RPL10L (ribosomal protein L10 like)

Gene: RPL10L (ribosomal protein L10 like) Sus scrofa

Analyze

Symbol:

RPL10L

Name:

ribosomal protein L10 like

RGD ID:

14082773

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN male meiosis I (inferred); spermatogenesis (inferred); translation (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Dysmorphic Facies and Ptosis (ortholog); FOUND IN ribosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

60S ribosomal protein L10-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	176,603,248 - 176,603,892 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	176,603,177 - 176,604,116 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	196,774,230 - 196,775,074 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

Intellectual Developmental Disorder with Dysmorphic Facies and Ptosis (ISO)

prostate cancer (ISO)

spermatogenic failure 4 (ISO)

spermatogenic failure 63 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

male meiosis I (IEA)

spermatogenesis (IEA)

translation (IEA)

Cellular Component

cytosol (IEA)

cytosolic large ribosomal subunit (IBA,IEA)

endoplasmic reticulum (IEA)

large ribosomal subunit (IEA)

nucleus (IEA)

ribonucleoprotein complex (IEA)

ribosome (IEA,ISO)

Molecular Function

structural constituent of ribosome (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RPL10L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	176,603,248 - 176,603,892 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	176,603,177 - 176,604,116 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	196,774,230 - 196,775,074 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL10L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	46,651,010 - 46,651,781 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	46,651,010 - 46,651,781 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	47,120,213 - 47,120,984 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	46,189,966 - 46,190,778 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	46,189,971 - 46,190,778	NCBI
Celera	14	26,980,729 - 26,981,541 (-)	NCBI		Celera
Cytogenetic Map	14	q21.2	NCBI
HuRef	14	27,238,030 - 27,238,842 (-)	NCBI		HuRef
CHM1_1	14	47,059,057 - 47,059,869 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	40,849,826 - 40,850,597 (-)	NCBI		T2T-CHM13v2.0

Rpl10l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	66,330,153 - 66,331,175 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	66,330,153 - 66,331,175 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	66,283,379 - 66,284,401 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	66,283,379 - 66,284,401 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	67,384,366 - 67,385,388 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	67,201,984 - 67,203,006 (-)	NCBI		MGSCv36	mm8
Celera	12	67,414,601 - 67,415,626 (-)	NCBI		Celera
Cytogenetic Map	12	C2	NCBI
cM Map	12	27.44	NCBI

Rpl10l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	90,280,962 - 90,281,982 (-)	NCBI		GRCr8
mRatBN7.2	6	84,544,771 - 84,545,791 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	84,543,540 - 84,545,816 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	84,906,496 - 84,907,516 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	85,205,875 - 85,206,895 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	84,646,915 - 84,647,935 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	88,231,273 - 88,232,549 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	88,231,611 - 88,232,252 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	97,714,374 - 97,715,479 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	87,930,206 - 87,930,850 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	87,933,655 - 87,934,326 (-)	NCBI
Celera	6	83,085,786 - 83,087,061 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Rpl10l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	15,612,198 - 15,612,842 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	15,612,118 - 15,613,056 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL10L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	47,796,895 - 47,799,297 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	47,013,404 - 47,015,806 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	27,254,150 - 27,255,381 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	45,564,997 - 45,565,806 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	45,565,079 - 45,565,723 (-)	Ensembl	panpan1.1		panPan2

RPL10L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	23,671,961 - 23,673,085 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	23,672,388 - 23,673,032 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	23,490,753 - 23,491,877 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	23,839,122 - 23,840,246 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	23,839,549 - 23,840,193 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	23,497,887 - 23,499,011 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	23,566,395 - 23,567,518 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	23,895,275 - 23,896,399 (-)	NCBI		UU_Cfam_GSD_1.0

Rpl10l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	55,712,572 - 55,713,407 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936583	2,975,604 - 2,976,248 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936583	2,975,604 - 2,976,248 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL10L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	23,667,440 - 23,669,041 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	23,668,304 - 23,668,948 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	12,054,368 - 12,055,219 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl10l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	21,941,818 - 21,942,462 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	21,941,646 - 21,944,165 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RPL10L
22 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003121787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU041312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000005516 ⟹ ENSSSCP00000005379

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	176,603,248 - 176,603,892 (-)	Ensembl

RefSeq Acc Id:

XM_003121787 ⟹ XP_003121835

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	176,603,177 - 176,604,116 (-)	NCBI

Sequence:

show sequence

AGGAGAATAAACCCCTCCGCCTTTCTGCTCTGCGCATGTGCCGTGTCTCCCACACGCATGCTTA
GAGAGTCATTGCATCTATGGTAGAGACATTGTGAAAGAACGCCCTCACATCCTCTATGGTTTCC
TTGTGGGGAGATAGGCAATGTATAGAGGGTGCATGCGCAAACAAACGTAGAAGGAAACCGTCTC
CTCAACTCACCGCAGAGATTTCAGGTGTTGCCATGGGCCGCCGTCCTGCTCGTTGTTACCGGTA
TTGCAAGAATAAGCCGTATCCAAAGTCACGCTTCTGCCGAGGAGTCCCTGATGCCAAGATCCGC
ATCTTTGACCTGGGTCGGAAGAAGGCAAAAGTGGATGAATTCCCGCTCTGTGGCCACATGGTGT
CTGATGAATATGAGCAGCTCTCTTCTGAAGCCCTGGAGGCCGCCCGAATTTGTGCCAACAAGTA
TATGGTGAAAAGTTGTGGCAAAGATGGCTATCACATCCGAGTGCGGCTCCATCCGTTCCATGTT
ATCCGCATCAACAAGATGTTGTCCTGTGCTGGGGCTGACAGGCTCCAGACAGGTATGCGAGGTG
CCTTTGGAAAGCCTCAGGGTACAGTGGCCAGAGTCCACATCGGTCAAGTCATCATGTCCATCCG
CACCAAGCTTCAGAACAAGGAACATGTGATTGAAGCCTTACGCAGGGCCAAGTTCAAGTTCCCT
GGGCGCCAGAAGATTCACATCTCCAAGAAATGGGGCTTTACCAAGTTCAACACTGATGAATTTG
AAGACAAAGTGGCTAAGAAGTGCCTCATCCCAGATGGTTGTGGAGTTAAATACGTCCCCAGTCG
TGGCCCTCTGGACAAGTGGCGAGTTCTGCATTCGTGACATCTTGGACAGCACTGCCAACTTGGC
CAAGCTGGTCTGACTTTTGCTTAACAATAAATTTTATTTACTGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003121835	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000005379.2
	ENSSSCP00005022999.1
	ENSSSCP00015028900.1
	ENSSSCP00025006726.1
	ENSSSCP00030045397.1
	ENSSSCP00035030485.1
	ENSSSCP00040031650.1
	ENSSSCP00045033287.1
	ENSSSCP00050025265.1
	ENSSSCP00055044604.1
	ENSSSCP00060016932.1
	ENSSSCP00065013960.1
	ENSSSCP00070002511.1

RefSeq Acc Id:

XP_003121835 ⟸ XM_003121787

- UniProtKB:

A0A4X1SJJ5 (UniProtKB/TrEMBL), A0A8D0J4P8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVSLWGDRQCIEGACANKRRRKPSPQLTAEISGVAMGRRPARCYRYCKNKPYPKSRFCRGVPDA
KIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGYHIRVRLHP
FHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKF
KFPGRQKIHISKKWGFTKFNTDEFEDKVAKKCLIPDGCGVKYVPSRGPLDKWRVLHS

hide sequence

RefSeq Acc Id:

ENSSSCP00000005379 ⟸ ENSSSCT00000005516

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000005001	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00005023745	UniProtKB/TrEMBL
	ENSSSCG00015054114	UniProtKB/TrEMBL
	ENSSSCG00025012729	UniProtKB/TrEMBL
	ENSSSCG00030070518	UniProtKB/TrEMBL
	ENSSSCG00035056199	UniProtKB/TrEMBL
	ENSSSCG00040054572	UniProtKB/TrEMBL
	ENSSSCG00045028135	UniProtKB/TrEMBL
	ENSSSCG00050043298	UniProtKB/TrEMBL
	ENSSSCG00055028196	UniProtKB/TrEMBL
	ENSSSCG00060029564	UniProtKB/TrEMBL
	ENSSSCG00065025197	UniProtKB/TrEMBL
	ENSSSCG00070001638	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000005516.3	UniProtKB/TrEMBL
	ENSSSCT00005037573.1	UniProtKB/TrEMBL
	ENSSSCT00015072055.1	UniProtKB/TrEMBL
	ENSSSCT00025016839.1	UniProtKB/TrEMBL
	ENSSSCT00030098622.1	UniProtKB/TrEMBL
	ENSSSCT00035075015.1	UniProtKB/TrEMBL
	ENSSSCT00040073866.1	UniProtKB/TrEMBL
	ENSSSCT00045047910.1	UniProtKB/TrEMBL
	ENSSSCT00050058907.1	UniProtKB/TrEMBL
	ENSSSCT00055055868.1	UniProtKB/TrEMBL
	ENSSSCT00060039941.1	UniProtKB/TrEMBL
	ENSSSCT00065033715.1	UniProtKB/TrEMBL
	ENSSSCT00070003048.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.60.300	UniProtKB/TrEMBL
	3.90.1170.10	UniProtKB/TrEMBL
InterPro	Ribosomal_L10e	UniProtKB/TrEMBL
	Ribosomal_L10e/L16	UniProtKB/TrEMBL
	Ribosomal_L10e/L16_sf	UniProtKB/TrEMBL
	Ribosomal_L10e_CS	UniProtKB/TrEMBL
	Ribosomal_uL16	UniProtKB/TrEMBL
NCBI Gene	RPL10L	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L10	UniProtKB/TrEMBL
	60S RIBOSOMAL PROTEIN L10-LIKE	UniProtKB/TrEMBL
	PTHR11726	UniProtKB/TrEMBL
Pfam	Ribosomal_L16	UniProtKB/TrEMBL
PIRSF	Ribosomal_L10	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L10E	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54686	UniProtKB/TrEMBL
UniProt	A0A4X1SJJ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0J4P8	ENTREZGENE, UniProtKB/TrEMBL
	F1SI10_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:103163	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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