCAATATATCATGAAATTCCTTATAAAACATAATTTTGA
AGAAGTATGTTAAGTTAAAAACTTCTGAGTTTTTCCTTGCTTAAATATTTGAATCTAAGTTGTT
TGTGCTGAACATTTCTTTATTTATAAATAAAAACCAATAAATGTTGTTTAACTTTTAGTTTGTA
TAATTTGATGTAGAATGTAATCTCTTTTGTATGTCTTCCATATGTTACAAATTAATCTACACAT
CAAAATATTTTCATTTCCTAATGCCCATTGACTAGACTATATCATTGTTTTCAATATACTGTAT
GTGTAAAAATTTTACATTCATATTCATTATCACTTTTATTAATATTAAGGCTTTTGTTACCCAT
AATTCAAAGTTTATGTCAATATTAAAGGGCCAAACACACTAGAGATAAGAAACTATATGCTGTA
TTAGAGAATCTGCTTTATTAAAGACAGAAGAGACTGCCCTTCGGACTTTCTAAATGTAAAAATA
CTTTTAAAATTAACTGTAATATTTGTTACCAGGTTAATAACCAAATTGTTTATGAGGTAGTATA
CTACCATATTTGAACATGTGCTCAAATATTGTTAAAGAGACACAGTTAAAGAAAGAATGACTCT
TGGAATTTTATTTTATTTATTTATTTATTTATTTTGAGATGGAGTCTCCTTCTGTTGCCCAGAC
TAGAGTGCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007987268	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009743.1

RefSeq Acc Id:	XP_007987268 ⟸ XM_007989077
- UniProtKB:	A0A0D9RMA4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000009743 ⟸ ENSCSAT00000011676

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000013580	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000011676.1	UniProtKB/TrEMBL
Gene3D-CATH	Complement Module, domain 1	UniProtKB/TrEMBL
InterPro	ComplSys_Reg/VirEntry_Med	UniProtKB/TrEMBL
	Sushi/SCR/CCP_sf	UniProtKB/TrEMBL
	Sushi_SCR_CCP_dom	UniProtKB/TrEMBL
KEGG Report	csab:103230379	UniProtKB/TrEMBL
NCBI Gene	F13B	ENTREZGENE
PANTHER	COAGULATION FACTOR XIII B CHAIN	UniProtKB/TrEMBL
	COMPLEMENT FACTOR H-RELATED	UniProtKB/TrEMBL
Pfam	Sushi	UniProtKB/TrEMBL
PROSITE	SUSHI	UniProtKB/TrEMBL
SMART	CCP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57535	UniProtKB/TrEMBL
UniProt	A0A0D9RMA4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB