Ccdc88a (coiled-coil domain containing 88A) - Rat Genome Database

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Gene: Ccdc88a (coiled-coil domain containing 88A) Chinchilla lanigera
Analyze
Symbol: Ccdc88a
Name: coiled-coil domain containing 88A
RGD ID: 9013245
Description: ENCODES a protein that exhibits actin binding (ortholog); epidermal growth factor receptor binding (ortholog); G-protein alpha-subunit binding (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); cell migration (ortholog); lamellipodium assembly (ortholog); ASSOCIATED WITH microcephaly (ortholog); PEHO syndrome (ortholog); PEHO-like syndrome (ortholog); FOUND IN cell leading edge (ortholog); centriole (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: girdin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,617,833 - 27,771,385 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ccdc88aChinchillamicrocephaly  ISORGD:13478018554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868
Ccdc88aChinchillaPEHO syndrome  ISORGD:13478018554872ClinVar Annotator: match by term: PEHO syndromeClinVarPMID:28492532
Ccdc88aChinchillaPEHO-like syndrome  ISORGD:13478018554872ClinVar Annotator: match by term: CCDC88A-related condition | ClinVar Annotator: match by term: PEHO-like syndromeClinVarPMID:25741868|PMID:26917597|PMID:28492532|PMID:30392057|PMID:37798908|PMID:39334473
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ccdc88aChinchillaPEHO-like syndrome  ISORGD:13478017240710 OMIM 


Biological Process
1 to 15 of 15 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ccdc88aChinchillaactivation of protein kinase activity involved_inISORGD:13478019068941 PMID:21954290UniProtPMID:21954290
Ccdc88aChinchillacell migration involved_inISORGD:13478019068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillalamellipodium assembly involved_inISORGD:13478019068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillamaintenance of protein location in plasma membrane involved_inISORGD:13478019068941 PMID:20462955UniProtPMID:20462955
Ccdc88aChinchillamembrane organization involved_inISORGD:13478019068941 PMID:15882442UniProtPMID:15882442
Ccdc88aChinchillapositive regulation of cilium assembly involved_inISORGD:13478019068941 PMID:27623382UniProtPMID:27623382
Ccdc88aChinchillapositive regulation of epidermal growth factor receptor signaling pathway involved_inISORGD:13478019068941 PMID:20462955UniProtPMID:20462955
Ccdc88aChinchillapositive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction involved_inISORGD:13154599068941 PMID:15753085UniProtPMID:15753085
Ccdc88aChinchillapositive regulation of protein localization to cilium involved_inISORGD:13478019068941 PMID:27623382UniProtPMID:27623382
Ccdc88aChinchillapositive regulation of stress fiber assembly involved_inISORGD:13478019068941 PMID:16139227CACAOPMID:16139227
Ccdc88aChinchillaregulation of actin cytoskeleton organization involved_inISORGD:13478019068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillaregulation of cell population proliferation involved_inISORGD:13154599068941 PMID:15753085UniProtPMID:15753085
Ccdc88aChinchillaregulation of neuron projection development involved_inISORGD:13154599068941 PMID:19778506UniProtPMID:19778506
Ccdc88aChinchillasmall GTPase-mediated signal transduction involved_inISORGD:13478019068941 PMID:19211784, PMID:23509302, PMID:27621449, PMID:27864364UniProtPMID:19211784|PMID:23509302|PMID:27621449|PMID:27864364
Ccdc88aChinchillaTOR signaling involved_inISORGD:13154599068941 PMID:19778506UniProtPMID:19778506
1 to 15 of 15 rows

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ccdc88aChinchillacell leading edge located_inISORGD:13154599068941 PMID:24211587MGIPMID:24211587
Ccdc88aChinchillacentriole located_inISORGD:13478019068941 PMID:27623382UniProtPMID:27623382
Ccdc88aChinchillacentrosome located_inISORGD:13478019068941 HPAGO_REF:0000052
Ccdc88aChinchillaciliary basal body located_inISORGD:13478019068941 PMID:27623382UniProtGO_REF:0000052|PMID:27623382
Ccdc88aChinchillaCOPI-coated Golgi to ER transport vesicle  ISORGD:13066949068941 RGDPMID:15749703|REF_RGD_ID:10401274
Ccdc88aChinchillacytoplasmic vesicle located_inISORGD:13478019068941 PMID:15882442UniProtPMID:15882442
Ccdc88aChinchillacytosol located_inISORGD:13478019068941 PMID:15749703, PMID:27864364UniProtPMID:15749703|PMID:27864364
Ccdc88aChinchillaendoplasmic reticulum located_inISORGD:13478019068941 PMID:15882442UniProtPMID:15882442
Ccdc88aChinchillaGolgi apparatus located_inISORGD:13478019068941 PMID:15882442UniProtPMID:15882442
Ccdc88aChinchillalamellipodium located_inISORGD:13478019068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillamembrane located_inISORGD:13478019068941 PMID:15749703, PMID:15882442UniProtPMID:15749703|PMID:15882442
Ccdc88aChinchillanucleoplasm located_inISORGD:13478019068941 HPAGO_REF:0000052
Ccdc88aChinchillaplasma membrane located_inISORGD:13478019068941 PMID:15882442, PMID:27864364UniProtGO_REF:0000052|PMID:15882442|PMID:27864364
1 to 13 of 13 rows

Molecular Function
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ccdc88aChinchillaactin binding enablesISORGD:13478019068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillaepidermal growth factor receptor binding enablesISOUniProtKB:P005339068941 PMID:20462955, PMID:25187647UniProtPMID:20462955|PMID:25187647
Ccdc88aChinchillaG-protein alpha-subunit binding enablesISOUniProtKB:P08753|UniProtKB:P08754|UniProtKB:P630929068941 PMID:27621449UniProtPMID:27621449
Ccdc88aChinchillaG-protein alpha-subunit binding enablesISOUniProtKB:P087539068941 PMID:19211784, PMID:23509302UniProtPMID:19211784|PMID:23509302
Ccdc88aChinchillaG-protein gamma-subunit binding  ISORGD:27169068941 RGDPMID:15749703|REF_RGD_ID:10401274
Ccdc88aChinchillaGDP-dissociation inhibitor activity enablesISORGD:13478019068941 PMID:27621449UniProtPMID:27621449
Ccdc88aChinchillaguanyl-nucleotide exchange factor activity enablesISORGD:13478019068941 PMID:19211784, PMID:23509302, PMID:27864364UniProtPMID:19211784|PMID:23509302|PMID:27864364
Ccdc88aChinchillainsulin receptor binding enablesISOUniProtKB:P062139068941 PMID:25187647UniProtPMID:25187647
Ccdc88aChinchillamicrotubule binding enablesISORGD:13154599068941 PMID:15882442UniProtPMID:15882442
Ccdc88aChinchillaphosphatidylinositol binding enablesISORGD:13478019068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillaprotein binding enablesISOUniProtKB:Q811T99068941 PMID:19778506UniProtPMID:19778506
Ccdc88aChinchillaprotein binding enablesISOPR:Q8BRT19068941 PMID:24211587MGIPMID:24211587
Ccdc88aChinchillaprotein homodimerization activity enablesISOUniProtKB:Q3V6T29068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillaprotein kinase B binding enablesISOUniProtKB:P317499068941 PMID:16139227UniProtPMID:16139227
Ccdc88aChinchillaprotein kinase B binding enablesISOUniProtKB:P317509068941 PMID:15753085UniProtPMID:15753085
Ccdc88aChinchillaprotein kinase C binding enablesISOUniProtKB:Q047599068941 PMID:23509302UniProtPMID:23509302
Ccdc88aChinchillaprotein serine/threonine kinase activator activity enablesISORGD:13154599068941 PMID:15753085UniProtPMID:15753085
Ccdc88aChinchillaSH2 domain binding enablesISOUniProtKB:P279869068941 PMID:21954290UniProtPMID:21954290
Ccdc88aChinchillavascular endothelial growth factor receptor 2 binding enablesISOUniProtKB:P359689068941 PMID:25187647UniProtPMID:25187647
1 to 19 of 19 rows


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Ccdc88a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,617,833 - 27,771,385 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBIChiLan1.0ChiLan1.0
CCDC88A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,287,842 - 55,419,856 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,287,842 - 55,419,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37255,514,978 - 55,646,992 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,368,482 - 55,500,467 (-)NCBINCBI36Build 36hg18NCBI36
Build 34255,426,630 - 55,558,614NCBI
Celera255,355,473 - 55,487,467 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,250,032 - 55,382,309 (-)NCBIHuRef
CHM1_1255,444,983 - 55,577,340 (-)NCBICHM1_1
T2T-CHM13v2.0255,285,045 - 55,417,059 (-)NCBIT2T-CHM13v2.0
Ccdc88a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,323,521 - 29,460,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,323,658 - 29,460,808 (+)EnsemblGRCm39 Ensembl
GRCm381129,373,405 - 29,510,808 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,373,658 - 29,510,808 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,273,775 - 29,410,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,273,775 - 29,410,812 (+)NCBIMGSCv36mm8
Celera1131,739,265 - 31,872,126 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.61NCBI
Ccdc88a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,304,654 - 107,456,104 (+)NCBIGRCr8
mRatBN7.214103,104,091 - 103,256,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,103,513 - 103,252,368 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.014113,771,093 - 113,936,376 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,867,209 - 113,932,263 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,437,642 - 113,602,573 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,376,486 - 110,525,468 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114110,402,673 - 110,553,099 (+)NCBI
Celera14101,981,223 - 102,133,399 (+)NCBICelera
Cytogenetic Map14q22NCBI
CCDC88A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21270,906,260 - 71,038,445 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A70,910,212 - 71,042,397 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,445,060 - 55,576,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,585,354 - 56,716,197 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,589,221 - 56,715,362 (-)Ensemblpanpan1.1panPan2
CCDC88A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,167,907 - 56,300,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,170,479 - 56,300,908 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,119,423 - 56,257,932 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,166,787 - 57,305,336 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,173,896 - 57,305,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,867,913 - 57,007,335 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,147,148 - 57,286,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,437,657 - 57,577,292 (-)NCBIUU_Cfam_GSD_1.0
Ccdc88a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,767,303 - 26,901,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,669,983 - 1,804,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,670,192 - 1,804,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC88A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,811,127 - 85,941,864 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,811,043 - 85,971,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,618,672 - 90,725,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC88A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,484,886 - 51,615,066 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,484,906 - 51,610,654 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,105,043 - 60,235,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc88a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248336,116,686 - 6,260,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248336,117,260 - 6,260,211 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000014835   ⟹   ENSCLAP00000014676
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542427,617,833 - 27,771,385 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000014836   ⟹   ENSCLAP00000014677
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542427,617,833 - 27,771,385 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000014837   ⟹   ENSCLAP00000014678
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542427,617,833 - 27,767,576 (+)Ensembl
RefSeq Acc Id: XM_005385778   ⟹   XP_005385835
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385779   ⟹   XP_005385836
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385780   ⟹   XP_005385837
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514611   ⟹   XP_013370065
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514612   ⟹   XP_013370066
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514613   ⟹   XP_013370067
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,759,317 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001234162
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005385835   ⟸   XM_005385778
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VF48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005385837   ⟸   XM_005385780
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YPY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005385836   ⟸   XM_005385779
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013370066   ⟸   XM_013514612
- Peptide Label: isoform X5
- UniProtKB: A0A8C2YPY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370065   ⟸   XM_013514611
- Peptide Label: isoform X3
- Sequence:
Calponin-homology (CH)



1 to 20 of 20 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000010133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014835 ENTREZGENE
  ENSCLAT00000014835.1 UniProtKB/TrEMBL
  ENSCLAT00000014836 ENTREZGENE
  ENSCLAT00000014836.1 UniProtKB/TrEMBL
  ENSCLAT00000014837 ENTREZGENE
  ENSCLAT00000014837.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  HOOK_N UniProtKB/TrEMBL
NCBI Gene Ccdc88a ENTREZGENE
PANTHER HOOK PROTEINS UniProtKB/TrEMBL
  PTHR18947:SF30 UniProtKB/TrEMBL
Pfam HOOK_N UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
Superfamily-SCOP Hook domain UniProtKB/TrEMBL
UniProt A0A8C2VF48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YPY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YPY3 ENTREZGENE, UniProtKB/TrEMBL
1 to 20 of 20 rows