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Gene: Rpl10l (ribosomal protein L10 like) Chinchilla lanigera

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Symbol:

Rpl10l

Name:

ribosomal protein L10 like

RGD ID:

9017534

Description:

ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN male meiosis I (ortholog); ribosomal large subunit assembly (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Intellectual Developmental Disorder with Dysmorphic Facies and Ptosis (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); cytosolic large ribosomal subunit (ortholog); endoplasmic reticulum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

60S ribosomal protein L10-like; ribosomal protein L10-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	15,612,198 - 15,612,842 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	15,612,118 - 15,613,056 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpl10l	Chinchilla	Brain-Lung-Thyroid Syndrome		ISO	RPL10L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Brain-lung-thyroid syndrome	ClinVar	PMID:25741868
Rpl10l	Chinchilla	Intellectual Developmental Disorder with Dysmorphic Facies and Ptosis		ISO	RPL10L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual developmental disorder with dysmorphic facies and ptosis	ClinVar
Rpl10l	Chinchilla	prostate cancer		ISO	RPL10L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Malignant tumor of prostate	ClinVar	PMID:23265383
Rpl10l	Chinchilla	spermatogenic failure 4		ISO	RPL10L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spermatogenesis maturation arrest	ClinVar	PMID:32111475
Rpl10l	Chinchilla	spermatogenic failure 63		ISO	RPL10L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spermatogenic failure 63	ClinVar	PMID:32111475

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpl10l	Chinchilla	spermatogenic failure 63		ISO	RPL10L (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpl10l	Chinchilla	male meiosis I	involved_in	ISO	Rpl10l (Mus musculus)	9068941	PMID:28502657	UniProt	PMID:28502657
Rpl10l	Chinchilla	ribosomal large subunit assembly	involved_in	ISO	Rpl10l (Mus musculus)	9068941	PMID:28502657	UniProt	PMID:28502657
Rpl10l	Chinchilla	spermatogenesis	involved_in	ISO	Rpl10l (Mus musculus)	9068941	PMID:28502657	UniProt	PMID:28502657
Rpl10l	Chinchilla	spermatogenesis	involved_in	ISO	RPL10L (Homo sapiens)	9068941	PMID:32111475	UniProt	PMID:32111475
Rpl10l	Chinchilla	spermatogenesis	involved_in	ISO	RPL10L (Homo sapiens)	9068941	PMID:12490704	UniProt	PMID:12490704

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpl10l	Chinchilla	cytosol	located_in	ISO	RPL10L (Homo sapiens)	9068941		HPA	GO_REF:0000052
Rpl10l	Chinchilla	cytosolic large ribosomal subunit	part_of	ISO	RPL10L (Homo sapiens)	9068941	PMID:25901680 and PMID:32669547	UniProt	PMID:25901680 and PMID:32669547
Rpl10l	Chinchilla	cytosolic large ribosomal subunit	part_of	ISO	Rpl10l (Mus musculus)	9068941	PMID:23500592 and PMID:36517592	MGI	PMID:23500592 and PMID:36517592
Rpl10l	Chinchilla	endoplasmic reticulum	located_in	ISO	RPL10L (Homo sapiens)	9068941		HPA	GO_REF:0000052
Rpl10l	Chinchilla	nucleus	located_in	ISO	RPL10L (Homo sapiens)	9068941		LIFEdb	GO_REF:0000054
Rpl10l	Chinchilla	ribosome	part_of	ISO	RPL10L (Homo sapiens)	9068941	PMID:25901680	UniProt	PMID:25901680

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpl10l	Chinchilla	structural constituent of ribosome	enables	ISO	RPL10L (Homo sapiens)	9068941	PMID:25901680 and PMID:32669547	UniProt	PMID:25901680 and PMID:32669547
Rpl10l	Chinchilla	structural constituent of ribosome	enables	ISO	Rpl10l (Mus musculus)	9068941	PMID:36517592	UniProt	PMID:36517592
Rpl10l	Chinchilla	structural constituent of ribosome	enables	ISO	Rpl10l (Mus musculus)	9068941	PMID:28502657	UniProt	PMID:28502657

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074	PMID:30032202

Rpl10l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	15,612,198 - 15,612,842 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	15,612,118 - 15,613,056 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL10L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	46,651,010 - 46,651,781 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	46,651,010 - 46,651,781 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	47,120,213 - 47,120,984 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	46,189,966 - 46,190,778 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	46,189,971 - 46,190,778	NCBI
Celera	14	26,980,729 - 26,981,541 (-)	NCBI		Celera
Cytogenetic Map	14	q21.2	NCBI
HuRef	14	27,238,030 - 27,238,842 (-)	NCBI		HuRef
CHM1_1	14	47,059,057 - 47,059,869 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	40,849,826 - 40,850,597 (-)	NCBI		T2T-CHM13v2.0

Rpl10l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	66,330,153 - 66,331,175 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	66,330,153 - 66,331,175 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	66,283,379 - 66,284,401 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	66,283,379 - 66,284,401 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	67,384,366 - 67,385,388 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	67,201,984 - 67,203,006 (-)	NCBI		MGSCv36	mm8
Celera	12	67,414,601 - 67,415,626 (-)	NCBI		Celera
Cytogenetic Map	12	C2	NCBI
cM Map	12	27.44	NCBI

Rpl10l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	90,280,962 - 90,281,982 (-)	NCBI		GRCr8
mRatBN7.2	6	84,544,771 - 84,545,791 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	84,543,540 - 84,545,816 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	84,906,496 - 84,907,516 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	85,205,875 - 85,206,895 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	84,646,915 - 84,647,935 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	88,231,273 - 88,232,549 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	88,231,611 - 88,232,252 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	97,714,374 - 97,715,479 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	87,930,206 - 87,930,850 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	87,933,655 - 87,934,326 (-)	NCBI
Celera	6	83,085,786 - 83,087,061 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

RPL10L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	47,796,895 - 47,799,297 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	47,013,404 - 47,015,806 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	27,254,150 - 27,255,381 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	45,564,997 - 45,565,806 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	45,565,079 - 45,565,723 (-)	Ensembl	panpan1.1		panPan2

RPL10L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	23,671,961 - 23,673,085 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	23,672,388 - 23,673,032 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	23,490,753 - 23,491,877 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	23,839,122 - 23,840,246 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	23,839,549 - 23,840,193 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	23,497,887 - 23,499,011 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	23,566,395 - 23,567,518 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	23,895,275 - 23,896,399 (-)	NCBI		UU_Cfam_GSD_1.0

Rpl10l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	55,712,572 - 55,713,407 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936583	2,975,604 - 2,976,248 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936583	2,975,604 - 2,976,248 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL10L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	176,603,248 - 176,603,892 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	176,603,177 - 176,604,116 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	196,774,230 - 196,775,074 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL10L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	23,667,440 - 23,669,041 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	23,668,304 - 23,668,948 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	12,054,368 - 12,055,219 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl10l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	21,941,818 - 21,942,462 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	21,941,646 - 21,944,165 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005376851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01009684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01049589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000026200 ⟹ ENSCLAP00000025896

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955409	15,612,198 - 15,612,842 (+)	Ensembl

RefSeq Acc Id:

XM_005376851 ⟹ XP_005376908

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955409	15,612,118 - 15,613,056 (+)	NCBI

Sequence:

show sequence

AGAGTGATGGGTAACGGATATAAAGTGCGGTTTGCGCAGGCGCGCCCCTCAGACGTTTGGCTGAGGTTCCGGTCGCTACTATGGGTCGCCGTCCTGCTCGCTGTTACCGTTACTGTAAGAACAAGCCG
TACCCGAAGTCCCGCTTCTGCCGAGGGGTCCCGAATGCGAAGATTCACATCTTTGACCTGGGTCGGAAGAAGGCAAAAGTGGACGAATTCCCACTGTGCGCCCACATGGTGTCGGGTGAATATGAGCA
GCTCTCCTCCGAAGCCCTGGAGGCCGCCCGTATCTGTGCCAACAAGTACATGGTGAAAACGTGCGGCAAAGATGGCTTCCACATCCGGGTACGGCTCCATCCCTTCCACGTCATCCGCATCAACAAGA
TGTTGTCGTGTGCGGGAGCTGACAGGCTGCAGACGGGCATGCGCGGCGCCTTTGGGAAACCCCAGGGTACTGTAGCCAGGGTCCATATTGGCCAGGTCATCATGTCCATCCGCACCAAGGTGCTGAAC
AAGAAGCACGTGATCGAAGCCTTGCGCAGGGCCAAATTCAAGTTCCCTGGACGCCAGAAAATCCATATCTCCAAGAAGTGGGGCTTTACCAAGTATAATGCTGATCAATTCGAAGAACAGATGGCTAT
GAAGCGCCTCCTCCCTGATGGTTGCGGAGTCAAGTACGTCCCCAGTCGTGGCTGTTTGGACAAGTGGCGGGCACTGTGCTCCTGAAGGCTTCTCTGGACCACGGTTCTCTGGACCACGGTTCCCTGGA
CCCTCAGTGGGACTTAAGTTTGACAATAAATTCTCCTCGCTGGCAAAAAACACCAAAAAAACAAAAAAAAAAATTGTAAAAAAAAATTGGTAAAAAATAGTTACCCAATTTTAGATTGTAGAATGCTG
GAGAAATAATATTTATGTTAATACAACATGTTTTAATGGAGAA

hide sequence


Protein RefSeqs	XP_005376908	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004375.1
	ENSCLAP00000025896
	ENSCLAP00000025896.1

RefSeq Acc Id:

XP_005376908 ⟸ XM_005376851

- UniProtKB:

A0A8C2WBG7 (UniProtKB/TrEMBL), A0A8C2UQJ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRRPARCYRYCKNKPYPKSRFCRGVPNAKIHIFDLGRKKAKVDEFPLCAHMVSGEYEQLSSEALEAARICANKYMVKTCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAR
VHIGQVIMSIRTKVLNKKHVIEALRRAKFKFPGRQKIHISKKWGFTKYNADQFEEQMAMKRLLPDGCGVKYVPSRGCLDKWRALCS

hide sequence

Ensembl Acc Id:

ENSCLAP00000025896 ⟸ ENSCLAT00000026200

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003108	UniProtKB/TrEMBL
	ENSCLAG00000018026	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004458.1	UniProtKB/TrEMBL
	ENSCLAT00000026200	ENTREZGENE
	ENSCLAT00000026200.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.60.300	UniProtKB/TrEMBL
	3.90.1170.10	UniProtKB/TrEMBL
InterPro	Ribosomal_L10e	UniProtKB/TrEMBL
	Ribosomal_L10e/L16	UniProtKB/TrEMBL
	Ribosomal_L10e/L16_sf	UniProtKB/TrEMBL
	Ribosomal_L10e_CS	UniProtKB/TrEMBL
	Ribosomal_uL16	UniProtKB/TrEMBL
NCBI Gene	Rpl10l	ENTREZGENE
PANTHER	PTHR11726	UniProtKB/TrEMBL
Pfam	Ribosomal_L16	UniProtKB/TrEMBL
PIRSF	Ribosomal_L10	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L10E	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54686	UniProtKB/TrEMBL
UniProt	A0A8C2UQJ7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2WBG7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Rpl10l	ribosomal protein L10 like		ribosomal protein L10-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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