RPL10L (ribosomal protein L10 like) - Rat Genome Database

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Gene: RPL10L (ribosomal protein L10 like) Canis lupus familiaris
Analyze
Symbol: RPL10L
Name: ribosomal protein L10 like
RGD ID: 12058322
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN male meiosis I (inferred); spermatogenesis (inferred); translation (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Dysmorphic Facies and Ptosis (ortholog); FOUND IN ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L10-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1823,671,961 - 23,673,085 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl823,672,388 - 23,673,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha823,490,753 - 23,491,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0823,839,122 - 23,840,246 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl823,839,549 - 23,840,193 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1823,497,887 - 23,499,011 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0823,566,395 - 23,567,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0823,895,275 - 23,896,399 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL10L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1823,671,961 - 23,673,085 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl823,672,388 - 23,673,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha823,490,753 - 23,491,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0823,839,122 - 23,840,246 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl823,839,549 - 23,840,193 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1823,497,887 - 23,499,011 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0823,566,395 - 23,567,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0823,895,275 - 23,896,399 (-)NCBIUU_Cfam_GSD_1.0
RPL10L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381446,651,010 - 46,651,781 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1446,651,010 - 46,651,781 (-)EnsemblGRCh38hg38GRCh38
GRCh371447,120,213 - 47,120,984 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361446,189,966 - 46,190,778 (-)NCBINCBI36Build 36hg18NCBI36
Build 341446,189,971 - 46,190,778NCBI
Celera1426,980,729 - 26,981,541 (-)NCBICelera
Cytogenetic Map14q21.2NCBI
HuRef1427,238,030 - 27,238,842 (-)NCBIHuRef
CHM1_11447,059,057 - 47,059,869 (-)NCBICHM1_1
T2T-CHM13v2.01440,849,826 - 40,850,597 (-)NCBIT2T-CHM13v2.0
Rpl10l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391266,330,153 - 66,331,175 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1266,330,153 - 66,331,175 (-)EnsemblGRCm39 Ensembl
GRCm381266,283,379 - 66,284,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1266,283,379 - 66,284,401 (-)EnsemblGRCm38mm10GRCm38
MGSCv371267,384,366 - 67,385,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361267,201,984 - 67,203,006 (-)NCBIMGSCv36mm8
Celera1267,414,601 - 67,415,626 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1227.44NCBI
Rpl10l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8690,280,962 - 90,281,982 (-)NCBIGRCr8
mRatBN7.2684,544,771 - 84,545,791 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl684,543,540 - 84,545,816 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx684,906,496 - 84,907,516 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0685,205,875 - 85,206,895 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0684,646,915 - 84,647,935 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0688,231,273 - 88,232,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl688,231,611 - 88,232,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0697,714,374 - 97,715,479 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4687,930,206 - 87,930,850 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1687,933,655 - 87,934,326 (-)NCBI
Celera683,085,786 - 83,087,061 (-)NCBICelera
Cytogenetic Map6q24NCBI
Rpl10l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540915,612,198 - 15,612,842 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540915,612,118 - 15,613,056 (+)NCBIChiLan1.0ChiLan1.0
RPL10L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21547,796,895 - 47,799,297 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11447,013,404 - 47,015,806 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01427,254,150 - 27,255,381 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11445,564,997 - 45,565,806 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1445,565,079 - 45,565,723 (-)Ensemblpanpan1.1panPan2
Rpl10l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864055,712,572 - 55,713,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365832,975,604 - 2,976,248 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365832,975,604 - 2,976,248 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1176,603,248 - 176,603,892 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11176,603,177 - 176,604,116 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21196,774,230 - 196,775,074 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL10L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12423,667,440 - 23,669,041 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2423,668,304 - 23,668,948 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605312,054,368 - 12,055,219 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl10l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473121,941,818 - 21,942,462 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473121,941,646 - 21,944,165 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL10L
47 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 2 2 3 1 3
Below cutoff 3 4 13 5 3 5 3 3 10 7 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000022457   ⟹   ENSCAFP00000043112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl823,672,388 - 23,673,032 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003525   ⟹   ENSCAFP00845002798
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl823,839,549 - 23,840,193 (-)Ensembl
RefSeq Acc Id: XM_038484462   ⟹   XP_038340390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1823,497,887 - 23,499,011 (-)NCBI
RefSeq Acc Id: XM_038544033   ⟹   XP_038399961
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0823,895,275 - 23,896,399 (-)NCBI
RefSeq Acc Id: XM_038608160   ⟹   XP_038464088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0823,566,395 - 23,567,518 (-)NCBI
RefSeq Acc Id: XM_038672961   ⟹   XP_038528889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0823,839,122 - 23,840,246 (-)NCBI
RefSeq Acc Id: XM_547794   ⟹   XP_547794
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1823,671,961 - 23,673,085 (-)NCBI
Dog10K_Boxer_Tasha823,490,753 - 23,491,877 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_547794   ⟸   XM_547794
- UniProtKB: A0A8C0LZJ8 (UniProtKB/TrEMBL),   A0A8I3MKJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000043112   ⟸   ENSCAFT00000022457
RefSeq Acc Id: XP_038340390   ⟸   XM_038484462
RefSeq Acc Id: XP_038464088   ⟸   XM_038608160
RefSeq Acc Id: XP_038528889   ⟸   XM_038672961
- UniProtKB: A0A8C0LZJ8 (UniProtKB/TrEMBL),   A0A8I3MKJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399961   ⟸   XM_038544033
- UniProtKB: A0A8C0LZJ8 (UniProtKB/TrEMBL),   A0A8I3MKJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002798   ⟸   ENSCAFT00845003525

Promoters
RGD ID:13684191
Promoter ID:EPDNEW_C2259
Type:initiation region
Name:RPL10L_1
Description:ribosomal protein L10 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1823,673,072 - 23,673,132EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014147 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000816 UniProtKB/TrEMBL
  ENSCAFG00040002316 UniProtKB/TrEMBL
  ENSCAFG00845002023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022457.2 UniProtKB/TrEMBL
  ENSCAFT00030001395.1 UniProtKB/TrEMBL
  ENSCAFT00040004395.1 UniProtKB/TrEMBL
  ENSCAFT00845003525 ENTREZGENE
  ENSCAFT00845003525.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.300 UniProtKB/TrEMBL
  3.90.1170.10 UniProtKB/TrEMBL
InterPro Ribosomal_L10e UniProtKB/TrEMBL
  Ribosomal_L10e/L16 UniProtKB/TrEMBL
  Ribosomal_L10e/L16_sf UniProtKB/TrEMBL
  Ribosomal_L10e_CS UniProtKB/TrEMBL
  Ribosomal_uL16 UniProtKB/TrEMBL
KEGG Report cfa:490672 UniProtKB/TrEMBL
NCBI Gene RPL10L ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE UniProtKB/TrEMBL
  PTHR11726 UniProtKB/TrEMBL
Pfam Ribosomal_L16 UniProtKB/TrEMBL
PIRSF Ribosomal_L10 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L10E UniProtKB/TrEMBL
Superfamily-SCOP SSF54686 UniProtKB/TrEMBL
UniProt A0A8C0LZJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MKJ0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:51679 ENTREZGENE